jgi.p|Nanoce1779_2|358246, mRNA_3362 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|358246
Unique NamemRNA_3362
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1105
Alignment locationscaffold_6:131316..133105 +

Link to JBrowse

Properties
Property NameValue
TranscriptId358332
TrackFilteredModels2
ProteinId358246
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:131316..133105 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|358246gene_3362Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|358246mRNA_3362-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3362CDS_3362Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3362 ID=mRNA_3362|Name=jgi.p|Nanoce1779_2|358246|organism=Nannochloropsis oceanica|type=mRNA|length=1105bp
GATAGGAAGACGAAAAGGGGCAAAGCGGAGGGAGGGGGGAGGCGACGCAA
CAAGGGAGGAGGGGAGGGAGGAGGGGAGTGAGAGGGAGAGGGAGAGGGAG
AGGGGGTTGGAGGGGGGGTAAGGCCATCTTCCGCACAGAGGAGATGGGAA
AAATACGGAAAAGAAATGAGGAGAAGGAAGATAGGAAGGAGGAGAGGAAG
GAGGAGAGGAGGGAGGAGAGAAAGGAGGAGCCTTCTGACAAGGACATAGA
AAAGGAGGAAAAGTGGGTAGAGACGGAAGGGGAGAAAGGTGGAGCAGCAG
CAGCATCCTCTGCACTTGTGGTAGTGGCGGCAAGATGGACTCGGAGTGAG
AGTAGCAGTAGTGCTGGCACAGACACAGCAGTAGTAGTAGCAGCAAGAGA
AGGGTCAGGGGCAGCTGCAGCAGTCAAGGAAAAGGAGAAAGAGGAAGTGC
GGAACGGGGCTGGCATGGAGATCAAGGTAGAGGAAGAAAAGACAGAGGCG
CTTACAACATGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGAGAAGGTAGGAGCGGGGGGTGGCCCCGGTGTTGTGGCATAGGCG
AAATCCCAAAACACTGCAGGGGGCGGAAGAAAGCAGCAATAGTAGCAGCA
GCGACAGCAGCAGCAACAGTAGCAGTAGTAGCAGTAGCAGTGGCAGTGGT
GAGGATGATTACGAGGACGGAGGGAGGGAAGGGAGGAGGGAGGGAAAGAG
GGTGAGGAACCTCAAACCACGGGTGGAGTCGACGGCGAGTGCAGCAGTGA
GCAGAGAGTGTAGCAACGGCAACTGTGGCAGCACTAGCAGCAACAGCAGT
CGCATCAGCAGCAGCGACAGCCGGGAGAAGGAGGATGAAGAGGGCAAGAA
AGGAGGAGAAGGAGGGGAAGAGGGAGGGAAAGAGGCAGGTCCGATGGAAT
TGGTGAACTCCGACGACGGTCCACCCCGCCGTCTCTCTCTCCCTTCCTCC
TCCTTCAGTCCGTGAGAATGCACCAGACGGCCCATGTCTCCTCCTCGCCT
TGGTCTGACTCTGCCTTGCCAAATCGATCTCTTCTGGTTCATCGCCACGA
GGATC
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protein sequence of jgi.p|Nanoce1779_2|358246

>mRNA_3362-protein ID=mRNA_3362-protein|Name=jgi.p|Nanoce1779_2|358246|organism=Nannochloropsis oceanica|type=polypeptide|length=204bp
MGKIRKRNEEKEDRKEERKEERREERKEEPSDKDIEKEEKWVETEGEKGG
AAAASSALVVVAARWTRSESSSSAGTDTAVVVAAREGSGAAAAVKEKEKE
EVRNGAGMEIKVEEEKTEALTTWRRRRRRRRRRRRRRREGRSGGWPRCCG
IGEIPKHCRGRKKAAIVAAATAAATVAVVAVAVAVVRMITRTEGGKGGGR
ERG*
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mRNA from alignment at scaffold_6:131316..133105+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3362 ID=mRNA_3362|Name=jgi.p|Nanoce1779_2|358246|organism=Nannochloropsis oceanica|type=mRNA|length=1790bp|location=Sequence derived from alignment at scaffold_6:131316..133105+ (Nannochloropsis oceanica)
GATAGGAAGACGAAAAGGGGCAAAGCGGAGGGAGGGGGGAGGCGACGCAA
CAAGGGAGGAGGGGAGGGAGGAGGGGAGTGAGAGGGAGAGGGAGAGGGAG
AGGGGGTTGGAGGGGGGGTAAGGCCATCTTCCGCACAGAGGAGATGGGAA
AAATACGGAAAAGAAATGAGGAGAAGGAAGATAGGAAGGAGGAGAGGAAG
GAGGAGAGGAGGGAGGAGAGAAAGGAGGAGCCTTCTGACAAGGACATAGA
AAAGGAGGAAAAGTGGGTAGAGACGGAAGGGGAGAAAGGTGGAGCAGCAG
CAGCATCCTCTGCACTTGTGGTAGTGGCGGCAAGATGGACTCGGAGTGAG
AGTAGCAGTAGTGCTGGCACAGACACAGCAGTAGTAGTAGCAGCAAGAGA
AGGGTCAGGGGCAGCTGCAGCAGTAGAAAAAGGAGGAGGAGGAGGGGAGA
TAAGAGGGAAGAGGGCCACTGGGTGACCGCCACCAGCTACATGTACGTTC
CTCTTTGTGTATCTAGCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCTTGCTTCCCATAGTTCCACCGACCTGGAGGCATTCGTTGATCTCCAAG
GAATGCAACCACTTACTGCTCTTACCCTCCCTCACTCCCTTCTTCCCGAT
CGCCCTCTTCCACACTCCCTAGGCAAGGTCACGAGCTGCGCCCACACCCG
GAGGCCGAGCCGCGCCCGTGGCGTATGCCTGGAGTGCTTCATCGAGGAGG
TAGTGAGGAAGGTGACCACGGAGGAGAGGGGGGGGGGGGGTGATGCGACT
TTGGATGCGATCGTGGAGAGGTCTAGGGAGGGGGATGGGGAGGGAGGGAA
GGAAATGAAGGAGGGAGGAGGAGGAGGAGGAAGAGGAGAAAATGAAAAAG
AGGGAAAACAAGAAGGGGAAGCAGGAGGAGGAGATGGACGGGGAGAGGAA
GAGAGGGAGCGCGGTAGCCAGAAAGAAGGAGCAGGCGAACAAACGTAAAT
TCAAATTTCTGTCAGCTGTACCTGATGAAGAATTGAATCTCTTTATTTGC
GAAACGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGGAAAAGGGA
GGAACAGGTCAAGGAAAAGGAGAAAGAGGAAGTGCGGAACGGGGCTGGCA
TGGAGATCAAGGTAGAGGAAGAAAAGACAGAGGCGCTTACAACATGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGAAGGTAG
GAGCGGGGGGTGGCCCCGGTGTTGTGGCATAGGCGAAATCCCAAAACACT
GCAGGGGGCGGAAGAAAGCAGCAATAGTAGCAGCAGCGACAGCAGCAGCA
ACAGTAGCAGTAGTAGCAGTAGCAGTGGCAGTGGTGAGGATGATTACGAG
GACGGAGGGAGGGAAGGGAGGAGGGAGGGAAAGAGGGTGAGGAACCTCAA
ACCACGGGTGGAGTCGACGGCGAGTGCAGCAGTGAGCAGAGAGTGTAGCA
ACGGCAACTGTGGCAGCACTAGCAGCAACAGCAGTCGCATCAGCAGCAGC
GACAGCCGGGAGAAGGAGGATGAAGAGGGCAAGAAAGGAGGAGAAGGAGG
GGAAGAGGGAGGGAAAGAGGCAGGTCCGATGGAATTGGTGAACTCCGACG
ACGGTCCACCCCGCCGTCTCTCTCTCCCTTCCTCCTCCTTCAGTCCGTGA
GAATGCACCAGACGGCCCATGTCTCCTCCTCGCCTTGGTCTGACTCTGCC
TTGCCAAATCGATCTCTTCTGGTTCATCGCCACGAGGATC
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Coding sequence (CDS) from alignment at scaffold_6:131316..133105+

>mRNA_3362 ID=mRNA_3362|Name=jgi.p|Nanoce1779_2|358246|organism=Nannochloropsis oceanica|type=CDS|length=1224bp|location=Sequence derived from alignment at scaffold_6:131316..133105+ (Nannochloropsis oceanica)
ATGGGAAAAATACGGAAAAGAAATGAGGAGAAGGAAGATAGGAAGGAGGA
GAGGAAGGAGGAGAGGAGGGAGGAGAGAAAGGAGGAGCCTTCTGACAAGG
ACATAGAAAAGGAGGAAAAGTGGGTAGAGACGGAAGGGGAGAAAGGTGGA
GCAGCAGCAGCATCCTCTGCACTTGTGGTAGTGGCGGCAAGATGGACTCG
GAGTGAGAGTAGCAGTAGTGCTGGCACAGACACAGCAGTAGTAGTAGCAG
CAAGAGAAGGGTCAGGGGCAGCTGCAGCAGTCAAGGAAAAGGAGAAAGAG
GAAGTGCGGAACGGGGCTGGCATGGAGATCAAGGTAGAGGAAGAAAAGAC
AGAGGCGCTTACAACATGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGAGAAGGTAGGAGCGGGGGGTGGCCCCGGTGTTGTGGC
ATAGGCGAAATCCCAAAACACTGCAGGGGGCGGAAGAAAGCAGCAATAGT
AGCAGCAGCGACAGCAGCAGCAACAGTAGCAGTAGTAGCAGTAGCAGTGG
CAGTGGTGAGGATGATTACGAGGACGGAGGGAGGGAAGGGAGGAGGGAGG
GAAAGAGGGTGAATGGGAAAAATACGGAAAAGAAATGAGGAGAAGGAAGA
TAGGAAGGAGGAGAGGAAGGAGGAGAGGAGGGAGGAGAGAAAGGAGGAGC
CTTCTGACAAGGACATAGAAAAGGAGGAAAAGTGGGTAGAGACGGAAGGG
GAGAAAGGTGGAGCAGCAGCAGCATCCTCTGCACTTGTGGTAGTGGCGGC
AAGATGGACTCGGAGTGAGAGTAGCAGTAGTGCTGGCACAGACACAGCAG
TAGTAGTAGCAGCAAGAGAAGGGTCAGGGGCAGCTGCAGCAGTCAAGGAA
AAGGAGAAAGAGGAAGTGCGGAACGGGGCTGGCATGGAGATCAAGGTAGA
GGAAGAAAAGACAGAGGCGCTTACAACATGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGAGAAGGTAGGAGCGGGGGGTGGCCC
CGGTGTTGTGGCATAGGCGAAATCCCAAAACACTGCAGGGGGCGGAAGAA
AGCAGCAATAGTAGCAGCAGCGACAGCAGCAGCAACAGTAGCAGTAGTAG
CAGTAGCAGTGGCAGTGGTGAGGATGATTACGAGGACGGAGGGAGGGAAG
GGAGGAGGGAGGGAAAGAGGGTGA
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Synonyms
Publications