jgi.p|Nanoce1779_2|237273, mRNA_335 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|237273
Unique Name	mRNA_335
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1437
Alignment location	scaffold_3:828255..830068 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	237359
Track	FilteredModels2
ProteinId	237273

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:828255..830068 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|237273	gene_335	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|237273	mRNA_335-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_335	CDS_335	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:828255..830068+
coding sequence from alignment at scaffold_3:828255..830068+

mRNA sequence

>mRNA_335 ID=mRNA_335|Name=jgi.p|Nanoce1779_2|237273|organism=Nannochloropsis oceanica|type=mRNA|length=1437bp
TGGGTGGGTGAGATACGCAAACAACTCTCAAGCTCTTGGCGGGAGGTTTG
TCTTCGCGCTCTCTGAGTCCTCCTTGTGCTTCTTCGCCTTCTGTGTGTGT
CTGGTTCAATTCGGCACTGTCACACATTACGCAGAGCTCCAAGTCACATA
GCGACGCAGCATCGTGAGAAATATCCTTCAACGCCGCATTTACGGTACCA
CACCCGCCCTGGCCTCCGCACGACCGCAACCCAACAGTCAACGCCATCAC
CATCGCTGTCAAATCGCTGAGACGGCATTTCGTCGCTTCGCTGCTCAACT
CAACACCACCTCCACACACGCCAGGACACACTCTGCACCATCTAGGGCTC
GTGAGAGGTTTAAATACATGCGGCGGCTGTAGCTTGGGAGGATCTGGTGC
CAACTTTTGGCCAGTCAAGCTTCGCCATCATCATCATCATCATCACACGT
TAAGCCACTCCGCCTTATGTGTCTCCCGCCACTCTTCCTCCCTTCCTTCC
AACATCCGCCCCTCACAGCAAATGGCATTTGTTTTGTCCAGCGCTTCGAG
ACGAGCACTTGGTGCCGCTAGGGTAGGCTCGCTCTTGCAGCGCGCCTCCC
TCGCAAGTGTCATGACGGGTACACGAAGCATCGGCAGCGACTCGCGCGTA
GTGTGCATTACTTCTGGGAAAGGCGGCGTGGGCAAGACTACGACGGCAGC
CAGCATTGGAATGGGGCTAGCGTTGAAGGGAAAGAGGACTTGCGTGATTG
ATTTTGATATTGGTTTGCGTAACTTGGACATACATTTGGGCGCAGAACGA
AGAGTGATCTTCGATTTTGTCCACGTTCTGCACGGAGACTGCACGCTCAA
GCAAGCCATGATCAAGGACAAGCGCAATCCGAACTTGTACCTCCTGGCTG
CCTCACAAACCAAGGATAAGAACGCCCTGACCGTCGAAGGGGTCGGCAAG
ATGCTCGCGGAAATGCGGCGGGAATTCGACTTTATCATCTGTGATTCCCC
GGCTGGGATTGAGAGTGGGGCGAAGCACGCCATGTATTTCGCGGATGATG
CCATCATTGTGACAAATCCCGAGTTGAGCTCGTGCCGCGACAGCGACAAG
ATGATCGGTTTCATTTCCAGCAAGTCCAAACGGGCCGAGCTGGGCCAAGA
GCCCGTGCGGCAATCATTGCTAGTCACGCGATACGACCCCGAGCGGGCGG
AGAAAGAGGAATGCTTGCGGTTGGAGGATATCAAGGTACGTCTCTCGGCT
TGTAGGGGTGCTTGCTGGGAGCTTTAACTCAATATGAAGACAACATGGGA
AGTCTTCACTTATCCCGGCCCAACCCATACCATCTCTCTATCCCACCTTC
CCTCCCTCACGCCCTCTCCCATTCTACCCTTCTCGTCCTCCTCCTATCCC
TACAGGAACTCCTGGGGCTAGAGCTGCTGGGCGTGAT

protein sequence of jgi.p|Nanoce1779_2|237273

>mRNA_335-protein ID=mRNA_335-protein|Name=jgi.p|Nanoce1779_2|237273|organism=Nannochloropsis oceanica|type=polypeptide|length=252bp
MAFVLSSASRRALGAARVGSLLQRASLASVMTGTRSIGSDSRVVCITSGK
GGVGKTTTAASIGMGLALKGKRTCVIDFDIGLRNLDIHLGAERRVIFDFV
HVLHGDCTLKQAMIKDKRNPNLYLLAASQTKDKNALTVEGVGKMLAEMRR
EFDFIICDSPAGIESGAKHAMYFADDAIIVTNPELSSCRDSDKMIGFISS
KSKRAELGQEPVRQSLLVTRYDPERAEKEECLRLEDIKVRLSACRGACWE
L*

mRNA from alignment at scaffold_3:828255..830068+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_335 ID=mRNA_335|Name=jgi.p|Nanoce1779_2|237273|organism=Nannochloropsis oceanica|type=mRNA|length=1814bp|location=Sequence derived from alignment at scaffold_3:828255..830068+ (Nannochloropsis oceanica)
TGGGTGGGTGAGATACGCAAACAACTCTCAAGCTCTTGGCGGGAGGTTTG
TCTTCGCGCTCTCTGAGTCCTCCTTGTGCTTCTTCGCCTTCTGTGTGTGT
CTGGTTCAATTCGGCACTGTCACACATTACGCAGAGCTCCAAGTCACATA
GCGACGCAGCATCGTGAGAAATATCCTTCAACGCCGCATTTACGGTACCA
CACCCGCCCTGGCCTCCGCACGACCGCAACCCAACAGTCAACGCCATCAC
CATCGCTGTCAAATCGCTGAGACGGCATTTCGTCGCTTCGCTGCTCAACT
CAACACCACCTCCACACACGCCAGGACACACTCTGCACCATCTAGGGCTC
GTGAGAGGTTTAAATACATGCGGCGGCTGTAGCTTGGGAGGATCTGGTGC
CAACTTTTGGCCAGTCAAGCTTCGCCATCATCATCATCATCATCACACGT
TAAGCCACTCCGCCTTATGTGTCTCCCGCCACTCTTCCTCCCTTCCTTCC
AACATCCGCCCCTCACAGCAAATGGCATTTGTTTTGTCCAGCGCTTCGAG
ACGAGCACTTGGTGCCGCTAGGGTAGGCTCGCTCTTGCAGCGCGCCTCCC
TCGCAAGTGTCATGACGGGTACACGAAGCATCGGCAGCGACTCGCGCGTA
GTGTGCATTACTTCTGGGAAAGGCGGCGTGGGCAAGACTACGACGGCAGC
CAGCATTGGAATGGGGCTAGCGTTGAAGGGAAAGAGGACTTGCGTGATTG
ATTTTGATATTGGTTTGCGTAACTTGGACATACATTTGGTACGTGTGTGA
TGACGGGTGTAGCGAGGGTGGCAAGGGTGAGGTTTGATGTAGATCAATCG
CAGCAGACTACATTGCTCGAGGCCTTCTTCTACTTGTCCTCTTTATGTTT
ATTGTTATGTTCAATTTTGTTATTGCTATCACTCCCTTTTTTTAACCCAT
CCCTCCCCCCCTCTTTCATCGCACTCTAGGGCGCAGAACGAAGAGTGATC
TTCGATTTTGTCCACGTTCTGCACGGAGACTGCACGCTCAAGCAAGCCAT
GATCAAGGACAAGCGCAATCCGAACTTGTACCTCCTGGCTGCCTCACAAA
CCAAGGATAAGAACGCCCTGACCGTCGAAGGGGTCGGCAAGATGCTCGCG
GAAATGCGGCGGGAATTCGACTTTATCATCTGTGATTCCCCGGCTGGGAT
TGAGAGTGGGGCGAAGCACGCCATGTATTTCGCGGATGATGCCATCATTG
TGACAAATCCCGAGTTGAGCTCGTGCCGGTAGTTCTTAGGGCAGGGCGGG
CGGGCGGGCGGGAGGGAGGGAGGGAGGGAGAGAGGGAGGGAAGGAGGGTT
GCATGTGATCGATTCGTCTCTCATAACGCGAGGAATTTTGATAAATGATC
CCTCCCTTTCTCCTTCCCTCCTTCCCACCCTTCCACTCTTTCCCCTCCCT
CCCTTATCCCGCAGCGACAGCGACAAGATGATCGGTTTCATTTCCAGCAA
GTCCAAACGGGCCGAGCTGGGCCAAGAGCCCGTGCGGCAATCATTGCTAG
TCACGCGATACGACCCCGAGCGGGCGGAGAAAGAGGAATGCTTGCGGTTG
GAGGATATCAAGGTACGTCTCTCGGCTTGTAGGGGTGCTTGCTGGGAGCT
TTAACTCAATATGAAGACAACATGGGAAGTCTTCACTTATCCCGGCCCAA
CCCATACCATCTCTCTATCCCACCTTCCCTCCCTCACGCCCTCTCCCATT
CTACCCTTCTCGTCCTCCTCCTATCCCTACAGGAACTCCTGGGGCTAGAG
CTGCTGGGCGTGAT

Coding sequence (CDS) from alignment at scaffold_3:828255..830068+

>mRNA_335 ID=mRNA_335|Name=jgi.p|Nanoce1779_2|237273|organism=Nannochloropsis oceanica|type=CDS|length=2268bp|location=Sequence derived from alignment at scaffold_3:828255..830068+ (Nannochloropsis oceanica)
ATGGCATTTGTTTTGTCCAGCGCTTCGAGACGAGCACTTGGTGCCGCTAG
GGTAGGCTCGCTCTTGCAGCGCGCCTCCCTCGCAAGTGTCATGACGGGTA
CACGAAGCATCGGCAGCGACTCGCGCGTAGTGTGCATTACTTCTGGGAAA
GGCGGCGTGGGCAAGACTACGACGGCAGCCAGCATTGGAATGGGGCTAGC
GTTGAAGGGAAAGAGGACTTGCGTGATTGATTTTGATATTGGTTTGCGTA
ACTTGGACATACATTTGGGCGCAGAACGAAGAGTGATCTTCGATTTTGTC
CACGTTCTGCACGGAGACTGCACGCTCAAGCAAGCCATGATCAAGGACAA
GCGCAATCCGAACTTGTACCTCCTGGCTGCCTCACAAACCAAGGATAAGA
ACGCCCTGACCGTCGAAGGGGTCGGCAAGATGCTCGCGGAAATGCGGCGG
GAATTCGACTTTATCATCTGTGATTCCCCGGCTGGGATTGAGAGTGGGGC
GAAGCACGCCATGTATTTCGCGGATGATGCCATCATTGTGACAAATCCCG
AGTTGAGCTCGTGCCGCGACAGCGACAAGATGATCGGTTTCATTTCCAGC
AAGTCCAAACGGGCCGAGCTGGGCCAAGAGCCCGTGCGGCAATCATTGCT
AGTCACGCGATACGACCCCGAGCGGGCGGAGAAAGAGGAATGCTTGCGGT
TGGAGGATATCAAGGTACGTCTCTCGGCTTGTAGGGGTGCTTGCTGGGAG
CTTTAAATGGCATTTGTTTTGTCCAGCGCTTCGAGACGAGCACTTGGTGC
CGCTAGGGTAGGCTCGCTCTTGCAGCGCGCCTCCCTCGCAAGTGTCATGA
CGGGTACACGAAGCATCGGCAGCGACTCGCGCGTAGTGTGCATTACTTCT
GGGAAAGGCGGCGTGGGCAAGACTACGACGGCAGCCAGCATTGGAATGGG
GCTAGCGTTGAAGGGAAAGAGGACTTGCGTGATTGATTTTGATATTGGTT
TGCGTAACTTGGACATACATTTGGGCGCAGAACGAAGAGTGATCTTCGAT
TTTGTCCACGTTCTGCACGGAGACTGCACGCTCAAGCAAGCCATGATCAA
GGACAAGCGCAATCCGAACTTGTACCTCCTGGCTGCCTCACAAACCAAGG
ATAAGAACGCCCTGACCGTCGAAGGGGTCGGCAAGATGCTCGCGGAAATG
CGGCGGGAATTCGACTTTATCATCTGTGATTCCCCGGCTGGGATTGAGAG
TGGGGCGAAGCACGCCATGTATTTCGCGGATGATGCCATCATTGTGACAA
ATCCCGAGTTGAGCTCGTGCCGCGACAGCGACAAGATGATCGGTTTCATT
TCCAGCAAGTCCAAACGGGCCGAGCTGGGCCAAGAGCCCGTGCGGCAATC
ATTGCTAGTCACGCGATACGACCCCGAGCGGGCGGAGAAAGAGGAATGCT
TGCGGTTGGAGGATATCAAGGTACGTCTCTCGGCTTGTAGGGGTGCTTGC
TGGGAGCTTTAAATGGCATTTGTTTTGTCCAGCGCTTCGAGACGAGCACT
TGGTGCCGCTAGGGTAGGCTCGCTCTTGCAGCGCGCCTCCCTCGCAAGTG
TCATGACGGGTACACGAAGCATCGGCAGCGACTCGCGCGTAGTGTGCATT
ACTTCTGGGAAAGGCGGCGTGGGCAAGACTACGACGGCAGCCAGCATTGG
AATGGGGCTAGCGTTGAAGGGAAAGAGGACTTGCGTGATTGATTTTGATA
TTGGTTTGCGTAACTTGGACATACATTTGGGCGCAGAACGAAGAGTGATC
TTCGATTTTGTCCACGTTCTGCACGGAGACTGCACGCTCAAGCAAGCCAT
GATCAAGGACAAGCGCAATCCGAACTTGTACCTCCTGGCTGCCTCACAAA
CCAAGGATAAGAACGCCCTGACCGTCGAAGGGGTCGGCAAGATGCTCGCG
GAAATGCGGCGGGAATTCGACTTTATCATCTGTGATTCCCCGGCTGGGAT
TGAGAGTGGGGCGAAGCACGCCATGTATTTCGCGGATGATGCCATCATTG
TGACAAATCCCGAGTTGAGCTCGTGCCGCGACAGCGACAAGATGATCGGT
TTCATTTCCAGCAAGTCCAAACGGGCCGAGCTGGGCCAAGAGCCCGTGCG
GCAATCATTGCTAGTCACGCGATACGACCCCGAGCGGGCGGAGAAAGAGG
AATGCTTGCGGTTGGAGGATATCAAGGTACGTCTCTCGGCTTGTAGGGGT
GCTTGCTGGGAGCTTTAA

Synonyms

Publications