jgi.p|Nanoce1779_2|581849, mRNA_3351 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|581849
Unique Name	mRNA_3351
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	849
Alignment location	scaffold_6:92715..94085 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	581935
Track	FilteredModels2
ProteinId	581849

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:92715..94085 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581849	gene_3351	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581849	mRNA_3351-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3351	CDS_3351	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:92715..94085+
coding sequence from alignment at scaffold_6:92715..94085+

mRNA sequence

>mRNA_3351 ID=mRNA_3351|Name=jgi.p|Nanoce1779_2|581849|organism=Nannochloropsis oceanica|type=mRNA|length=849bp
ACAGCACACACACGCACACCCACACACGACACAATGATGATAAACAAGAC
GATGGTGTAACATAGAGAAACACAGCTTTACTCGACATAAACCGCCGGCC
TCCTCACCCCACCCGATCGGAATCATGACCATCTCTACTAAGACGACGCC
GCCCCTCGAGGAGTCGCCCGCGGAGCTCCCTGATCTAGACCACCTGACAA
TGGCAGACTTCAGGCACATTTACGAGCCTTCAGATGATACGTTTTTGCTT
ATGGACACCCTGGAAGCCGATGTGGTATCCCTTCAAGCCCTGCGGCCCCG
CATTGTGGTGGAAATAGGCTCCGGCAGTGGCTGTGCTACGGCCGTGTTGG
CACGCACCCTAACCAAGGCATTGGGCCCTTCCCATCAAACCCTCTTCTTC
GCCACCGACATCAACGAACGAGCAATTCGCGCGACTCGAGCCACAGCTGT
AGCCAACCACATCCACAACCTCGAAACCCTTCAAATCGACCTCCTTCTCC
CCCTCCTCCCCCGTCTCCTCCACTCCATCGACATCCTCCTCTTCAACCCT
CCATATGTCCCCACCCCCTCCTCCGAAGTCGGATCTCGAGGCATCGAGGC
CAGCTGGGCGGGAGGAGAAGACGGGAGGGAGGTTTTGGACAGGCTTCTTC
CCTCCATCCCTTTATTGCTTTCACCTGACGGCGGGTGTATGTACCTGGTG
GCAGTGAATGAGAATAGGCCGGAGGAGATTTGCGCGATGATGAGGAAGGC
GGGTTTGCAGGCTAAGGCGGTCCGCACCCGCAAGGCTCGGAATGAGGTCC
TGACCATCCTCAAGTTCATTCGGCCTTGACCATGAAAGGGAAAGGGGGG

protein sequence of jgi.p|Nanoce1779_2|581849

>mRNA_3351-protein ID=mRNA_3351-protein|Name=jgi.p|Nanoce1779_2|581849|organism=Nannochloropsis oceanica|type=polypeptide|length=235bp
MTISTKTTPPLEESPAELPDLDHLTMADFRHIYEPSDDTFLLMDTLEADV
VSLQALRPRIVVEIGSGSGCATAVLARTLTKALGPSHQTLFFATDINERA
IRATRATAVANHIHNLETLQIDLLLPLLPRLLHSIDILLFNPPYVPTPSS
EVGSRGIEASWAGGEDGREVLDRLLPSIPLLLSPDGGCMYLVAVNENRPE
EICAMMRKAGLQAKAVRTRKARNEVLTILKFIRP*

mRNA from alignment at scaffold_6:92715..94085+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3351 ID=mRNA_3351|Name=jgi.p|Nanoce1779_2|581849|organism=Nannochloropsis oceanica|type=mRNA|length=1371bp|location=Sequence derived from alignment at scaffold_6:92715..94085+ (Nannochloropsis oceanica)
ACAGCACACACACGCACACCCACACACGACACAATGATGATAAACAAGAC
GATGGTGTAACATAGAGAAACACAGCTTTACTCGACATAAACCGCCGGCC
TCCTCACCCCACCCGATCGGAATCATGACCATCTCTACTAAGACGACGCC
GCCCCTCGAGGAGTCGCCCGCGGAGCTCCCTGATCTAGACCACCTGACAA
TGGCAGACTTCAGGCACATTTACGAGCCTTCAGATGATACGTTTTTGCTT
ATGGACACCCTGGAAGCCGATGTGGTATCCCTTCAAGCCCTGCGGCCCCG
CATTGTGGTGGAAATAGGGTACGTGCATGTGTATAAGACGGAATACATAG
GTCGAGCTTATGATAAGTGAGGTCGTTCTTGCAGCCCCCCCTCCTTTATA
TCTGTGCATGTGTTAAACTATGTCTGCTCTCTGGCATGATATACTGATGA
CAGGGAGGGAGGAAGGGCAGCCATTGATCAAGACATGAGAAGATGAGAAG
ACGGAGAGAATGAATCCAACTCACCCACACACCCATGTACACCCACCCAC
CCCACTCAGCTCCGGCAGTGGCTGTGCTACGGCCGTGTTGGCACGCACCC
TAACCAAGGCATTGGGCCCTTCCCATCAAACCCTCTTCTTCGCCACCGAC
ATCAACGAACGAGCAATTCGCGCGACTCGAGCCACAGCTGTAGCCAACCA
CGTGCGTCTTATTCGCGAGCGACTGTTTCTTCTCTCCCTCCTTTCCCTTC
TTGATCCCTTCATGCTCTTGCCCTTCTTCTTCCCCTGTCACGCAATCACT
CACCCAGCCAGTCCTTTCCCTCCTCCCCTCCTCAGATCCACAACCTCGAA
ACCCTTCAAATCGACCTCCTTCTCCCCCTCCTCCCCCGTCTCCTCCACTC
CATCGACATCCTCCTCTTCAACCCTCCATATGTCCCCACCCCCTCCTCCG
AAGTCGGATCTCGAGGCATCGAGGCCAGCTGGGCGGGAGGAGAAGACGGG
AGGGAGGTTTTGGACAGGCTTCTTCCCTCCATCCCTTTATTGCTTTCACC
TGACGGCGGGTGTATGTACCTGGTGGCAGTGAATGAGAATAGGCCGGAGG
AGATTTGCGCGATGATGAGGAAGGCGGGTTTGCAGGCTAAGGTAGGAGGG
AATGGGAGGGAGGTTAGGTAAGAGTGTATGGGCGAGGAATGTGGATCATT
TCCGTGGTGATCGTTTTGATTGGCGTCATTACAAAGGAGGCTCATTGTCT
GTCACACATTCTCTACCTGCCCCTATATTTCAATCTAGGCGGTCCGCACC
CGCAAGGCTCGGAATGAGGTCCTGACCATCCTCAAGTTCATTCGGCCTTG
ACCATGAAAGGGAAAGGGGGG

Coding sequence (CDS) from alignment at scaffold_6:92715..94085+

>mRNA_3351 ID=mRNA_3351|Name=jgi.p|Nanoce1779_2|581849|organism=Nannochloropsis oceanica|type=CDS|length=2820bp|location=Sequence derived from alignment at scaffold_6:92715..94085+ (Nannochloropsis oceanica)
ATGACCATCTCTACTAAGACGACGCCGCCCCTCGAGGAGTCGCCCGCGGA
GCTCCCTGATCTAGACCACCTGACAATGGCAGACTTCAGGCACATTTACG
AGCCTTCAGATGATACGTTTTTGCTTATGGACACCCTGGAAGCCGATGTG
GTATCCCTTCAAGCCCTGCGGCCCCGCATTGTGGTGGAAATAGGCTCCGG
CAGTGGCTGTGCTACGGCCGTGTTGGCACGCACCCTAACCAAGGCATTGG
GCCCTTCCCATCAAACCCTCTTCTTCGCCACCGACATCAACGAACGAGCA
ATTCGCGCGACTCGAGCCACAGCTGTAGCCAACCACATCCACAACCTCGA
AACCCTTCAAATCGACCTCCTTCTCCCCCTCCTCCCCCGTCTCCTCCACT
CCATCGACATCCTCCTCTTCAACCCTCCATATGTCCCCACCCCCTCCTCC
GAAGTCGGATCTCGAGGCATCGAGGCCAGCTGGGCGGGAGGAGAAGACGG
GAGGGAGGTTTTGGACAGGCTTCTTCCCTCCATCCCTTTATTGCTTTCAC
CTGACGGCGGGTGTATGTACCTGGTGGCAGTGAATGAGAATAGGCCGGAG
GAGATTTGCGCGATGATGAGGAAGGCGGGTTTGCAGGCTAAGGCGGTCCG
CACCCGCAAGGCTCGGAATGAGGTCCTGACCATCCTCAAGTTCATTCGGC
CTTGAATGACCATCTCTACTAAGACGACGCCGCCCCTCGAGGAGTCGCCC
GCGGAGCTCCCTGATCTAGACCACCTGACAATGGCAGACTTCAGGCACAT
TTACGAGCCTTCAGATGATACGTTTTTGCTTATGGACACCCTGGAAGCCG
ATGTGGTATCCCTTCAAGCCCTGCGGCCCCGCATTGTGGTGGAAATAGGC
TCCGGCAGTGGCTGTGCTACGGCCGTGTTGGCACGCACCCTAACCAAGGC
ATTGGGCCCTTCCCATCAAACCCTCTTCTTCGCCACCGACATCAACGAAC
GAGCAATTCGCGCGACTCGAGCCACAGCTGTAGCCAACCACATCCACAAC
CTCGAAACCCTTCAAATCGACCTCCTTCTCCCCCTCCTCCCCCGTCTCCT
CCACTCCATCGACATCCTCCTCTTCAACCCTCCATATGTCCCCACCCCCT
CCTCCGAAGTCGGATCTCGAGGCATCGAGGCCAGCTGGGCGGGAGGAGAA
GACGGGAGGGAGGTTTTGGACAGGCTTCTTCCCTCCATCCCTTTATTGCT
TTCACCTGACGGCGGGTGTATGTACCTGGTGGCAGTGAATGAGAATAGGC
CGGAGGAGATTTGCGCGATGATGAGGAAGGCGGGTTTGCAGGCTAAGGCG
GTCCGCACCCGCAAGGCTCGGAATGAGGTCCTGACCATCCTCAAGTTCAT
TCGGCCTTGAATGACCATCTCTACTAAGACGACGCCGCCCCTCGAGGAGT
CGCCCGCGGAGCTCCCTGATCTAGACCACCTGACAATGGCAGACTTCAGG
CACATTTACGAGCCTTCAGATGATACGTTTTTGCTTATGGACACCCTGGA
AGCCGATGTGGTATCCCTTCAAGCCCTGCGGCCCCGCATTGTGGTGGAAA
TAGGCTCCGGCAGTGGCTGTGCTACGGCCGTGTTGGCACGCACCCTAACC
AAGGCATTGGGCCCTTCCCATCAAACCCTCTTCTTCGCCACCGACATCAA
CGAACGAGCAATTCGCGCGACTCGAGCCACAGCTGTAGCCAACCACATCC
ACAACCTCGAAACCCTTCAAATCGACCTCCTTCTCCCCCTCCTCCCCCGT
CTCCTCCACTCCATCGACATCCTCCTCTTCAACCCTCCATATGTCCCCAC
CCCCTCCTCCGAAGTCGGATCTCGAGGCATCGAGGCCAGCTGGGCGGGAG
GAGAAGACGGGAGGGAGGTTTTGGACAGGCTTCTTCCCTCCATCCCTTTA
TTGCTTTCACCTGACGGCGGGTGTATGTACCTGGTGGCAGTGAATGAGAA
TAGGCCGGAGGAGATTTGCGCGATGATGAGGAAGGCGGGTTTGCAGGCTA
AGGCGGTCCGCACCCGCAAGGCTCGGAATGAGGTCCTGACCATCCTCAAG
TTCATTCGGCCTTGAATGACCATCTCTACTAAGACGACGCCGCCCCTCGA
GGAGTCGCCCGCGGAGCTCCCTGATCTAGACCACCTGACAATGGCAGACT
TCAGGCACATTTACGAGCCTTCAGATGATACGTTTTTGCTTATGGACACC
CTGGAAGCCGATGTGGTATCCCTTCAAGCCCTGCGGCCCCGCATTGTGGT
GGAAATAGGCTCCGGCAGTGGCTGTGCTACGGCCGTGTTGGCACGCACCC
TAACCAAGGCATTGGGCCCTTCCCATCAAACCCTCTTCTTCGCCACCGAC
ATCAACGAACGAGCAATTCGCGCGACTCGAGCCACAGCTGTAGCCAACCA
CATCCACAACCTCGAAACCCTTCAAATCGACCTCCTTCTCCCCCTCCTCC
CCCGTCTCCTCCACTCCATCGACATCCTCCTCTTCAACCCTCCATATGTC
CCCACCCCCTCCTCCGAAGTCGGATCTCGAGGCATCGAGGCCAGCTGGGC
GGGAGGAGAAGACGGGAGGGAGGTTTTGGACAGGCTTCTTCCCTCCATCC
CTTTATTGCTTTCACCTGACGGCGGGTGTATGTACCTGGTGGCAGTGAAT
GAGAATAGGCCGGAGGAGATTTGCGCGATGATGAGGAAGGCGGGTTTGCA
GGCTAAGGCGGTCCGCACCCGCAAGGCTCGGAATGAGGTCCTGACCATCC
TCAAGTTCATTCGGCCTTGA

Synonyms

Publications