jgi.p|Nanoce1779_2|581836, mRNA_3347 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581836
Unique NamemRNA_3347
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length380
Alignment locationscaffold_6:83939..85127 +

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Properties
Property NameValue
TranscriptId581922
TrackFilteredModels2
ProteinId581836
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:83939..85127 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581836gene_3347Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581836mRNA_3347-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3347CDS_3347Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3347 ID=mRNA_3347|Name=jgi.p|Nanoce1779_2|581836|organism=Nannochloropsis oceanica|type=mRNA|length=380bp
ACAGGAAAGATGGTCAAGGCAGCCAAGGCACCCAAGACCGACGTGGTCAC
TAGGCTCTACACCATCAACCTGCACAAGCGTCTGCACAAGATCACCTTCA
AGGAGCGTGCCCCCCGTGCCATTCGCGAGATCAAGAAGTTTGCGATCAAG
GCCCTGGGCACCAAGGATGTCCGCGTCGACACTGGCCTGAACAAGTTTAT
CTGGAAGCAAGGTATCCGCAATGTGCCTTTTAGGGTCCGCGTCAAGCTCG
CCCGCCGACGCAACGAGGATGAGGAGGCGACGGAGAAGCTGTACACACTG
GTGACGCTTGTGGAGGTGGACAGCTTCAAGGGCTTGCAGAACGCTTCCGT
TGACGAGTAGAGGGTCCGGAAAAGGGAGGG
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protein sequence of jgi.p|Nanoce1779_2|581836

>mRNA_3347-protein ID=mRNA_3347-protein|Name=jgi.p|Nanoce1779_2|581836|organism=Nannochloropsis oceanica|type=polypeptide|length=117bp
MVKAAKAPKTDVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALG
TKDVRVDTGLNKFIWKQGIRNVPFRVRVKLARRRNEDEEATEKLYTLVTL
VEVDSFKGLQNASVDE*
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mRNA from alignment at scaffold_6:83939..85127+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3347 ID=mRNA_3347|Name=jgi.p|Nanoce1779_2|581836|organism=Nannochloropsis oceanica|type=mRNA|length=1189bp|location=Sequence derived from alignment at scaffold_6:83939..85127+ (Nannochloropsis oceanica)
ACAGGAAAGATGGTCAAGGCAGCCAAGGCACCCAAGACCGACGTGGTCAC
TAGGTATGTTGCATGGATACGGGCAACAAGGGGAGGAAGGGAGAGAGATG
GTGGAGGATGGGGAAGCTGAGGTTTCCAGGAGAAAAAGGAGACGGCCGTA
AGAAGCAGCCCCGCCATCTTACGTGCAAGTCCTGCTTGAAAGCCACCTCA
TGGGTTGGGACTGGTTTGCGGTGCTTGCTCCGGTCAAAATCGATTGTCTC
TCATGAAAATTCCCTACGCCCATGCCTACGCTCATTTCTCCTAGTCACCA
GAAGCAACCCTCCTCACTCACTCCTTCCTCTACGATCGATCGCCCCACTT
TCCCCTCTTTCCTGCACAGGCTCTACACCATCAACCTGCACAAGCGTCTG
CACAAGATCACCTTCAAGGAGCGTGCCCCCCGTGCCATTCGCGAGATCAA
GAAGTTTGCGATCAAGGCCCTGGGCACCAAGGATGTCCGCGTCGACACTG
GGTGCGTAGCCGCCCTCCCTCCCTCCCTCCCTCTCTCCGTCCCTCCCTCC
CTCCCTCTCTTCTCTTTTTTTCTCCTTTCGTGGGGCTCATCTATTTTCCT
CCTGGGGCTCAGGCCATCAAATATGGACGGTCTAGTGTTTGCATGACCGC
GTCGTCACCAGTATCGCGTGCGTGCTTCCTCCACTCACTCACCTTCCTCC
CCTTTCTCTCTCCCTCTGCATCTCCTTCTCACTCAGCCTGAACAAGTTTA
TCTGGAAGCAAGGTATCCGCAATGTGCCTTTTAGGGTCCGCGTCAAGCTC
GCCCGCCGACGCAACGAGGATGAGGAGGCGACGGAGAAGGTGAGGAGGAA
GGGAGGGAGGGAGGAAGGGACAGAAAAGAGGGGTGCGACAACAGGGAGAT
CGACAAAAGGAAGATAGCAGGAGGGGTAGACACGGTTTAGAGAGAATCGG
AAGGAAAGGTTGGGAAGGAAGGAGGTGGGAAGGAAGGAGGGAGGGAAGGA
AGATATGGCCTTCGGGCACACATTATATTACTGTAGACGTACTGAACCCC
CTTTCCTCCCTCTCTCCCTCTCTCTTCCCATTTCTTTTATTTGACAGCTG
TACACACTGGTGACGCTTGTGGAGGTGGACAGCTTCAAGGGCTTGCAGAA
CGCTTCCGTTGACGAGTAGAGGGTCCGGAAAAGGGAGGG
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Coding sequence (CDS) from alignment at scaffold_6:83939..85127+

>mRNA_3347 ID=mRNA_3347|Name=jgi.p|Nanoce1779_2|581836|organism=Nannochloropsis oceanica|type=CDS|length=1404bp|location=Sequence derived from alignment at scaffold_6:83939..85127+ (Nannochloropsis oceanica)
ATGGTCAAGGCAGCCAAGGCACCCAAGACCGACGTGGTCACTAGGCTCTA
CACCATCAACCTGCACAAGCGTCTGCACAAGATCACCTTCAAGGAGCGTG
CCCCCCGTGCCATTCGCGAGATCAAGAAGTTTGCGATCAAGGCCCTGGGC
ACCAAGGATGTCCGCGTCGACACTGGCCTGAACAAGTTTATCTGGAAGCA
AGGTATCCGCAATGTGCCTTTTAGGGTCCGCGTCAAGCTCGCCCGCCGAC
GCAACGAGGATGAGGAGGCGACGGAGAAGCTGTACACACTGGTGACGCTT
GTGGAGGTGGACAGCTTCAAGGGCTTGCAGAACGCTTCCGTTGACGAGTA
GATGGTCAAGGCAGCCAAGGCACCCAAGACCGACGTGGTCACTAGGCTCT
ACACCATCAACCTGCACAAGCGTCTGCACAAGATCACCTTCAAGGAGCGT
GCCCCCCGTGCCATTCGCGAGATCAAGAAGTTTGCGATCAAGGCCCTGGG
CACCAAGGATGTCCGCGTCGACACTGGCCTGAACAAGTTTATCTGGAAGC
AAGGTATCCGCAATGTGCCTTTTAGGGTCCGCGTCAAGCTCGCCCGCCGA
CGCAACGAGGATGAGGAGGCGACGGAGAAGCTGTACACACTGGTGACGCT
TGTGGAGGTGGACAGCTTCAAGGGCTTGCAGAACGCTTCCGTTGACGAGT
AGATGGTCAAGGCAGCCAAGGCACCCAAGACCGACGTGGTCACTAGGCTC
TACACCATCAACCTGCACAAGCGTCTGCACAAGATCACCTTCAAGGAGCG
TGCCCCCCGTGCCATTCGCGAGATCAAGAAGTTTGCGATCAAGGCCCTGG
GCACCAAGGATGTCCGCGTCGACACTGGCCTGAACAAGTTTATCTGGAAG
CAAGGTATCCGCAATGTGCCTTTTAGGGTCCGCGTCAAGCTCGCCCGCCG
ACGCAACGAGGATGAGGAGGCGACGGAGAAGCTGTACACACTGGTGACGC
TTGTGGAGGTGGACAGCTTCAAGGGCTTGCAGAACGCTTCCGTTGACGAG
TAGATGGTCAAGGCAGCCAAGGCACCCAAGACCGACGTGGTCACTAGGCT
CTACACCATCAACCTGCACAAGCGTCTGCACAAGATCACCTTCAAGGAGC
GTGCCCCCCGTGCCATTCGCGAGATCAAGAAGTTTGCGATCAAGGCCCTG
GGCACCAAGGATGTCCGCGTCGACACTGGCCTGAACAAGTTTATCTGGAA
GCAAGGTATCCGCAATGTGCCTTTTAGGGTCCGCGTCAAGCTCGCCCGCC
GACGCAACGAGGATGAGGAGGCGACGGAGAAGCTGTACACACTGGTGACG
CTTGTGGAGGTGGACAGCTTCAAGGGCTTGCAGAACGCTTCCGTTGACGA
GTAG
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Synonyms
Publications