jgi.p|Nanoce1779_2|358291, mRNA_3363 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|358291
Unique NamemRNA_3363
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1123
Alignment locationscaffold_6:133025..134147 -

Link to JBrowse

Properties
Property NameValue
TranscriptId358377
TrackFilteredModels2
ProteinId358291
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:133025..134147 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|358291gene_3363Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|358291mRNA_3363-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3363CDS_3363Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3363 ID=mRNA_3363|Name=jgi.p|Nanoce1779_2|358291|organism=Nannochloropsis oceanica|type=mRNA|length=1123bp
TTTAACAACGCGTTCGTCGGTGTAAAACCGCTGGGAGAACGAGGTGGAGG
CAGCAGCAGATGCGGAGGTGGTGGAGGAGGAGGTGGTAGAGGAAGGCGAA
GTGGTTGAGGTAATAGTTGAGATGACATGATTCCTCATAAGACGCATGGG
ATCACTGGCAAGCCCCGAGCTCTTTTCCCCCTTCCCCTCATTCCTCCTTC
GCTCTCCCTTTCTCCCTCTTTACCCCTCCGGCTGGGGCGCCAGCTAGTCG
CCATCTCCTCCCTCCTCGACCTCTCTCCTCCTCTTCCTTCACCATATCCA
CTACTGCTGTTGCTGCCGCTGCTGCTGTTGCTACCGCTGCTACTTTTCTT
CCTCATGAGGCGTGGGCGGTCGAACCCCGTCCGTCCTGGGCTGGGCCAGG
CAAAGACGACCTCTTTAAGTCTCTGCGTTCGTCGTCCCGTCGCTCCACCA
CCTTCCATCCCTCCCTCTCTCTCTCTCCCTCCCTTGGGATCGGCTCCGGC
TCCTGCTGCTCCTGCTCCCGCTCACTCTCATTCTGCTGCTGCTGCCGCTG
CTCATGCTGCTGCTGCTACTACTACTATTACTACTACTACTACTGCTGCT
GCTGCTATGCTGCCGACAGTCATACTCGGAACAACGCAGATACTCCCGCA
ATCCCGAATTAGACCAAGACTCCCTCCCTCCTCCTTTCTCTAGGAGAAGG
GTTAGAATTTCGAGCTTCGGCACATTACGGCCTTCCCCCACCGCGGGGCG
CAGCAAGAGGACTTTTGTACCGCATTTGGGCTGCGCTGGTGATAGAGGGC
GGGCTTTCACCACACTTGTGCTTTGATAAACATAAGACGAACACGAGCTA
CCACCAGGACCTGTGCCCGAACAACAAGTAGAGTTACTGCATGTTGCTGT
CGATCAGGATCAACTCGTTGGACTGCCAGGACACTTACGTCTCCGTCGGC
TGGGTAATCGACCGCTACATCGTGCTGTCGCAGATCACCGAGTTCTCCTG
CGCGACGTACTACTTCTCGGTGGCCATCAAGAACAGAGAGAGGATCCTCG
TGGCGATGAACCAGAAGAGATCGATTTGGCAAGGCAGAGTCAGACCAAGG
CGAGGAGGAGACATGGGCCGTCT
back to top

protein sequence of jgi.p|Nanoce1779_2|358291

>mRNA_3363-protein ID=mRNA_3363-protein|Name=jgi.p|Nanoce1779_2|358291|organism=Nannochloropsis oceanica|type=polypeptide|length=189bp
MIPHKTHGITGKPRALFPLPLIPPSLSLSPSLPLRLGRQLVAISSLLDLS
PPLPSPYPLLLLLPLLLLLPLLLFFLMRRGRSNPVRPGLGQAKTTSLSLC
VRRPVAPPPSIPPSLSLPPLGSAPAPAAPAPAHSHSAAAAAAHAAAATTT
ITTTTTAAAAMLPTVILGTTQILPQSRIRPRLPPSSFL*
back to top

mRNA from alignment at scaffold_6:133025..134147-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3363 ID=mRNA_3363|Name=jgi.p|Nanoce1779_2|358291|organism=Nannochloropsis oceanica|type=mRNA|length=1123bp|location=Sequence derived from alignment at scaffold_6:133025..134147- (Nannochloropsis oceanica)
TTTAACAACGCGTTCGTCGGTGTAAAACCGCTGGGAGAACGAGGTGGAGG
CAGCAGCAGATGCGGAGGTGGTGGAGGAGGAGGTGGTAGAGGAAGGCGAA
GTGGTTGAGGTAATAGTTGAGATGACATGATTCCTCATAAGACGCATGGG
ATCACTGGCAAGCCCCGAGCTCTTTTCCCCCTTCCCCTCATTCCTCCTTC
GCTCTCCCTTTCTCCCTCTTTACCCCTCCGGCTGGGGCGCCAGCTAGTCG
CCATCTCCTCCCTCCTCGACCTCTCTCCTCCTCTTCCTTCACCATATCCA
CTACTGCTGTTGCTGCCGCTGCTGCTGTTGCTACCGCTGCTACTTTTCTT
CCTCATGAGGCGTGGGCGGTCGAACCCCGTCCGTCCTGGGCTGGGCCAGG
CAAAGACGACCTCTTTAAGTCTCTGCGTTCGTCGTCCCGTCGCTCCACCA
CCTTCCATCCCTCCCTCTCTCTCTCTCCCTCCCTTGGGATCGGCTCCGGC
TCCTGCTGCTCCTGCTCCCGCTCACTCTCATTCTGCTGCTGCTGCCGCTG
CTCATGCTGCTGCTGCTACTACTACTATTACTACTACTACTACTGCTGCT
GCTGCTATGCTGCCGACAGTCATACTCGGAACAACGCAGATACTCCCGCA
ATCCCGAATTAGACCAAGACTCCCTCCCTCCTCCTTTCTCTAGGAGAAGG
GTTAGAATTTCGAGCTTCGGCACATTACGGCCTTCCCCCACCGCGGGGCG
CAGCAAGAGGACTTTTGTACCGCATTTGGGCTGCGCTGGTGATAGAGGGC
GGGCTTTCACCACACTTGTGCTTTGATAAACATAAGACGAACACGAGCTA
CCACCAGGACCTGTGCCCGAACAACAAGTAGAGTTACTGCATGTTGCTGT
CGATCAGGATCAACTCGTTGGACTGCCAGGACACTTACGTCTCCGTCGGC
TGGGTAATCGACCGCTACATCGTGCTGTCGCAGATCACCGAGTTCTCCTG
CGCGACGTACTACTTCTCGGTGGCCATCAAGAACAGAGAGAGGATCCTCG
TGGCGATGAACCAGAAGAGATCGATTTGGCAAGGCAGAGTCAGACCAAGG
CGAGGAGGAGACATGGGCCGTCT
back to top

Coding sequence (CDS) from alignment at scaffold_6:133025..134147-

>mRNA_3363 ID=mRNA_3363|Name=jgi.p|Nanoce1779_2|358291|organism=Nannochloropsis oceanica|type=CDS|length=567bp|location=Sequence derived from alignment at scaffold_6:133025..134147- (Nannochloropsis oceanica)
ATGATTCCTCATAAGACGCATGGGATCACTGGCAAGCCCCGAGCTCTTTT
CCCCCTTCCCCTCATTCCTCCTTCGCTCTCCCTTTCTCCCTCTTTACCCC
TCCGGCTGGGGCGCCAGCTAGTCGCCATCTCCTCCCTCCTCGACCTCTCT
CCTCCTCTTCCTTCACCATATCCACTACTGCTGTTGCTGCCGCTGCTGCT
GTTGCTACCGCTGCTACTTTTCTTCCTCATGAGGCGTGGGCGGTCGAACC
CCGTCCGTCCTGGGCTGGGCCAGGCAAAGACGACCTCTTTAAGTCTCTGC
GTTCGTCGTCCCGTCGCTCCACCACCTTCCATCCCTCCCTCTCTCTCTCT
CCCTCCCTTGGGATCGGCTCCGGCTCCTGCTGCTCCTGCTCCCGCTCACT
CTCATTCTGCTGCTGCTGCCGCTGCTCATGCTGCTGCTGCTACTACTACT
ATTACTACTACTACTACTGCTGCTGCTGCTATGCTGCCGACAGTCATACT
CGGAACAACGCAGATACTCCCGCAATCCCGAATTAGACCAAGACTCCCTC
CCTCCTCCTTTCTCTAG
back to top
Synonyms
Publications