jgi.p|Nanoce1779_2|237281, mRNA_336 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|237281
Unique NamemRNA_336
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length494
Alignment locationscaffold_3:829836..830444 +

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Properties
Property NameValue
TranscriptId237367
TrackFilteredModels2
ProteinId237281
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:829836..830444 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|237281gene_336Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|237281mRNA_336-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_336CDS_336Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_336 ID=mRNA_336|Name=jgi.p|Nanoce1779_2|237281|organism=Nannochloropsis oceanica|type=mRNA|length=494bp
AGAGGAATGCTTGCGGTTGGAGGATATCAAGGTACGTCTCTCGGCTTGTA
GGGGTGCTTGCTGGGAGCTTTAACTCAATATGAAGACAACATGGGAAGTC
TTCACTTATCCCGGCCCAACCCATACCATCTCTCTATCCCACCTTCCCTC
CCTCACGCCCTCTCCCATTCTACCCTTCTCGTCCTCCTCCTATCCCTACA
GGAACTCCTGGGGCTAGAGCTGCTGGGCGTGATTCCCGAAAGCAAGTGCA
TCTTGACAGCCACTAACATCGGGCAACCCGTCATTTGCATGCCGGACCAA
GACGCAGGACAAGCCTACATGGACACCGTGGAGCGTTTCATGGGAGAAGA
GAAGGAGTTCCGTTTCCTGAGCCCCAAGCCCACGGGCATCCTATCAATGT
TGTTTTCGTGAGTATCGGCTTGGATGGGTCAAGATCTTAACTCTTCGTCC
GCGTGGACATTCGAGGGAGGGAGGGGAGGAAGGGAGGGAGGTGG
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protein sequence of jgi.p|Nanoce1779_2|237281

>mRNA_336-protein ID=mRNA_336-protein|Name=jgi.p|Nanoce1779_2|237281|organism=Nannochloropsis oceanica|type=polypeptide|length=107bp
MGSLHLSRPNPYHLSIPPSLPHALSHSTLLVLLLSLQELLGLELLGVIPE
SKCILTATNIGQPVICMPDQDAGQAYMDTVERFMGEEKEFRFLSPKPTGI
LSMLFS*
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mRNA from alignment at scaffold_3:829836..830444+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_336 ID=mRNA_336|Name=jgi.p|Nanoce1779_2|237281|organism=Nannochloropsis oceanica|type=mRNA|length=609bp|location=Sequence derived from alignment at scaffold_3:829836..830444+ (Nannochloropsis oceanica)
AGAGGAATGCTTGCGGTTGGAGGATATCAAGGTACGTCTCTCGGCTTGTA
GGGGTGCTTGCTGGGAGCTTTAACTCAATATGAAGACAACATGGGAAGTC
TTCACTTATCCCGGCCCAACCCATACCATCTCTCTATCCCACCTTCCCTC
CCTCACGCCCTCTCCCATTCTACCCTTCTCGTCCTCCTCCTATCCCTACA
GGAACTCCTGGGGCTAGAGCTGCTGGGCGTGATTCCCGAAAGCAAGTGCA
TCTTGACAGCCACTAACATCGGGCAACCCGTCATTTGCATGCCGGACCAA
GACGCAGGACAAGGTGAGGACAGAGAACGGGGGGGGGGCGAATTTAGTGG
ACTCCCTTCCAACAATTGGTCTTATACAATGATTTACTCATGGATGTACA
CACCCTGCCGCCCTCCCCCCCCTCACAGCCTACATGGACACCGTGGAGCG
TTTCATGGGAGAAGAGAAGGAGTTCCGTTTCCTGAGCCCCAAGCCCACGG
GCATCCTATCAATGTTGTTTTCGTGAGTATCGGCTTGGATGGGTCAAGAT
CTTAACTCTTCGTCCGCGTGGACATTCGAGGGAGGGAGGGGAGGAAGGGA
GGGAGGTGG
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Coding sequence (CDS) from alignment at scaffold_3:829836..830444+

>mRNA_336 ID=mRNA_336|Name=jgi.p|Nanoce1779_2|237281|organism=Nannochloropsis oceanica|type=CDS|length=642bp|location=Sequence derived from alignment at scaffold_3:829836..830444+ (Nannochloropsis oceanica)
ATGGGAAGTCTTCACTTATCCCGGCCCAACCCATACCATCTCTCTATCCC
ACCTTCCCTCCCTCACGCCCTCTCCCATTCTACCCTTCTCGTCCTCCTCC
TATCCCTACAGGAACTCCTGGGGCTAGAGCTGCTGGGCGTGATTCCCGAA
AGCAAGTGCATCTTGACAGCCACTAACATCGGGCAACCCGTCATTTGCAT
GCCGGACCAAGACGCAGGACAAGCCTACATGGACACCGTGGAGCGTTTCA
TGGGAGAAGAGAAGGAGTTCCGTTTCCTGAGCCCCAAGCCCACGGGCATC
CTATCAATGTTGTTTTCGTGAATGGGAAGTCTTCACTTATCCCGGCCCAA
CCCATACCATCTCTCTATCCCACCTTCCCTCCCTCACGCCCTCTCCCATT
CTACCCTTCTCGTCCTCCTCCTATCCCTACAGGAACTCCTGGGGCTAGAG
CTGCTGGGCGTGATTCCCGAAAGCAAGTGCATCTTGACAGCCACTAACAT
CGGGCAACCCGTCATTTGCATGCCGGACCAAGACGCAGGACAAGCCTACA
TGGACACCGTGGAGCGTTTCATGGGAGAAGAGAAGGAGTTCCGTTTCCTG
AGCCCCAAGCCCACGGGCATCCTATCAATGTTGTTTTCGTGA
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Synonyms
Publications