jgi.p|Nanoce1779_2|552698, mRNA_3357 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|552698
Unique NamemRNA_3357
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1485
Alignment locationscaffold_6:115237..116930 -

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Properties
Property NameValue
TranscriptId552784
TrackFilteredModels2
ProteinId552698
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:115237..116930 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|552698gene_3357Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|552698mRNA_3357-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3357CDS_3357Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3357 ID=mRNA_3357|Name=jgi.p|Nanoce1779_2|552698|organism=Nannochloropsis oceanica|type=mRNA|length=1485bp
ATGGCCGATCGCCCCATCATACTCACCGGCACAGCTGCGCCGCCTGATTT
TGTGGAAGAGACGGATTTGGCCTTGGGACGGTTTGGTGCTAAGGTGTGTT
TTGCGACCGACGACTGGTTCGCCGCGGCGGAAAACATGCTTAATCATGAA
GAGCCTGTGTTTATCGCAGAGAAATTCACGACCTGCGGCAAGTGGATGGA
CGGGTGGGAGACTCGGCGGAAGCGTATTGCAGGCCATGATTGGTGCATTA
TTAAGATGGCATTCCCGGGGCGCATTATGGGGATCGATGTGGATACGTCC
CATTTTACAGGGAATTACGTCCCGCGCTGCTCCATCCAAGCCGCCACCCT
TAATGACAATGACGAGGCTTCTGGCATTCTGCAATGGCTTACTGTGGCTC
GGGCACGGGCGCCGAAGGGGGATAAAATGGGGAGCAAGGCCACGGAAGAG
GAGCTGTCGCATGTGGAGCGGGTTGGGTCAGAGGAGTGGACAACAGTGCT
GCCTTTCACAACCCTTGGTGCTGGCTACAAGGATACGTGCCATAACTACT
TTAATGTAACGACAAAAGAGCGGTTTACGCACTTGAGGCTGAACATGTTT
CCAGATGGGGGCATAGCGCGGTTGAGGGTGTACGGGGAGGTGGCAAGAGA
TTGGGATATGGTGCCCACGTCACAGCTCCTTGACTTGGCAGCGGCGGAGA
ATGGAGGGAAGGCCGTGGGGTGCAGTGATAAACATTATGGCCACCCACGG
AATTTGATAAACCCCGGGAGGGGTATCAACATGGGAGATGGGTGGGAAAC
GGCACGAAAGCTGACAAGGCCGCCGGTGTTGGAGCCGGGGGAGGGAGGGT
TGATTAAGGTACCTGGAAGTGATTATGCGATTTTGCGGCTCGGAACGCTG
GGGAAGGTTGAGCAGTTGGAAATTGATACGAAATGGTTCAAGGGAAATTA
TCCTGAAAGCTGTCAGGTGGAGGGGGTGAGGTTGTCGACCTTGATGACAA
ATAGAGAGGTCTTGACGGCGGAGGGACAGGGACAGATTGAGTGGAAGGTG
CTGCTAAGGCGGACGAAGCTTGGGCCGGACTGCCAGGCGTGGTTCGAGGA
GGGGGGCGATGAGGGGGAGGAGATGGAGGGGGGGGTAGGGCCGGTTACTC
ATTTGAAGCTAACCATATACCCGGATGGAGGCATTTCACGGTTGCGCGCA
TTGGGGAGGCGGGTGCCAGAAAACGGAGGTCACTAGGCGGTGGGTGCCGG
GCTGAGTCGTGGAGAAATGATGCATTGAGGAAAGTTGATTAGGAACACGA
TAAGACACTTGTAAAGCACACAGGGAAGGCGATTAGAGGTCTAGGCCGCT
GTGAGAGAGAAAGAGGCAGTTGGCCTCAAAGTGCTGTCGTGTGTGCAGAT
TTGCGTCCTTGAGAAGATGAGGATAAAGAGGATGACGTAGGAAACAGAAC
TTACATAATTTAAAGAAAGCCAGTGAATGTCATTA
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protein sequence of jgi.p|Nanoce1779_2|552698

>mRNA_3357-protein ID=mRNA_3357-protein|Name=jgi.p|Nanoce1779_2|552698|organism=Nannochloropsis oceanica|type=polypeptide|length=412bp
MADRPIILTGTAAPPDFVEETDLALGRFGAKVCFATDDWFAAAENMLNHE
EPVFIAEKFTTCGKWMDGWETRRKRIAGHDWCIIKMAFPGRIMGIDVDTS
HFTGNYVPRCSIQAATLNDNDEASGILQWLTVARARAPKGDKMGSKATEE
ELSHVERVGSEEWTTVLPFTTLGAGYKDTCHNYFNVTTKERFTHLRLNMF
PDGGIARLRVYGEVARDWDMVPTSQLLDLAAAENGGKAVGCSDKHYGHPR
NLINPGRGINMGDGWETARKLTRPPVLEPGEGGLIKVPGSDYAILRLGTL
GKVEQLEIDTKWFKGNYPESCQVEGVRLSTLMTNREVLTAEGQGQIEWKV
LLRRTKLGPDCQAWFEEGGDEGEEMEGGVGPVTHLKLTIYPDGGISRLRA
LGRRVPENGGH*
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mRNA from alignment at scaffold_6:115237..116930-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3357 ID=mRNA_3357|Name=jgi.p|Nanoce1779_2|552698|organism=Nannochloropsis oceanica|type=mRNA|length=1694bp|location=Sequence derived from alignment at scaffold_6:115237..116930- (Nannochloropsis oceanica)
ATGGCCGATCGCCCCATCATACTCACCGGCACAGCTGCGCCGCCTGATTT
TGTGGAAGAGACGGATTTGGCCTTGGGACGGTTTGGTGCTAAGGTGTGTT
TTGCGACCGACGACTGGTTCGCCGCGGCGGAAAACATGCTTAATCATGAA
GAGCCTGTGTTTATCGCAGAGAAATTCACGACCTGCGGCAAGTGGATGGA
CGGGTGGGAGACTCGGCGGAAGCGTATTGCAGGCCATGATTGGTGCATTA
TTAAGATGGCATTCCCGGGGCGCATTATGGGGATCGATGTGGATACGTCC
CATTTTACAGGGAATTACGTCCCGCGCTGCTCCATCCAAGCCGCCACCCT
TAATGACAATGACGAGGCTTCTGGCATTCTGCAATGGCTTACTGTGGCTC
GGGCACGGGCGCCGAAGGGGGATAAAATGGGGAGCAAGGCCACGGAAGAG
GAGCTGTCGCATGTGGAGCGGGTTGGGTCAGAGGAGTGGACAACAGTGCT
GCCTTTCACAACCCTTGGTGCTGGCTACAAGGATACGTGCCATAACTACT
TTAATGTAACGACAAAAGAGCGGTTTACGCACTTGAGGCTGAACATGTTT
CCAGATGGGGGCATAGCGCGGTTGAGGGTGTACGGGGAGGTGGCAAGAGA
TTGGGATATGGTGCCCACGTCACAGCTCCTTGACTTGGCAGCGGCGGAGA
ATGGAGGGAAGGCCGTGGGGTGCAGTGATAAACATTATGGCCACCCACGG
AATTTGATAAACCCCGGGAGGGGTATCAACATGGGAGATGGGTGGGAAAC
GGCACGAAAGCTGACAAGGCCGCCGGTGTTGGAGCCGGGGGAGGGAGGGT
TGATTAAGGTACCTGGAAGTGATTATGCGATTTTGCGGCTCGGAACGCTG
GGGAAGGTTGAGCAGTTGGAAATTGATACGAAATGGTTCAAGGGAAATTA
TCCTGAAAGCTGTCAGGTGGAGGGGGTGAGGTTGTCGACCTTGATGACAA
ATAGAGAGGTCTTGACGGCGGAGGGACAGGGACAGATTGAGTGGAAGGTG
CTGCTAAGGCGGACGAAGCTTGGGCCGGACTGCCAGGCGTGGTTCGAGGA
GGGGGGCGATGAGGGGGAGGAGATGGAGGGGGGGGTAGGGCCGGTTACTC
ATTTGAAGCTAACCATATACCCGGATGGAGGCATTTCACGGTTGCGCGCA
TTGGGGAGGCGGGTGCCAGAAAACGGAGGTAGGCGAGAGGTGGAGGTGGC
GCGGTTGTGAGGCAGGGAAGGGGGATTGCATGACGAATGTATGTATGATA
TGTATATGAACGCGAGTATGGTGCTTGACTAGAAAGGCTTATTGGTGTGC
GGGTATCTGTCTTTGAATTATACGAGAAGGCGTGACGTAGTAGACTGACA
TTTTGACGCTCTCCTCCAACCTATTTAATATGTGCAGGTCACTAGGCGGT
GGGTGCCGGGCTGAGTCGTGGAGAAATGATGCATTGAGGAAAGTTGATTA
GGAACACGATAAGACACTTGTAAAGCACACAGGGAAGGCGATTAGAGGTC
TAGGCCGCTGTGAGAGAGAAAGAGGCAGTTGGCCTCAAAGTGCTGTCGTG
TGTGCAGATTTGCGTCCTTGAGAAGATGAGGATAAAGAGGATGACGTAGG
AAACAGAACTTACATAATTTAAAGAAAGCCAGTGAATGTCATTA
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Coding sequence (CDS) from alignment at scaffold_6:115237..116930-

>mRNA_3357 ID=mRNA_3357|Name=jgi.p|Nanoce1779_2|552698|organism=Nannochloropsis oceanica|type=CDS|length=2472bp|location=Sequence derived from alignment at scaffold_6:115237..116930- (Nannochloropsis oceanica)
GTCACTAGATGGCCGATCGCCCCATCATACTCACCGGCACAGCTGCGCCG
CCTGATTTTGTGGAAGAGACGGATTTGGCCTTGGGACGGTTTGGTGCTAA
GGTGTGTTTTGCGACCGACGACTGGTTCGCCGCGGCGGAAAACATGCTTA
ATCATGAAGAGCCTGTGTTTATCGCAGAGAAATTCACGACCTGCGGCAAG
TGGATGGACGGGTGGGAGACTCGGCGGAAGCGTATTGCAGGCCATGATTG
GTGCATTATTAAGATGGCATTCCCGGGGCGCATTATGGGGATCGATGTGG
ATACGTCCCATTTTACAGGGAATTACGTCCCGCGCTGCTCCATCCAAGCC
GCCACCCTTAATGACAATGACGAGGCTTCTGGCATTCTGCAATGGCTTAC
TGTGGCTCGGGCACGGGCGCCGAAGGGGGATAAAATGGGGAGCAAGGCCA
CGGAAGAGGAGCTGTCGCATGTGGAGCGGGTTGGGTCAGAGGAGTGGACA
ACAGTGCTGCCTTTCACAACCCTTGGTGCTGGCTACAAGGATACGTGCCA
TAACTACTTTAATGTAACGACAAAAGAGCGGTTTACGCACTTGAGGCTGA
ACATGTTTCCAGATGGGGGCATAGCGCGGTTGAGGGTGTACGGGGAGGTG
GCAAGAGATTGGGATATGGTGCCCACGTCACAGCTCCTTGACTTGGCAGC
GGCGGAGAATGGAGGGAAGGCCGTGGGGTGCAGTGATAAACATTATGGCC
ACCCACGGAATTTGATAAACCCCGGGAGGGGTATCAACATGGGAGATGGG
TGGGAAACGGCACGAAAGCTGACAAGGCCGCCGGTGTTGGAGCCGGGGGA
GGGAGGGTTGATTAAGGTACCTGGAAGTGATTATGCGATTTTGCGGCTCG
GAACGCTGGGGAAGGTTGAGCAGTTGGAAATTGATACGAAATGGTTCAAG
GGAAATTATCCTGAAAGCTGTCAGGTGGAGGGGGTGAGGTTGTCGACCTT
GATGACAAATAGAGAGGTCTTGACGGCGGAGGGACAGGGACAGATTGAGT
GGAAGGTGCTGCTAAGGCGGACGAAGCTTGGGCCGGACTGCCAGGCGTGG
TTCGAGGAGGGGGGCGATGAGGGGGAGGAGATGGAGGGGGGGGTAGGGCC
GGTTACTCATTTGAAGCTAACCATATACCCGGATGGAGGCATTTCACGGT
TGCGCGCATTGGGGAGGCGGGTGCCAGAAAACGGAGGTCACTAGATGGCC
GATCGCCCCATCATACTCACCGGCACAGCTGCGCCGCCTGATTTTGTGGA
AGAGACGGATTTGGCCTTGGGACGGTTTGGTGCTAAGGTGTGTTTTGCGA
CCGACGACTGGTTCGCCGCGGCGGAAAACATGCTTAATCATGAAGAGCCT
GTGTTTATCGCAGAGAAATTCACGACCTGCGGCAAGTGGATGGACGGGTG
GGAGACTCGGCGGAAGCGTATTGCAGGCCATGATTGGTGCATTATTAAGA
TGGCATTCCCGGGGCGCATTATGGGGATCGATGTGGATACGTCCCATTTT
ACAGGGAATTACGTCCCGCGCTGCTCCATCCAAGCCGCCACCCTTAATGA
CAATGACGAGGCTTCTGGCATTCTGCAATGGCTTACTGTGGCTCGGGCAC
GGGCGCCGAAGGGGGATAAAATGGGGAGCAAGGCCACGGAAGAGGAGCTG
TCGCATGTGGAGCGGGTTGGGTCAGAGGAGTGGACAACAGTGCTGCCTTT
CACAACCCTTGGTGCTGGCTACAAGGATACGTGCCATAACTACTTTAATG
TAACGACAAAAGAGCGGTTTACGCACTTGAGGCTGAACATGTTTCCAGAT
GGGGGCATAGCGCGGTTGAGGGTGTACGGGGAGGTGGCAAGAGATTGGGA
TATGGTGCCCACGTCACAGCTCCTTGACTTGGCAGCGGCGGAGAATGGAG
GGAAGGCCGTGGGGTGCAGTGATAAACATTATGGCCACCCACGGAATTTG
ATAAACCCCGGGAGGGGTATCAACATGGGAGATGGGTGGGAAACGGCACG
AAAGCTGACAAGGCCGCCGGTGTTGGAGCCGGGGGAGGGAGGGTTGATTA
AGGTACCTGGAAGTGATTATGCGATTTTGCGGCTCGGAACGCTGGGGAAG
GTTGAGCAGTTGGAAATTGATACGAAATGGTTCAAGGGAAATTATCCTGA
AAGCTGTCAGGTGGAGGGGGTGAGGTTGTCGACCTTGATGACAAATAGAG
AGGTCTTGACGGCGGAGGGACAGGGACAGATTGAGTGGAAGGTGCTGCTA
AGGCGGACGAAGCTTGGGCCGGACTGCCAGGCGTGGTTCGAGGAGGGGGG
CGATGAGGGGGAGGAGATGGAGGGGGGGGTAGGGCCGGTTACTCATTTGA
AGCTAACCATATACCCGGATGGAGGCATTTCACGGTTGCGCGCATTGGGG
AGGCGGGTGCCAGAAAACGGAG
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Synonyms
Publications