jgi.p|Nanoce1779_2|581822, mRNA_3343 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|581822
Unique Name	mRNA_3343
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1146
Alignment location	scaffold_6:66658..68310 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	581908
Track	FilteredModels2
ProteinId	581822

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:66658..68310 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581822	gene_3343	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581822	mRNA_3343-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3343	CDS_3343	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:66658..68310+
coding sequence from alignment at scaffold_6:66658..68310+

mRNA sequence

>mRNA_3343 ID=mRNA_3343|Name=jgi.p|Nanoce1779_2|581822|organism=Nannochloropsis oceanica|type=mRNA|length=1146bp
CAGCCACAAGCCACCGCAGGCAACCCCTTCTCCCCAAGAGCATCATGTTT
AGCTCTCTTTTGAGCGGCACTTTAGGCGAGATCCTGGCGCCTTCCCCTTC
TGTATCCGCTGAGAAGAAGGAACCATCATCAGAGCAGGAGCAGCAGGAGC
AGCAGCAACAGGAAGCAAGCGGTCAGGGTGCGCAAACCTACTCGATTCCA
CGGCAAGAAGAGGACGCAGCAGCGCGTGCAAGTGTGAACAAGACCCTCGC
GGATGCCTCAACGCTCTTTCCCTTTCCCGAGGTCGAGAAGAGAGCCGCCC
CCTCTCCTTCGCCTACCGGTGTGACCCCTACTGCCGCCATGACAGACCCC
GCGGCTACAGACGTGACGGGCATGCTCGCCAACCTGTCGCTCGCGGATGA
GAAGAAAGAGCAAGAGCAAGAGCAACAGACCGGTCGACAGAGCGCGGCAG
CCGTCCTGATGCCTCCCCCTCCCCCTCCGTCGATGTCCAACTCTTCCTCC
CTGGCCTCTTTGCGCCCCCCGCCGCCCACCCCAGGAGTCACTCCCCCCAG
CTCTAAAATTGAGAATGAAGGAGAAGGTGATAGAGGTGATAGCATCAATA
GCAACCTTCTTCCTGCCTTCGCCACGCCTTCCAAGCAGACGCCGGGTACG
GGCAGGAAGGGGTCTGCGGCCCGTCGGCGCTATACGGTCAGTCCGATGCT
CTCCCGCACACCCAAAAAGATGGAGCCGAGGTTGGGAGACATGGTGCTGA
AGGCGGCCGTCGACACCGCAGCGTGTCTGACGAGCCCCATCAGTGACTGG
AAGAAGCAGAAGGCCGTCTTTGATGCCTGTGCGCTTTCGCGGGCCACCCC
CGAGCATAACAAGATACAAGCCCTTGCTTCCTCCCTCGCCTCCGAGCCGT
CTCTTGCCAAGGCCCGTAGCACGCGTTTGGCGATGCTCGCTCCTGATGGA
CAGACACCCCTCCACTGTGCCGCGGCGATGAACAACATGACTGCGCTTAA
TTTATTGCTCCTAGCGCCGGAGACAGACTGCTTTGCCGTGGACTTGCAGG
GTCGGACAGCCCTCCACCTCGCCGCTACCAACGGTCACCTGGAAGCCTGC
CGTCTTCTAAAGCACGAGATGACGCGTAGAGCCGAGGGAGGGAGGG

protein sequence of jgi.p|Nanoce1779_2|581822

>mRNA_3343-protein ID=mRNA_3343-protein|Name=jgi.p|Nanoce1779_2|581822|organism=Nannochloropsis oceanica|type=polypeptide|length=367bp
MFSSLLSGTLGEILAPSPSVSAEKKEPSSEQEQQEQQQQEASGQGAQTYS
IPRQEEDAAARASVNKTLADASTLFPFPEVEKRAAPSPSPTGVTPTAAMT
DPAATDVTGMLANLSLADEKKEQEQEQQTGRQSAAAVLMPPPPPPSMSNS
SSLASLRPPPPTPGVTPPSSKIENEGEGDRGDSINSNLLPAFATPSKQTP
GTGRKGSAARRRYTVSPMLSRTPKKMEPRLGDMVLKAAVDTAACLTSPIS
DWKKQKAVFDACALSRATPEHNKIQALASSLASEPSLAKARSTRLAMLAP
DGQTPLHCAAAMNNMTALNLLLLAPETDCFAVDLQGRTALHLAATNGHLE
ACRLLKHEMTRRAEGGR

mRNA from alignment at scaffold_6:66658..68310+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3343 ID=mRNA_3343|Name=jgi.p|Nanoce1779_2|581822|organism=Nannochloropsis oceanica|type=mRNA|length=1653bp|location=Sequence derived from alignment at scaffold_6:66658..68310+ (Nannochloropsis oceanica)
CAGCCACAAGCCACCGCAGGCAACCCCTTCTCCCCAAGAGCATCATGTTT
AGCTCTCTTTTGAGCGGCACTTTAGGCGAGATCCTGGCGCCTTCCCCTTC
TGTATCCGCTGAGAAGAAGGAACCATCATCAGAGCAGGAGCAGCAGGAGC
AGCAGCAACAGGAAGCAAGCGGTCAGGGTGCGCAAACCTACTCGATTCCA
CGGCAAGAAGAGGACGCAGCAGCGCGTGCAAGTGTGAACAAGACCCTCGC
GGATGCCTCAACGCTCTTTCCCTTTCCCGAGGTCGAGAAGAGAGCCGCCC
CCTCTCCTTCGCCTACCGGTGTGACCCCTACTGCCGCCATGACAGACCCC
GCGGCTACAGACGTGACGGGCATGCTCGCCAACCTGTCGCTCGCGGATGA
GAAGAAAGAGCAAGAGCAAGAGCAACAGACCGGTCGACAGAGCGCGGCAG
CCGTCCTGATGCCTCCCCCTCCCCCTCCGTCGATGTCCAACTCTTCCTCC
CTGGCCTCTTTGCGCCCCCCGCCGCCCACCCCAGGAGTCACTCCCCCCAG
CTCTAAAATTGAGAATGAAGGAGAAGGTGATAGAGGTGATAGCATCAATA
GCAACCTTCTTCCTGCCTTCGCCACGCCTTCCAAGCAGACGCCGGGTACG
GGCAGGAAGGGGTCTGCGGCCCGTCGGCGCTATACGGTCAGTCCGATGCT
CTCCCGCACACCCAAAAAGATGGAGCCGAGGTTGGGAGACATGGTGCTGA
AGGTAGGCCAGGAAGGAAGGAGGGAAGGAGGGAAGGAAGGAGAGACACTC
ACGCACCGACAAGGAGTCACACTCACGCATCGACACAACGATTCTAACGC
GCCATATGCCTGTGGACTGTGGATCCCGTCCCTCCCCCCCCCCTCCCCCC
CTGTAGGCGGCCGTCGACACCGCAGCGTGTCTGACGAGCCCCATCAGTGA
CTGGAAGAAGCAGAAGGCCGTCTTTGATGCCTGTGCGCTTTCGCGGGCCA
CCCCCGAGCATAACAAGATACAAGTATGGAGGGGGTAGGGAGGAAGGAGG
GAGGGAAGGAGGGAGGAAGGAAGACGGCCCAGCCAGGTCCAACGGGGAGA
AAGTTTCCATCACGCCGCTTCCTTTCAATCCCTCCCTCCCGCCCTCAATC
CCTCCCTCCCCCAGGCCCTTGCTTCCTCCCTCGCCTCCGAGCCGTCTCTT
GCCAAGGCCCGTAGCACGCGTTTGGCGATGCTCGCTCCTGATGGACAGAC
ACCCCTCCACTGTGCCGCGGCGATGAACAACATGACTGCGCTTAATTTAT
TGCTCCTAGCGCCGGAGACAGACTGCTTTGCCGTGGACTTGCAGGGGTGA
GGAAGGAGGGAGGGAGGGAGGGAGCGAGAGAGGGAGGGAGGGCTTGAGGG
AGGGAAGGGAGGGGGAGACCTCATGTAAACATCACCCACCCCCATTGGAG
TCTCTGACATATGCTTCGACGTGCACCCTCTCATGCACACAAAACCTTCC
CGCCTCCTCCTTTCCCTCCCTTCCGCCCTCTCTCCCTCTTTCCCTGCCTC
CTCCCTAGTCGGACAGCCCTCCACCTCGCCGCTACCAACGGTCACCTGGA
AGCCTGCCGTCTTCTAAAGCACGAGATGACGCGTAGAGCCGAGGGAGGGA
GGG

Coding sequence (CDS) from alignment at scaffold_6:66658..68310+

>mRNA_3343 ID=mRNA_3343|Name=jgi.p|Nanoce1779_2|581822|organism=Nannochloropsis oceanica|type=CDS|length=4408bp|location=Sequence derived from alignment at scaffold_6:66658..68310+ (Nannochloropsis oceanica)
ATGTTTAGCTCTCTTTTGAGCGGCACTTTAGGCGAGATCCTGGCGCCTTC
CCCTTCTGTATCCGCTGAGAAGAAGGAACCATCATCAGAGCAGGAGCAGC
AGGAGCAGCAGCAACAGGAAGCAAGCGGTCAGGGTGCGCAAACCTACTCG
ATTCCACGGCAAGAAGAGGACGCAGCAGCGCGTGCAAGTGTGAACAAGAC
CCTCGCGGATGCCTCAACGCTCTTTCCCTTTCCCGAGGTCGAGAAGAGAG
CCGCCCCCTCTCCTTCGCCTACCGGTGTGACCCCTACTGCCGCCATGACA
GACCCCGCGGCTACAGACGTGACGGGCATGCTCGCCAACCTGTCGCTCGC
GGATGAGAAGAAAGAGCAAGAGCAAGAGCAACAGACCGGTCGACAGAGCG
CGGCAGCCGTCCTGATGCCTCCCCCTCCCCCTCCGTCGATGTCCAACTCT
TCCTCCCTGGCCTCTTTGCGCCCCCCGCCGCCCACCCCAGGAGTCACTCC
CCCCAGCTCTAAAATTGAGAATGAAGGAGAAGGTGATAGAGGTGATAGCA
TCAATAGCAACCTTCTTCCTGCCTTCGCCACGCCTTCCAAGCAGACGCCG
GGTACGGGCAGGAAGGGGTCTGCGGCCCGTCGGCGCTATACGGTCAGTCC
GATGCTCTCCCGCACACCCAAAAAGATGGAGCCGAGGTTGGGAGACATGG
TGCTGAAGGCGGCCGTCGACACCGCAGCGTGTCTGACGAGCCCCATCAGT
GACTGGAAGAAGCAGAAGGCCGTCTTTGATGCCTGTGCGCTTTCGCGGGC
CACCCCCGAGCATAACAAGATACAAGCCCTTGCTTCCTCCCTCGCCTCCG
AGCCGTCTCTTGCCAAGGCCCGTAGCACGCGTTTGGCGATGCTCGCTCCT
GATGGACAGACACCCCTCCACTGTGCCGCGGCGATGAACAACATGACTGC
GCTTAATTTATTGCTCCTAGCGCCGGAGACAGACTGCTTTGCCGTGGACT
TGCAGGGTCGGACAGCCCTCCACCTCGCCGCTACCAACGGTCACCTGGAA
GCCTGCCGTCTTCTAAAGCACGAGATGACGCGTAGAGCCGAGGGAGGGAG
GGATGTTTAGCTCTCTTTTGAGCGGCACTTTAGGCGAGATCCTGGCGCCT
TCCCCTTCTGTATCCGCTGAGAAGAAGGAACCATCATCAGAGCAGGAGCA
GCAGGAGCAGCAGCAACAGGAAGCAAGCGGTCAGGGTGCGCAAACCTACT
CGATTCCACGGCAAGAAGAGGACGCAGCAGCGCGTGCAAGTGTGAACAAG
ACCCTCGCGGATGCCTCAACGCTCTTTCCCTTTCCCGAGGTCGAGAAGAG
AGCCGCCCCCTCTCCTTCGCCTACCGGTGTGACCCCTACTGCCGCCATGA
CAGACCCCGCGGCTACAGACGTGACGGGCATGCTCGCCAACCTGTCGCTC
GCGGATGAGAAGAAAGAGCAAGAGCAAGAGCAACAGACCGGTCGACAGAG
CGCGGCAGCCGTCCTGATGCCTCCCCCTCCCCCTCCGTCGATGTCCAACT
CTTCCTCCCTGGCCTCTTTGCGCCCCCCGCCGCCCACCCCAGGAGTCACT
CCCCCCAGCTCTAAAATTGAGAATGAAGGAGAAGGTGATAGAGGTGATAG
CATCAATAGCAACCTTCTTCCTGCCTTCGCCACGCCTTCCAAGCAGACGC
CGGGTACGGGCAGGAAGGGGTCTGCGGCCCGTCGGCGCTATACGGTCAGT
CCGATGCTCTCCCGCACACCCAAAAAGATGGAGCCGAGGTTGGGAGACAT
GGTGCTGAAGGCGGCCGTCGACACCGCAGCGTGTCTGACGAGCCCCATCA
GTGACTGGAAGAAGCAGAAGGCCGTCTTTGATGCCTGTGCGCTTTCGCGG
GCCACCCCCGAGCATAACAAGATACAAGCCCTTGCTTCCTCCCTCGCCTC
CGAGCCGTCTCTTGCCAAGGCCCGTAGCACGCGTTTGGCGATGCTCGCTC
CTGATGGACAGACACCCCTCCACTGTGCCGCGGCGATGAACAACATGACT
GCGCTTAATTTATTGCTCCTAGCGCCGGAGACAGACTGCTTTGCCGTGGA
CTTGCAGGGTCGGACAGCCCTCCACCTCGCCGCTACCAACGGTCACCTGG
AAGCCTGCCGTCTTCTAAAGCACGAGATGACGCGTAGAGCCGAGGGAGGG
AGGGATGTTTAGCTCTCTTTTGAGCGGCACTTTAGGCGAGATCCTGGCGC
CTTCCCCTTCTGTATCCGCTGAGAAGAAGGAACCATCATCAGAGCAGGAG
CAGCAGGAGCAGCAGCAACAGGAAGCAAGCGGTCAGGGTGCGCAAACCTA
CTCGATTCCACGGCAAGAAGAGGACGCAGCAGCGCGTGCAAGTGTGAACA
AGACCCTCGCGGATGCCTCAACGCTCTTTCCCTTTCCCGAGGTCGAGAAG
AGAGCCGCCCCCTCTCCTTCGCCTACCGGTGTGACCCCTACTGCCGCCAT
GACAGACCCCGCGGCTACAGACGTGACGGGCATGCTCGCCAACCTGTCGC
TCGCGGATGAGAAGAAAGAGCAAGAGCAAGAGCAACAGACCGGTCGACAG
AGCGCGGCAGCCGTCCTGATGCCTCCCCCTCCCCCTCCGTCGATGTCCAA
CTCTTCCTCCCTGGCCTCTTTGCGCCCCCCGCCGCCCACCCCAGGAGTCA
CTCCCCCCAGCTCTAAAATTGAGAATGAAGGAGAAGGTGATAGAGGTGAT
AGCATCAATAGCAACCTTCTTCCTGCCTTCGCCACGCCTTCCAAGCAGAC
GCCGGGTACGGGCAGGAAGGGGTCTGCGGCCCGTCGGCGCTATACGGTCA
GTCCGATGCTCTCCCGCACACCCAAAAAGATGGAGCCGAGGTTGGGAGAC
ATGGTGCTGAAGGCGGCCGTCGACACCGCAGCGTGTCTGACGAGCCCCAT
CAGTGACTGGAAGAAGCAGAAGGCCGTCTTTGATGCCTGTGCGCTTTCGC
GGGCCACCCCCGAGCATAACAAGATACAAGCCCTTGCTTCCTCCCTCGCC
TCCGAGCCGTCTCTTGCCAAGGCCCGTAGCACGCGTTTGGCGATGCTCGC
TCCTGATGGACAGACACCCCTCCACTGTGCCGCGGCGATGAACAACATGA
CTGCGCTTAATTTATTGCTCCTAGCGCCGGAGACAGACTGCTTTGCCGTG
GACTTGCAGGGTCGGACAGCCCTCCACCTCGCCGCTACCAACGGTCACCT
GGAAGCCTGCCGTCTTCTAAAGCACGAGATGACGCGTAGAGCCGAGGGAG
GGAGGGATGTTTAGCTCTCTTTTGAGCGGCACTTTAGGCGAGATCCTGGC
GCCTTCCCCTTCTGTATCCGCTGAGAAGAAGGAACCATCATCAGAGCAGG
AGCAGCAGGAGCAGCAGCAACAGGAAGCAAGCGGTCAGGGTGCGCAAACC
TACTCGATTCCACGGCAAGAAGAGGACGCAGCAGCGCGTGCAAGTGTGAA
CAAGACCCTCGCGGATGCCTCAACGCTCTTTCCCTTTCCCGAGGTCGAGA
AGAGAGCCGCCCCCTCTCCTTCGCCTACCGGTGTGACCCCTACTGCCGCC
ATGACAGACCCCGCGGCTACAGACGTGACGGGCATGCTCGCCAACCTGTC
GCTCGCGGATGAGAAGAAAGAGCAAGAGCAAGAGCAACAGACCGGTCGAC
AGAGCGCGGCAGCCGTCCTGATGCCTCCCCCTCCCCCTCCGTCGATGTCC
AACTCTTCCTCCCTGGCCTCTTTGCGCCCCCCGCCGCCCACCCCAGGAGT
CACTCCCCCCAGCTCTAAAATTGAGAATGAAGGAGAAGGTGATAGAGGTG
ATAGCATCAATAGCAACCTTCTTCCTGCCTTCGCCACGCCTTCCAAGCAG
ACGCCGGGTACGGGCAGGAAGGGGTCTGCGGCCCGTCGGCGCTATACGGT
CAGTCCGATGCTCTCCCGCACACCCAAAAAGATGGAGCCGAGGTTGGGAG
ACATGGTGCTGAAGGCGGCCGTCGACACCGCAGCGTGTCTGACGAGCCCC
ATCAGTGACTGGAAGAAGCAGAAGGCCGTCTTTGATGCCTGTGCGCTTTC
GCGGGCCACCCCCGAGCATAACAAGATACAAGCCCTTGCTTCCTCCCTCG
CCTCCGAGCCGTCTCTTGCCAAGGCCCGTAGCACGCGTTTGGCGATGCTC
GCTCCTGATGGACAGACACCCCTCCACTGTGCCGCGGCGATGAACAACAT
GACTGCGCTTAATTTATTGCTCCTAGCGCCGGAGACAGACTGCTTTGCCG
TGGACTTGCAGGGTCGGACAGCCCTCCACCTCGCCGCTACCAACGGTCAC
CTGGAAGCCTGCCGTCTTCTAAAGCACGAGATGACGCGTAGAGCCGAGGG
AGGGAGGG

Synonyms

Publications