jgi.p|Nanoce1779_2|581841, mRNA_3348 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581841
Unique NamemRNA_3348
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length582
Alignment locationscaffold_6:86006..86587 -

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Properties
Property NameValue
TranscriptId581927
TrackFilteredModels2
ProteinId581841
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:86006..86587 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581841gene_3348Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581841mRNA_3348-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3348CDS_3348Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3348 ID=mRNA_3348|Name=jgi.p|Nanoce1779_2|581841|organism=Nannochloropsis oceanica|type=mRNA|length=582bp
GTGGTAAGTGAGTGCGGGTAACACAGCAGAAGCGGCATGGTTTTAGAGCG
TCTAGACGGTTTTCTGCAGGCCTGTGAAAGTCATGACATGGGCTTGCTAT
TTTTGCGTTCCGTTCTCTCTCTCGAGCTTCTGCCTCTCTGGCTTATGTCG
AACCAACCTTATATGCCTTCAAGTGACATGGCCTTCTTCTTGGATTACTC
TCGCGCTCTCACGCTCACACAAGGACACAAGTGTGGATGTGCAATCTGAT
CGGGCGATAGCGGACGCACGGAGGAAAAAATTTAGCGAGCTGCAGCACAC
GCCTTTTTGCTGCCGTACCTCTCTCTCTCCTTTCCTTCAGGCACGCACAA
AGTACGTCACGTTGCATTTGTTGCTGCATGAGCAAGCGGCAGCAACAAGT
ATCAAGTGCAGCCACCCAAACAAATCCTAAGACATCAAGTAATACAGCCC
TGGTTCTTCTCCTTCTACTCCCCCTTCTTCTCCTCCTCCTCCTGCTCTGC
CTTATGCGATCAAAAAGGCTTTTTGTCGCTAGCTTTTTTGCCACTTCGAG
ACACTAAAAATTAACTATCCTCAACAAGCATC
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protein sequence of jgi.p|Nanoce1779_2|581841

>mRNA_3348-protein ID=mRNA_3348-protein|Name=jgi.p|Nanoce1779_2|581841|organism=Nannochloropsis oceanica|type=polypeptide|length=116bp
MTWACYFCVPFSLSSFCLSGLCRTNLICLQVTWPSSWITLALSRSHKDTS
VDVQSDRAIADARRKKFSELQHTPFCCRTSLSPFLQARTKYVTLHLLLHE
QAAATSIKCSHPNKS*
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mRNA from alignment at scaffold_6:86006..86587-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3348 ID=mRNA_3348|Name=jgi.p|Nanoce1779_2|581841|organism=Nannochloropsis oceanica|type=mRNA|length=582bp|location=Sequence derived from alignment at scaffold_6:86006..86587- (Nannochloropsis oceanica)
GTGGTAAGTGAGTGCGGGTAACACAGCAGAAGCGGCATGGTTTTAGAGCG
TCTAGACGGTTTTCTGCAGGCCTGTGAAAGTCATGACATGGGCTTGCTAT
TTTTGCGTTCCGTTCTCTCTCTCGAGCTTCTGCCTCTCTGGCTTATGTCG
AACCAACCTTATATGCCTTCAAGTGACATGGCCTTCTTCTTGGATTACTC
TCGCGCTCTCACGCTCACACAAGGACACAAGTGTGGATGTGCAATCTGAT
CGGGCGATAGCGGACGCACGGAGGAAAAAATTTAGCGAGCTGCAGCACAC
GCCTTTTTGCTGCCGTACCTCTCTCTCTCCTTTCCTTCAGGCACGCACAA
AGTACGTCACGTTGCATTTGTTGCTGCATGAGCAAGCGGCAGCAACAAGT
ATCAAGTGCAGCCACCCAAACAAATCCTAAGACATCAAGTAATACAGCCC
TGGTTCTTCTCCTTCTACTCCCCCTTCTTCTCCTCCTCCTCCTGCTCTGC
CTTATGCGATCAAAAAGGCTTTTTGTCGCTAGCTTTTTTGCCACTTCGAG
ACACTAAAAATTAACTATCCTCAACAAGCATC
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Coding sequence (CDS) from alignment at scaffold_6:86006..86587-

>mRNA_3348 ID=mRNA_3348|Name=jgi.p|Nanoce1779_2|581841|organism=Nannochloropsis oceanica|type=CDS|length=348bp|location=Sequence derived from alignment at scaffold_6:86006..86587- (Nannochloropsis oceanica)
ATGACATGGGCTTGCTATTTTTGCGTTCCGTTCTCTCTCTCGAGCTTCTG
CCTCTCTGGCTTATGTCGAACCAACCTTATATGCCTTCAAGTGACATGGC
CTTCTTCTTGGATTACTCTCGCGCTCTCACGCTCACACAAGGACACAAGT
GTGGATGTGCAATCTGATCGGGCGATAGCGGACGCACGGAGGAAAAAATT
TAGCGAGCTGCAGCACACGCCTTTTTGCTGCCGTACCTCTCTCTCTCCTT
TCCTTCAGGCACGCACAAAGTACGTCACGTTGCATTTGTTGCTGCATGAG
CAAGCGGCAGCAACAAGTATCAAGTGCAGCCACCCAAACAAATCCTAA
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Synonyms
Publications