jgi.p|Nanoce1779_2|581876, mRNA_3356 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|581876
Unique Name	mRNA_3356
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1722
Alignment location	scaffold_6:113521..115242 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	581962
Track	FilteredModels2
ProteinId	581876

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:113521..115242 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581876	gene_3356	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581876	mRNA_3356-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3356	CDS_3356	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:113521..115242+
coding sequence from alignment at scaffold_6:113521..115242+

mRNA sequence

>mRNA_3356 ID=mRNA_3356|Name=jgi.p|Nanoce1779_2|581876|organism=Nannochloropsis oceanica|type=mRNA|length=1722bp
CCGGAGTTGAACCCACCGTTTCACCAAACGCACGCGTTTTTCGATGGACT
TTGCAACCAGCAAATCGTCGGTCATGTACCCTCTCAAGGGAGGATAATGT
AATAAATATCTACAGAGAGAGTAAATCTTCTTAGAGTGATGTTCTGCTGC
TGCTATCTAGGCGTTGCATTTCCCCGTCTGAGCCAGTTTACCTTGCTCCT
TATACACCCCCTCCACTACAACTACACATCGACAATTCCACTACCTACAG
GATGCTATCGTCAGCACAGGACGGCAGCGATGAGTACTCCCTGCTGGAAA
AGAATGATGTTATAGGGTCGTCTACGTTCTGCATTTCCGGTTCATCTTTT
TACCACACCAATTCTGAAAGCCTGCAGCACACACCTGATCTCTGTGCTCC
TGTCGAGGCCTCTCCGCTACCTGCGGCTGTCCGTCTACGAAATTGCCTAC
ATTCCAGCCTACAAAACCGCTATTTTTGGGCAAATCTTGTCTATTTGTTT
TACTGTACATGCATGCTCTGCGTCGATTTCGTCGATTACGGCAAGGAAAC
TAATGACAAGCTGTACTACTTCTTTGGCATGGTCCACTTCCTCAACGCGT
GGATGTATTGGTACGCCTGGAAAGACGTTCGGTGGCGGGACCCAATCTTA
TATCCAGAATATTTAAATGTCGTCGGTGCAGCCCTCTACCTGTGGTCATC
CAGCCTCTACCGCCGCGAGTCCGGCCCGCACGACGCCGCCACCTCCCACA
TTCACGTCATTGAGACCTGTGCGGCGATCGTCGAGTTGCTCGCCTGCGTC
GGATGGGCCTTCACGTGGCATCTGACCTATGAACGCGTCCCAGGGCGAGG
CTATACATTGGATGATCCTGACGTGTGGGCATTGCTGACGATATTTGCTG
CAGCCATTACGTATGTAGTGTATAACTTGCAGATCCTGGCGCACCCCGAT
TGGTACAGCGACAATGAGGTGTATTTTTTGGGTGACATTTCCTATGCGAT
GAATGGGGTGCTCTATTTATTGGCAGGGCTGAGGGATGACGGATGGTTTT
GGTGGATGCCCTTAATGGGAAATTTCTACACCTTTGCTCCATCTTCCTCT
TCCCCTTCATCGATGGGTGTGGAGGCGCAGGAAGAGGAGATGAAATCTCC
CTTGCTGGCTGTGGTGGTTAGAAGAGAGAAAGTGGAAAAGAAAGAGCGGC
AGAATCAAATTTGGAACGCATGGGGCATGCCGCGGAAAAAGATTCAAGGG
TTCGGGATGATAGAAGAGAGTGGTACCAGAGGAGCAATTGCTTAAGGGAA
GAAGCACGGACATGTCTGTCGTTGTCGTTACCGGAATTACACCAGAGAAG
AAAAACGAGGAGAAATGTAGAGATCTATAATGATTAAGAATGGGAGAGAG
TAGGTATTGGTGCATGTATAAGTCATCTCCCAACCCCCGTGGTGAGGGTG
GGTTGGTGAGGAGAAGAAATAGAATTGAGTAATGCATACAACGAGCCTTG
GAGGCTTTGGTGTGTGAGAGCAAGCACGAGGAGGGCAGCTGCAATAAGTA
GGTAGGAAGATGGAAGAAGAGAAAATGCTGGGAGTAAAACTCCTTTTGCT
TGTTCCTCACGCAGTATGACTCAAATGTGAGTACCAAATGATGCATCCGG
GCACAGCTTGCGTAAATGAATATAGCAAAGCAATGGATACGAAGTTAATT
TCAAATGAGAACCGATTAATGA

protein sequence of jgi.p|Nanoce1779_2|581876

>mRNA_3356-protein ID=mRNA_3356-protein|Name=jgi.p|Nanoce1779_2|581876|organism=Nannochloropsis oceanica|type=polypeptide|length=348bp
MLSSAQDGSDEYSLLEKNDVIGSSTFCISGSSFYHTNSESLQHTPDLCAP
VEASPLPAAVRLRNCLHSSLQNRYFWANLVYLFYCTCMLCVDFVDYGKET
NDKLYYFFGMVHFLNAWMYWYAWKDVRWRDPILYPEYLNVVGAALYLWSS
SLYRRESGPHDAATSHIHVIETCAAIVELLACVGWAFTWHLTYERVPGRG
YTLDDPDVWALLTIFAAAITYVVYNLQILAHPDWYSDNEVYFLGDISYAM
NGVLYLLAGLRDDGWFWWMPLMGNFYTFAPSSSSPSSMGVEAQEEEMKSP
LLAVVVRREKVEKKERQNQIWNAWGMPRKKIQGFGMIEESGTRGAIA*

mRNA from alignment at scaffold_6:113521..115242+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3356 ID=mRNA_3356|Name=jgi.p|Nanoce1779_2|581876|organism=Nannochloropsis oceanica|type=mRNA|length=1722bp|location=Sequence derived from alignment at scaffold_6:113521..115242+ (Nannochloropsis oceanica)
CCGGAGTTGAACCCACCGTTTCACCAAACGCACGCGTTTTTCGATGGACT
TTGCAACCAGCAAATCGTCGGTCATGTACCCTCTCAAGGGAGGATAATGT
AATAAATATCTACAGAGAGAGTAAATCTTCTTAGAGTGATGTTCTGCTGC
TGCTATCTAGGCGTTGCATTTCCCCGTCTGAGCCAGTTTACCTTGCTCCT
TATACACCCCCTCCACTACAACTACACATCGACAATTCCACTACCTACAG
GATGCTATCGTCAGCACAGGACGGCAGCGATGAGTACTCCCTGCTGGAAA
AGAATGATGTTATAGGGTCGTCTACGTTCTGCATTTCCGGTTCATCTTTT
TACCACACCAATTCTGAAAGCCTGCAGCACACACCTGATCTCTGTGCTCC
TGTCGAGGCCTCTCCGCTACCTGCGGCTGTCCGTCTACGAAATTGCCTAC
ATTCCAGCCTACAAAACCGCTATTTTTGGGCAAATCTTGTCTATTTGTTT
TACTGTACATGCATGCTCTGCGTCGATTTCGTCGATTACGGCAAGGAAAC
TAATGACAAGCTGTACTACTTCTTTGGCATGGTCCACTTCCTCAACGCGT
GGATGTATTGGTACGCCTGGAAAGACGTTCGGTGGCGGGACCCAATCTTA
TATCCAGAATATTTAAATGTCGTCGGTGCAGCCCTCTACCTGTGGTCATC
CAGCCTCTACCGCCGCGAGTCCGGCCCGCACGACGCCGCCACCTCCCACA
TTCACGTCATTGAGACCTGTGCGGCGATCGTCGAGTTGCTCGCCTGCGTC
GGATGGGCCTTCACGTGGCATCTGACCTATGAACGCGTCCCAGGGCGAGG
CTATACATTGGATGATCCTGACGTGTGGGCATTGCTGACGATATTTGCTG
CAGCCATTACGTATGTAGTGTATAACTTGCAGATCCTGGCGCACCCCGAT
TGGTACAGCGACAATGAGGTGTATTTTTTGGGTGACATTTCCTATGCGAT
GAATGGGGTGCTCTATTTATTGGCAGGGCTGAGGGATGACGGATGGTTTT
GGTGGATGCCCTTAATGGGAAATTTCTACACCTTTGCTCCATCTTCCTCT
TCCCCTTCATCGATGGGTGTGGAGGCGCAGGAAGAGGAGATGAAATCTCC
CTTGCTGGCTGTGGTGGTTAGAAGAGAGAAAGTGGAAAAGAAAGAGCGGC
AGAATCAAATTTGGAACGCATGGGGCATGCCGCGGAAAAAGATTCAAGGG
TTCGGGATGATAGAAGAGAGTGGTACCAGAGGAGCAATTGCTTAAGGGAA
GAAGCACGGACATGTCTGTCGTTGTCGTTACCGGAATTACACCAGAGAAG
AAAAACGAGGAGAAATGTAGAGATCTATAATGATTAAGAATGGGAGAGAG
TAGGTATTGGTGCATGTATAAGTCATCTCCCAACCCCCGTGGTGAGGGTG
GGTTGGTGAGGAGAAGAAATAGAATTGAGTAATGCATACAACGAGCCTTG
GAGGCTTTGGTGTGTGAGAGCAAGCACGAGGAGGGCAGCTGCAATAAGTA
GGTAGGAAGATGGAAGAAGAGAAAATGCTGGGAGTAAAACTCCTTTTGCT
TGTTCCTCACGCAGTATGACTCAAATGTGAGTACCAAATGATGCATCCGG
GCACAGCTTGCGTAAATGAATATAGCAAAGCAATGGATACGAAGTTAATT
TCAAATGAGAACCGATTAATGA

Coding sequence (CDS) from alignment at scaffold_6:113521..115242+

>mRNA_3356 ID=mRNA_3356|Name=jgi.p|Nanoce1779_2|581876|organism=Nannochloropsis oceanica|type=CDS|length=1044bp|location=Sequence derived from alignment at scaffold_6:113521..115242+ (Nannochloropsis oceanica)
ATGCTATCGTCAGCACAGGACGGCAGCGATGAGTACTCCCTGCTGGAAAA
GAATGATGTTATAGGGTCGTCTACGTTCTGCATTTCCGGTTCATCTTTTT
ACCACACCAATTCTGAAAGCCTGCAGCACACACCTGATCTCTGTGCTCCT
GTCGAGGCCTCTCCGCTACCTGCGGCTGTCCGTCTACGAAATTGCCTACA
TTCCAGCCTACAAAACCGCTATTTTTGGGCAAATCTTGTCTATTTGTTTT
ACTGTACATGCATGCTCTGCGTCGATTTCGTCGATTACGGCAAGGAAACT
AATGACAAGCTGTACTACTTCTTTGGCATGGTCCACTTCCTCAACGCGTG
GATGTATTGGTACGCCTGGAAAGACGTTCGGTGGCGGGACCCAATCTTAT
ATCCAGAATATTTAAATGTCGTCGGTGCAGCCCTCTACCTGTGGTCATCC
AGCCTCTACCGCCGCGAGTCCGGCCCGCACGACGCCGCCACCTCCCACAT
TCACGTCATTGAGACCTGTGCGGCGATCGTCGAGTTGCTCGCCTGCGTCG
GATGGGCCTTCACGTGGCATCTGACCTATGAACGCGTCCCAGGGCGAGGC
TATACATTGGATGATCCTGACGTGTGGGCATTGCTGACGATATTTGCTGC
AGCCATTACGTATGTAGTGTATAACTTGCAGATCCTGGCGCACCCCGATT
GGTACAGCGACAATGAGGTGTATTTTTTGGGTGACATTTCCTATGCGATG
AATGGGGTGCTCTATTTATTGGCAGGGCTGAGGGATGACGGATGGTTTTG
GTGGATGCCCTTAATGGGAAATTTCTACACCTTTGCTCCATCTTCCTCTT
CCCCTTCATCGATGGGTGTGGAGGCGCAGGAAGAGGAGATGAAATCTCCC
TTGCTGGCTGTGGTGGTTAGAAGAGAGAAAGTGGAAAAGAAAGAGCGGCA
GAATCAAATTTGGAACGCATGGGGCATGCCGCGGAAAAAGATTCAAGGGT
TCGGGATGATAGAAGAGAGTGGTACCAGAGGAGCAATTGCTTAA

Synonyms

Publications