jgi.p|Nanoce1779_2|357998, mRNA_3349 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|357998
Unique Name	mRNA_3349
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1090
Alignment location	scaffold_6:88081..89170 +

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Properties


Property Name	Value
TranscriptId	358084
Track	FilteredModels2
ProteinId	357998

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:88081..89170 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|357998	gene_3349	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|357998	mRNA_3349-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3349	CDS_3349	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:88081..89170+
coding sequence from alignment at scaffold_6:88081..89170+

mRNA sequence

>mRNA_3349 ID=mRNA_3349|Name=jgi.p|Nanoce1779_2|357998|organism=Nannochloropsis oceanica|type=mRNA|length=1090bp
CAGCCGCCTCCGGGCCTGCGTTGACACGGGCGCCTCCACCACCGTGATGT
CCCTGGCCATGGCGAGGGAATGCGGCCTGCTCTCCCACATTGATACGTCG
GTGGTGGGGGGCGTGAAGGGCGTTGGATTTGCCAAGATCCTGGGATGTGT
GCACGAGGCCAAGATCCTGTGAGATGGGAGGGAGGGAGGGGGAGAGGGAA
GGGATGTCCTGCACTTATGTCGGGGGTGGATGGGGTGGATGGGTGCATCT
TTTTTCTTGTTATTTCTCGTCCTTTCTTTTTCTTTGCCCCTTATCGTTGG
CCAACCACAACATGAACCTGCTGAGGGCACTCACCCTCCTCCCCTTCCCT
CCCTCCCTCAGCCTGGGTCGGTTTCAGATCCAGACGCGGGTGTCGATCAT
CGACTCGCTCTCGCCCCCCTTTGTGATCGGACTGGATGTGCTACGGCACT
GCCAATGCGTCATCTCCTTCCAGGACAAGGTACGGAGGGTGGGAGGGTTA
GGAGGGAAGGAGGGAGGAAGCGCATTCATCCAAGCATCCCCTTCCACGAC
TCAACTCTCCTTCCTCTTCCTCCCTCCCTTCCTCCCTCCCTTCCTCCCTC
CCTCAGGTCCTCGTCCTTCGTAGCCTTGGCGGGGCCGTGGAGAAGAGCCG
GGAAGAAATCGTCCCTTTTTCCATCAGCGCTGTCCCTCCCCAAGTCTTTG
GAAAGGCGGATGGAAGGGAGAAGGGAGAGGAAGGAGGGGGGGGAGGAGGG
GCAGGAGCCGCAGAGGAGGAGGAAGAGCCTTTAGGGTCGTTGCCGCCGTC
GAGGGGAGGAGTGTCCATGGCAGGGATATGAAGGAGGGAGGAAGGGAGGG
AAGGGAGGTGTGAAATGCTATCGAGAGGACGTGCGAGAGACTGTCGGTAT
ATGCGTATGTGAGTGCTTTCTGAAGGAAAAACATGAATTTCGGTGAGAAA
GGAAAAAGATGCGAGAGTAAAAAGAAACGGAAAGACGGCGTGACTGTCTT
GAACGTTTATGTTCTAATTGATTGTATGGTTGAGATTAATTCGACAAAGA
ATTTTAATACATACACATGAGAGTAAGTCAGCGACCAACA

protein sequence of jgi.p|Nanoce1779_2|357998

>mRNA_3349-protein ID=mRNA_3349-protein|Name=jgi.p|Nanoce1779_2|357998|organism=Nannochloropsis oceanica|type=polypeptide|length=185bp
MGWMGASFFLLFLVLSFSLPLIVGQPQHEPAEGTHPPPLPSLPQPGSVSD
PDAGVDHRLALAPLCDRTGCATALPMRHLLPGQGTEGGRVRREGGRKRIH
PSIPFHDSTLLPLPPSLPPSLPPSLRSSSFVALAGPWRRAGKKSSLFPSA
LSLPKSLERRMEGRRERKEGGEEGQEPQRRRKSL*

mRNA from alignment at scaffold_6:88081..89170+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3349 ID=mRNA_3349|Name=jgi.p|Nanoce1779_2|357998|organism=Nannochloropsis oceanica|type=mRNA|length=1090bp|location=Sequence derived from alignment at scaffold_6:88081..89170+ (Nannochloropsis oceanica)
CAGCCGCCTCCGGGCCTGCGTTGACACGGGCGCCTCCACCACCGTGATGT
CCCTGGCCATGGCGAGGGAATGCGGCCTGCTCTCCCACATTGATACGTCG
GTGGTGGGGGGCGTGAAGGGCGTTGGATTTGCCAAGATCCTGGGATGTGT
GCACGAGGCCAAGATCCTGTGAGATGGGAGGGAGGGAGGGGGAGAGGGAA
GGGATGTCCTGCACTTATGTCGGGGGTGGATGGGGTGGATGGGTGCATCT
TTTTTCTTGTTATTTCTCGTCCTTTCTTTTTCTTTGCCCCTTATCGTTGG
CCAACCACAACATGAACCTGCTGAGGGCACTCACCCTCCTCCCCTTCCCT
CCCTCCCTCAGCCTGGGTCGGTTTCAGATCCAGACGCGGGTGTCGATCAT
CGACTCGCTCTCGCCCCCCTTTGTGATCGGACTGGATGTGCTACGGCACT
GCCAATGCGTCATCTCCTTCCAGGACAAGGTACGGAGGGTGGGAGGGTTA
GGAGGGAAGGAGGGAGGAAGCGCATTCATCCAAGCATCCCCTTCCACGAC
TCAACTCTCCTTCCTCTTCCTCCCTCCCTTCCTCCCTCCCTTCCTCCCTC
CCTCAGGTCCTCGTCCTTCGTAGCCTTGGCGGGGCCGTGGAGAAGAGCCG
GGAAGAAATCGTCCCTTTTTCCATCAGCGCTGTCCCTCCCCAAGTCTTTG
GAAAGGCGGATGGAAGGGAGAAGGGAGAGGAAGGAGGGGGGGGAGGAGGG
GCAGGAGCCGCAGAGGAGGAGGAAGAGCCTTTAGGGTCGTTGCCGCCGTC
GAGGGGAGGAGTGTCCATGGCAGGGATATGAAGGAGGGAGGAAGGGAGGG
AAGGGAGGTGTGAAATGCTATCGAGAGGACGTGCGAGAGACTGTCGGTAT
ATGCGTATGTGAGTGCTTTCTGAAGGAAAAACATGAATTTCGGTGAGAAA
GGAAAAAGATGCGAGAGTAAAAAGAAACGGAAAGACGGCGTGACTGTCTT
GAACGTTTATGTTCTAATTGATTGTATGGTTGAGATTAATTCGACAAAGA
ATTTTAATACATACACATGAGAGTAAGTCAGCGACCAACA

Coding sequence (CDS) from alignment at scaffold_6:88081..89170+

>mRNA_3349 ID=mRNA_3349|Name=jgi.p|Nanoce1779_2|357998|organism=Nannochloropsis oceanica|type=CDS|length=555bp|location=Sequence derived from alignment at scaffold_6:88081..89170+ (Nannochloropsis oceanica)
ATGGGGTGGATGGGTGCATCTTTTTTCTTGTTATTTCTCGTCCTTTCTTT
TTCTTTGCCCCTTATCGTTGGCCAACCACAACATGAACCTGCTGAGGGCA
CTCACCCTCCTCCCCTTCCCTCCCTCCCTCAGCCTGGGTCGGTTTCAGAT
CCAGACGCGGGTGTCGATCATCGACTCGCTCTCGCCCCCCTTTGTGATCG
GACTGGATGTGCTACGGCACTGCCAATGCGTCATCTCCTTCCAGGACAAG
GTACGGAGGGTGGGAGGGTTAGGAGGGAAGGAGGGAGGAAGCGCATTCAT
CCAAGCATCCCCTTCCACGACTCAACTCTCCTTCCTCTTCCTCCCTCCCT
TCCTCCCTCCCTTCCTCCCTCCCTCAGGTCCTCGTCCTTCGTAGCCTTGG
CGGGGCCGTGGAGAAGAGCCGGGAAGAAATCGTCCCTTTTTCCATCAGCG
CTGTCCCTCCCCAAGTCTTTGGAAAGGCGGATGGAAGGGAGAAGGGAGAG
GAAGGAGGGGGGGGAGGAGGGGCAGGAGCCGCAGAGGAGGAGGAAGAGCC
TTTAG

Synonyms

Publications