jgi.p|Nanoce1779_2|581898, mRNA_3364 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|581898
Unique Name	mRNA_3364
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2579
Alignment location	scaffold_6:134764..137342 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	581984
Track	FilteredModels2
ProteinId	581898

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:134764..137342 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581898	gene_3364	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581898	mRNA_3364-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3364	CDS_3364	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:134764..137342-
coding sequence from alignment at scaffold_6:134764..137342-

mRNA sequence

>mRNA_3364 ID=mRNA_3364|Name=jgi.p|Nanoce1779_2|581898|organism=Nannochloropsis oceanica|type=mRNA|length=2579bp
GTCGGTGGCAATGAACTTTATGGGCCTCGGCTCCTTTGCAACGGGCGCGG
GGGTCTTGGTGGCCACGGGTGTCACGAACGAACAAGCATATGCCGTTATG
TCGTGCTTTGGCGCGGGCATGTACAATGCTGTGGGTGCAGGAGTGTTGAT
AGAGTCTGGAGCGACCTTTACGCAATTCTCGGGACCGGGCTACATGGCTA
TGACGGGCATGGCGGAGTTTGTGGGCGCGGGTGTGTCGTCTCATGTGGGC
GTACCTGCTACCATGTATGGGTCCACTGTGGCCGTACATGGGCAAGGTGG
CTTCAGTTACAACGGTGCGGGCGTCTCAGTGTGGGTTGGATGTCCAATGG
CCATGTTCTGGGCGGTTTATTCGTTCTTGGGCTTAGGTGGGATGGTATCA
CAGGGGGCGGGAATCATGGTATGGGTCGGGAATCCGATTTTCATGCCCAT
GGCAGTGTCGTACTTTGCTGGGCTGGGGATGGTGATGTATGTAGGAGGGG
GGTCTGCAGTGATTGCCTTATCTCCAGTCTCTATGCCAATGGCACTAATG
GCCTTCTCAGGGCCGACCATGCCGATGATGACGGACGACGTGATGATGCC
GAACTCGACCTTTGGAGGGGGCGGACACCATGGCGGAAGGGGAAGAGCAA
CAGCCAATGGTATGAGGATGAACGACGACATGATGATGGACGACGACATG
ATGATGGACGACATGATGATGATGCACATGGCACATCCCGCCAATTTTTG
GATTCAGGGCAACACTGAGGCCACGGGCAAAGGCAGCGCGTTCGTGACGG
GAGGGGGGATGGTGGAGGGAAATATTAAATGGGCGTCACACATGTTAGAC
TCAGACCCCGAGTTCAATTTGTACGAGGGGATAAGTAACGTGAGCAGCAC
TGATCGTGTCCGGGGACTGCGGAAGCGACGCTTGTCCGGCGCGGCTCTCA
CGGACGCCGTAAGTCTCTTTGACGACGACGCGGATGGGGGCTCGTCAAAG
CTTCTGGCCGTTGGTCTGGATGTGGACAATTTGCTTGACGTAAGGGCTGA
GGGCATAGACGAGAAGTTTAAGAGCTGGGTGCCGGAGAAACTGTTGAAGG
CTGCGGGAGACATTGCGGCGCTACGCGAGAGTCCGGCCTTTATCAAGGCC
ACCAAAGACTCGGAGCTGAACAACTACCTGAACAGGGAACCTCTCACTCT
TCAGATCAATAATGAACATCTCGATTACTGCGGGGTGTGCGAGACGGAGC
TCGTGGGCGGCAAGGGCCTCGACACCTGTGACGTTGAGGACTCATGTGCG
GTCCTTCAGGCTGGGGCCCCAGCGGGCGTGCAAGCAGCCTTTGACTTTGG
CGATGTCGCATTTGACCCCACCCATGTTGTGGTAGCCGAGTTTTTGCCCA
CTACGGGCGCGGAGGTGGAAGAGGGAGGACTGGACCCTGAATGGCTCCGT
CGGGCGTTACAGGGCTATTTCAAGGCAAATGGGACATCGGGCATCCATGT
CTCGACATTTTCCGGAATGCCCGATGACTTTTTCACCGGCTTGGCGGATG
CTACGGCCCCCGCGACAAGGGCGCGACGGCGTGCTTTGCGCCGATTGCGG
CAGAACCGGGAGGGGGGAGAGCAAGAGGACATGAAAACGGAGGAGGACGA
GGAGGAGGAAGTCAGGCAACGAAAGGAGCGCCGGCGCCGAACGTCTGCAC
TGGCCAACGCAGAGTACCCCAACACACACGTGCTTAAGGCTGTGTTTGTG
ACGTCTGATACGGCGAAGGCACAGGCGTTGGCAACTGCCCTGAGCGAAAA
GTCCTCGGAGGGTTACCAAGACATGGATCTGTATGTAGGCGACTACCTCA
ATGCGCGCGAAGGAGTCCTCATCCAAGCACTAGACGGCGTGGTGCTCCAG
CAGTTCAACGTTCCGGCGTATGCGAGCCTAGATTTCACCAAAGCATTTGC
CGATGAGGTGGGCTCAGCAGCAGGGGAACAGTCCGTCCGGTTGGTAGATT
CGGAGAATCTGGGCATGCCCTTGTCGCGCGCGGTAGCGGGGAAGGAGTAT
AATGTGGAGCTTGCTGGTTTCCCCGCAGGAGTCTTCTTGTCAGTCTCTCT
CTTCGGGCGAGACGCGACGGGGGACAAGCAAACGGCGGCTCTGGTAAAAC
GTGTAGTTACCACCGATAAGACAGGTGGAGCGGCATTTGCATGGACGGTG
CCTAGGGGGCAGGCAAAAGGAGATTATTACTTAAAGGCAAGCGATGTTAC
TGGGAAAGTGTTTGGCATGTCGACGACGTTTGAGGTGGACCGGCAAGCAA
AGCGTCGTTTGGTGGGACCATGGCATACGGTCGAGGTTTAATTCTTTGGG
AGCACATGGAGTTACTAGGAATTTTAAAAAGAGTCAAAGGGAAGAGGACG
AGAAAAAACGTGCTCAAAGAATTTAATGCATGAGAGGTAAGCCCGATGAT
TTGGTTTCTGCATTGAACTCCAGTAGAAAAACGCTAACACAGAGAAAAAG
GGCCTATCAAGGAAGGAGGATAAGATATAAAAGAGGAAGATGAAGCCAGA
ATAAAAGCAATCAAGATTTTGGGCTAACA

protein sequence of jgi.p|Nanoce1779_2|581898

>mRNA_3364-protein ID=mRNA_3364-protein|Name=jgi.p|Nanoce1779_2|581898|organism=Nannochloropsis oceanica|type=polypeptide|length=777bp
MNFMGLGSFATGAGVLVATGVTNEQAYAVMSCFGAGMYNAVGAGVLIESG
ATFTQFSGPGYMAMTGMAEFVGAGVSSHVGVPATMYGSTVAVHGQGGFSY
NGAGVSVWVGCPMAMFWAVYSFLGLGGMVSQGAGIMVWVGNPIFMPMAVS
YFAGLGMVMYVGGGSAVIALSPVSMPMALMAFSGPTMPMMTDDVMMPNST
FGGGGHHGGRGRATANGMRMNDDMMMDDDMMMDDMMMMHMAHPANFWIQG
NTEATGKGSAFVTGGGMVEGNIKWASHMLDSDPEFNLYEGISNVSSTDRV
RGLRKRRLSGAALTDAVSLFDDDADGGSSKLLAVGLDVDNLLDVRAEGID
EKFKSWVPEKLLKAAGDIAALRESPAFIKATKDSELNNYLNREPLTLQIN
NEHLDYCGVCETELVGGKGLDTCDVEDSCAVLQAGAPAGVQAAFDFGDVA
FDPTHVVVAEFLPTTGAEVEEGGLDPEWLRRALQGYFKANGTSGIHVSTF
SGMPDDFFTGLADATAPATRARRRALRRLRQNREGGEQEDMKTEEDEEEE
VRQRKERRRRTSALANAEYPNTHVLKAVFVTSDTAKAQALATALSEKSSE
GYQDMDLYVGDYLNAREGVLIQALDGVVLQQFNVPAYASLDFTKAFADEV
GSAAGEQSVRLVDSENLGMPLSRAVAGKEYNVELAGFPAGVFLSVSLFGR
DATGDKQTAALVKRVVTTDKTGGAAFAWTVPRGQAKGDYYLKASDVTGKV
FGMSTTFEVDRQAKRRLVGPWHTVEV*

mRNA from alignment at scaffold_6:134764..137342-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3364 ID=mRNA_3364|Name=jgi.p|Nanoce1779_2|581898|organism=Nannochloropsis oceanica|type=mRNA|length=2579bp|location=Sequence derived from alignment at scaffold_6:134764..137342- (Nannochloropsis oceanica)
GTCGGTGGCAATGAACTTTATGGGCCTCGGCTCCTTTGCAACGGGCGCGG
GGGTCTTGGTGGCCACGGGTGTCACGAACGAACAAGCATATGCCGTTATG
TCGTGCTTTGGCGCGGGCATGTACAATGCTGTGGGTGCAGGAGTGTTGAT
AGAGTCTGGAGCGACCTTTACGCAATTCTCGGGACCGGGCTACATGGCTA
TGACGGGCATGGCGGAGTTTGTGGGCGCGGGTGTGTCGTCTCATGTGGGC
GTACCTGCTACCATGTATGGGTCCACTGTGGCCGTACATGGGCAAGGTGG
CTTCAGTTACAACGGTGCGGGCGTCTCAGTGTGGGTTGGATGTCCAATGG
CCATGTTCTGGGCGGTTTATTCGTTCTTGGGCTTAGGTGGGATGGTATCA
CAGGGGGCGGGAATCATGGTATGGGTCGGGAATCCGATTTTCATGCCCAT
GGCAGTGTCGTACTTTGCTGGGCTGGGGATGGTGATGTATGTAGGAGGGG
GGTCTGCAGTGATTGCCTTATCTCCAGTCTCTATGCCAATGGCACTAATG
GCCTTCTCAGGGCCGACCATGCCGATGATGACGGACGACGTGATGATGCC
GAACTCGACCTTTGGAGGGGGCGGACACCATGGCGGAAGGGGAAGAGCAA
CAGCCAATGGTATGAGGATGAACGACGACATGATGATGGACGACGACATG
ATGATGGACGACATGATGATGATGCACATGGCACATCCCGCCAATTTTTG
GATTCAGGGCAACACTGAGGCCACGGGCAAAGGCAGCGCGTTCGTGACGG
GAGGGGGGATGGTGGAGGGAAATATTAAATGGGCGTCACACATGTTAGAC
TCAGACCCCGAGTTCAATTTGTACGAGGGGATAAGTAACGTGAGCAGCAC
TGATCGTGTCCGGGGACTGCGGAAGCGACGCTTGTCCGGCGCGGCTCTCA
CGGACGCCGTAAGTCTCTTTGACGACGACGCGGATGGGGGCTCGTCAAAG
CTTCTGGCCGTTGGTCTGGATGTGGACAATTTGCTTGACGTAAGGGCTGA
GGGCATAGACGAGAAGTTTAAGAGCTGGGTGCCGGAGAAACTGTTGAAGG
CTGCGGGAGACATTGCGGCGCTACGCGAGAGTCCGGCCTTTATCAAGGCC
ACCAAAGACTCGGAGCTGAACAACTACCTGAACAGGGAACCTCTCACTCT
TCAGATCAATAATGAACATCTCGATTACTGCGGGGTGTGCGAGACGGAGC
TCGTGGGCGGCAAGGGCCTCGACACCTGTGACGTTGAGGACTCATGTGCG
GTCCTTCAGGCTGGGGCCCCAGCGGGCGTGCAAGCAGCCTTTGACTTTGG
CGATGTCGCATTTGACCCCACCCATGTTGTGGTAGCCGAGTTTTTGCCCA
CTACGGGCGCGGAGGTGGAAGAGGGAGGACTGGACCCTGAATGGCTCCGT
CGGGCGTTACAGGGCTATTTCAAGGCAAATGGGACATCGGGCATCCATGT
CTCGACATTTTCCGGAATGCCCGATGACTTTTTCACCGGCTTGGCGGATG
CTACGGCCCCCGCGACAAGGGCGCGACGGCGTGCTTTGCGCCGATTGCGG
CAGAACCGGGAGGGGGGAGAGCAAGAGGACATGAAAACGGAGGAGGACGA
GGAGGAGGAAGTCAGGCAACGAAAGGAGCGCCGGCGCCGAACGTCTGCAC
TGGCCAACGCAGAGTACCCCAACACACACGTGCTTAAGGCTGTGTTTGTG
ACGTCTGATACGGCGAAGGCACAGGCGTTGGCAACTGCCCTGAGCGAAAA
GTCCTCGGAGGGTTACCAAGACATGGATCTGTATGTAGGCGACTACCTCA
ATGCGCGCGAAGGAGTCCTCATCCAAGCACTAGACGGCGTGGTGCTCCAG
CAGTTCAACGTTCCGGCGTATGCGAGCCTAGATTTCACCAAAGCATTTGC
CGATGAGGTGGGCTCAGCAGCAGGGGAACAGTCCGTCCGGTTGGTAGATT
CGGAGAATCTGGGCATGCCCTTGTCGCGCGCGGTAGCGGGGAAGGAGTAT
AATGTGGAGCTTGCTGGTTTCCCCGCAGGAGTCTTCTTGTCAGTCTCTCT
CTTCGGGCGAGACGCGACGGGGGACAAGCAAACGGCGGCTCTGGTAAAAC
GTGTAGTTACCACCGATAAGACAGGTGGAGCGGCATTTGCATGGACGGTG
CCTAGGGGGCAGGCAAAAGGAGATTATTACTTAAAGGCAAGCGATGTTAC
TGGGAAAGTGTTTGGCATGTCGACGACGTTTGAGGTGGACCGGCAAGCAA
AGCGTCGTTTGGTGGGACCATGGCATACGGTCGAGGTTTAATTCTTTGGG
AGCACATGGAGTTACTAGGAATTTTAAAAAGAGTCAAAGGGAAGAGGACG
AGAAAAAACGTGCTCAAAGAATTTAATGCATGAGAGGTAAGCCCGATGAT
TTGGTTTCTGCATTGAACTCCAGTAGAAAAACGCTAACACAGAGAAAAAG
GGCCTATCAAGGAAGGAGGATAAGATATAAAAGAGGAAGATGAAGCCAGA
ATAAAAGCAATCAAGATTTTGGGCTAACA

Coding sequence (CDS) from alignment at scaffold_6:134764..137342-

>mRNA_3364 ID=mRNA_3364|Name=jgi.p|Nanoce1779_2|581898|organism=Nannochloropsis oceanica|type=CDS|length=2331bp|location=Sequence derived from alignment at scaffold_6:134764..137342- (Nannochloropsis oceanica)
ATGAACTTTATGGGCCTCGGCTCCTTTGCAACGGGCGCGGGGGTCTTGGT
GGCCACGGGTGTCACGAACGAACAAGCATATGCCGTTATGTCGTGCTTTG
GCGCGGGCATGTACAATGCTGTGGGTGCAGGAGTGTTGATAGAGTCTGGA
GCGACCTTTACGCAATTCTCGGGACCGGGCTACATGGCTATGACGGGCAT
GGCGGAGTTTGTGGGCGCGGGTGTGTCGTCTCATGTGGGCGTACCTGCTA
CCATGTATGGGTCCACTGTGGCCGTACATGGGCAAGGTGGCTTCAGTTAC
AACGGTGCGGGCGTCTCAGTGTGGGTTGGATGTCCAATGGCCATGTTCTG
GGCGGTTTATTCGTTCTTGGGCTTAGGTGGGATGGTATCACAGGGGGCGG
GAATCATGGTATGGGTCGGGAATCCGATTTTCATGCCCATGGCAGTGTCG
TACTTTGCTGGGCTGGGGATGGTGATGTATGTAGGAGGGGGGTCTGCAGT
GATTGCCTTATCTCCAGTCTCTATGCCAATGGCACTAATGGCCTTCTCAG
GGCCGACCATGCCGATGATGACGGACGACGTGATGATGCCGAACTCGACC
TTTGGAGGGGGCGGACACCATGGCGGAAGGGGAAGAGCAACAGCCAATGG
TATGAGGATGAACGACGACATGATGATGGACGACGACATGATGATGGACG
ACATGATGATGATGCACATGGCACATCCCGCCAATTTTTGGATTCAGGGC
AACACTGAGGCCACGGGCAAAGGCAGCGCGTTCGTGACGGGAGGGGGGAT
GGTGGAGGGAAATATTAAATGGGCGTCACACATGTTAGACTCAGACCCCG
AGTTCAATTTGTACGAGGGGATAAGTAACGTGAGCAGCACTGATCGTGTC
CGGGGACTGCGGAAGCGACGCTTGTCCGGCGCGGCTCTCACGGACGCCGT
AAGTCTCTTTGACGACGACGCGGATGGGGGCTCGTCAAAGCTTCTGGCCG
TTGGTCTGGATGTGGACAATTTGCTTGACGTAAGGGCTGAGGGCATAGAC
GAGAAGTTTAAGAGCTGGGTGCCGGAGAAACTGTTGAAGGCTGCGGGAGA
CATTGCGGCGCTACGCGAGAGTCCGGCCTTTATCAAGGCCACCAAAGACT
CGGAGCTGAACAACTACCTGAACAGGGAACCTCTCACTCTTCAGATCAAT
AATGAACATCTCGATTACTGCGGGGTGTGCGAGACGGAGCTCGTGGGCGG
CAAGGGCCTCGACACCTGTGACGTTGAGGACTCATGTGCGGTCCTTCAGG
CTGGGGCCCCAGCGGGCGTGCAAGCAGCCTTTGACTTTGGCGATGTCGCA
TTTGACCCCACCCATGTTGTGGTAGCCGAGTTTTTGCCCACTACGGGCGC
GGAGGTGGAAGAGGGAGGACTGGACCCTGAATGGCTCCGTCGGGCGTTAC
AGGGCTATTTCAAGGCAAATGGGACATCGGGCATCCATGTCTCGACATTT
TCCGGAATGCCCGATGACTTTTTCACCGGCTTGGCGGATGCTACGGCCCC
CGCGACAAGGGCGCGACGGCGTGCTTTGCGCCGATTGCGGCAGAACCGGG
AGGGGGGAGAGCAAGAGGACATGAAAACGGAGGAGGACGAGGAGGAGGAA
GTCAGGCAACGAAAGGAGCGCCGGCGCCGAACGTCTGCACTGGCCAACGC
AGAGTACCCCAACACACACGTGCTTAAGGCTGTGTTTGTGACGTCTGATA
CGGCGAAGGCACAGGCGTTGGCAACTGCCCTGAGCGAAAAGTCCTCGGAG
GGTTACCAAGACATGGATCTGTATGTAGGCGACTACCTCAATGCGCGCGA
AGGAGTCCTCATCCAAGCACTAGACGGCGTGGTGCTCCAGCAGTTCAACG
TTCCGGCGTATGCGAGCCTAGATTTCACCAAAGCATTTGCCGATGAGGTG
GGCTCAGCAGCAGGGGAACAGTCCGTCCGGTTGGTAGATTCGGAGAATCT
GGGCATGCCCTTGTCGCGCGCGGTAGCGGGGAAGGAGTATAATGTGGAGC
TTGCTGGTTTCCCCGCAGGAGTCTTCTTGTCAGTCTCTCTCTTCGGGCGA
GACGCGACGGGGGACAAGCAAACGGCGGCTCTGGTAAAACGTGTAGTTAC
CACCGATAAGACAGGTGGAGCGGCATTTGCATGGACGGTGCCTAGGGGGC
AGGCAAAAGGAGATTATTACTTAAAGGCAAGCGATGTTACTGGGAAAGTG
TTTGGCATGTCGACGACGTTTGAGGTGGACCGGCAAGCAAAGCGTCGTTT
GGTGGGACCATGGCATACGGTCGAGGTTTAA

Synonyms

Publications