jgi.p|Nanoce1779_2|581894, mRNA_3361 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581894
Unique NamemRNA_3361
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length686
Alignment locationscaffold_6:130335..131261 -

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Properties
Property NameValue
TranscriptId581980
TrackFilteredModels2
ProteinId581894
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:130335..131261 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581894gene_3361Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581894mRNA_3361-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3361CDS_3361Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3361 ID=mRNA_3361|Name=jgi.p|Nanoce1779_2|581894|organism=Nannochloropsis oceanica|type=mRNA|length=686bp
TCCTTCCCCCTTCCCCTCCTTCTTCACCGCTTCGCCCATCACATCTAAGT
AACACATGCGACATAGGTGCCCCTGTAGGCTTAACGATGGGGATGCATGC
AATTTACTGCCAATCCTTCGCGTCCCTCCTCATTGGCCTCTCCCTCCCCC
CCTCTTCCTTCTCCTCTTCTTCTCCCCTACGATTACGTGTCGCATGGACC
AAACCCGTGTTGGCGGAAGCAGCTGTAGCATTTGCCTCAGACTGGAGACA
TTTCTCTACGAACTGCTTCTTCCGCTCGTCACTGCACATCCCCGTGAGCA
GTCTCCTTTTCCCCTTCCTCATGAGGCCTTCCTTTCCTTCTTCTGCCCCT
CTCTCTCCTTCTGCCGGAGCACGGGCAGTAGAGGAGGCGAAAAACTTCAC
TTGTAGACGTCCACACACATCATCCAAGCTGTCGTCTTCCTCGCCAATCA
TTCCAATTGCTGGTACCAAAGCCTGCTATGTGCGTGCGTGAACCCCAGTG
TACTTAATCTCCCTCTCTTCATTTTGGCTGTAATCAAGCATGGTGAGCGG
CGCTCAGTGTCCCCCGATTTTAATTGATGAAACAACGAAAACAAATGCAG
ACTGCCCCCTGCCTTTTACGAACTTTGCCACGCCAGAGACAGACGAGACC
GAACGTCGTCGAACCGTGCGTGCTGCTTGGACCTGT
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protein sequence of jgi.p|Nanoce1779_2|581894

>mRNA_3361-protein ID=mRNA_3361-protein|Name=jgi.p|Nanoce1779_2|581894|organism=Nannochloropsis oceanica|type=polypeptide|length=135bp
MGMHAIYCQSFASLLIGLSLPPSSFSSSSPLRLRVAWTKPVLAEAAVAFA
SDWRHFSTNCFFRSSLHIPVSSLLFPFLMRPSFPSSAPLSPSAGARAVEE
AKNFTCRRPHTSSKLSSSSPIIPIAGTKACYVRA*
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mRNA from alignment at scaffold_6:130335..131261-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3361 ID=mRNA_3361|Name=jgi.p|Nanoce1779_2|581894|organism=Nannochloropsis oceanica|type=mRNA|length=927bp|location=Sequence derived from alignment at scaffold_6:130335..131261- (Nannochloropsis oceanica)
TCCTTCCCCCTTCCCCTCCTTCTTCACCGCTTCGCCCATCACATCTAAGT
AACACATGCGACATAGGTGCCCCTGTAGGCTTAACGATGGGGATGCATGC
AATTTACTGCCAATCCTTCGCGTCCCTCCTCATTGGCCTCTCCCTCCCCC
CCTCTTCCTTCTCCTCTTCTTCTCCCCTACGATTACGTGTCGCATGGACC
AAACCCGTGTTGGCGGAAGCAGCTGTAGCATTTGCCTCAGACTGGAGACA
TTTCTCTACGAACTGCTTCTTCCGCTCGTCACTGCACATCCCCGTGAGCA
GTCTCCTTTTCCCCTTCCTCATGAGGCCTTCCTTTCCTTCTTCTGCCCCT
CTCTCTCCTTCTGCCGGAGCACGGGCAGTAGAGGAGGCGAAAAACTTCAC
TTGTAGACGTCCACACACATCATCCAAGCTGAATGGGGAAAAACAAGAGC
GGTAGGGAAGCAGAGACGTGAAAAGAAATAGTGGAGGAGGGCGTGGAAGG
GGATAGGAAGGGGGAAGGAGGGGAAGAGGGCAGAGTTAAATTACCTGTCG
TCTTCCTCGCCAATCATTCCAATTGCTGGTACCAAAGCCTGCTATGTGCG
TGCGTGAACCCCAGTGTACTGGGTGGGAGATTAGGGGAGGGAACAAGGTT
AGTGAAGGGTCGGGGTGGTATTCTGGCCTGATCACTGGCGTGGTTTCCTC
GCTCCCGTGTCCACAACAAGACAGGAAACGTACAAAACCGTACCTTAATC
TCCCTCTCTTCATTTTGGCTGTAATCAAGCATGGTGAGCGGCGCTCAGTG
TCCCCCGATTTTAATTGATGAAACAACGAAAACAAATGCAGACTGCCCCC
TGCCTTTTACGAACTTTGCCACGCCAGAGACAGACGAGACCGAACGTCGT
CGAACCGTGCGTGCTGCTTGGACCTGT
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Coding sequence (CDS) from alignment at scaffold_6:130335..131261-

>mRNA_3361 ID=mRNA_3361|Name=jgi.p|Nanoce1779_2|581894|organism=Nannochloropsis oceanica|type=CDS|length=810bp|location=Sequence derived from alignment at scaffold_6:130335..131261- (Nannochloropsis oceanica)
CTGTCGTCTTCCTCGCCAATCATTCCAATTGCTGGTACCAAAGCCTGCTA
TGTGCGTGCGTGAATGGGGATGCATGCAATTTACTGCCAATCCTTCGCGT
CCCTCCTCATTGGCCTCTCCCTCCCCCCCTCTTCCTTCTCCTCTTCTTCT
CCCCTACGATTACGTGTCGCATGGACCAAACCCGTGTTGGCGGAAGCAGC
TGTAGCATTTGCCTCAGACTGGAGACATTTCTCTACGAACTGCTTCTTCC
GCTCGTCACTGCACATCCCCGTGAGCAGTCTCCTTTTCCCCTTCCTCATG
AGGCCTTCCTTTCCTTCTTCTGCCCCTCTCTCTCCTTCTGCCGGAGCACG
GGCAGTAGAGGAGGCGAAAAACTTCACTTGTAGACGTCCACACACATCAT
CCAAGCTGTCGTCTTCCTCGCCAATCATTCCAATTGCTGGTACCAAAGCC
TGCTATGTGCGTGCGTGAATGGGGATGCATGCAATTTACTGCCAATCCTT
CGCGTCCCTCCTCATTGGCCTCTCCCTCCCCCCCTCTTCCTTCTCCTCTT
CTTCTCCCCTACGATTACGTGTCGCATGGACCAAACCCGTGTTGGCGGAA
GCAGCTGTAGCATTTGCCTCAGACTGGAGACATTTCTCTACGAACTGCTT
CTTCCGCTCGTCACTGCACATCCCCGTGAGCAGTCTCCTTTTCCCCTTCC
TCATGAGGCCTTCCTTTCCTTCTTCTGCCCCTCTCTCTCCTTCTGCCGGA
GCACGGGCAGTAGAGGAGGCGAAAAACTTCACTTGTAGACGTCCACACAC
ATCATCCAAG
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Synonyms
Publications