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Properties
Property Name | Value |
TranscriptId | 581903 |
Track | FilteredModels2 |
ProteinId | 581817 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_6 | supercontig | scaffold_6:64156..66286 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3342 ID=mRNA_3342|Name=jgi.p|Nanoce1779_2|581817|organism=Nannochloropsis oceanica|type=mRNA|length=1365bp CAGGACCGCCATTCGTGCACAAGGCCGTTTTGGGGTTTGCCGCGGCAAGC AACCGACAGCACATCAAGCATGAAGACTCACCAGCTACGACCCTGTCTGC TTCTGGCCGCCCTCGTGGCATTGAGCACGACCACAGGGATCTCTGCATTT GTCCTCCCATGCAGCAGCAAAAGTGGCAGCAGCCGTGCAGGCCTCCGCAT GGCTGCTTCATCGAACAACTACGATCGCCGCAGTCTTTTTGTGAAGAGTG CTGCTATGTCCTCTCTCTTGGCGCTCTCACTCTCGTCTGCTCGCCCTGCC GCGGCCTCGGTCGCCTTTGACCCCGACCGTTACGGCGACAAGGAGCTCAA GATTGCCACAGTAAACAAATTAAAGCAAAAACTCCGCAATGCCATCGCGG GGGACTTGACGCTGGCCGTGCCTTTCGTGCGGTTGGCGATTAATGACGCC ATTGGCTACGATGCCGCCACGGACGGCGGAGGTCCCGACGGTTCCATCAC TTTCGAAATGGACCGTGCGCAGAACGAAGGTCTCAAGCCCGCCCTCGCCG TCCTTACCAAGGTCAAAGGGGAAATGCAGAGTACCAATGAAGTGACCTTC GGCGATATCTGTGCCTTTGCCGGTGCTGTCGCGATTGAGAGCACGGGCGG CCCCCGGATCCCTGTGCAGTTGGGGAGAACCGACTCGGGCCAACCCAACG TGAACAATGTCGGCGATCCGGGCTATTCCTGGGCCTCCATGACGGGAGAA GGGCTCAAAAACACGTTCACCAAGGCCGGTTTGGGACCCCGGGAGGCTAC CCTCCTCTACGGTGCCGTCGGAGCAGTCCATCTGGCCACCAAGGACGCAG GGCAATCCGCTGGGGAGGTGGACGCGGACATCGACGACGACGGTGAGATC GAAGCGTTCATCCCCACGACGTTCGGCAAACAAAGTGATATCTACGGCGC GCAATTGGGCACCAAAAAGTTCGATGCCTCGTACCTTGCCCTGGTTGGAA AGGGGCAAGCGGTGGGCTTGGGTACGATTGACAAGGTGTTGGCGACCGAT CCACAGTTGAAGACATTTGTGACGAAGTACGCTGGGAACAACAATGCCTT TTTGAAGGATCTGAATGAGTGTTATCTAAAACTGACGACGTTGGGTTACA AGGGTACGAAGCGAAATGATTAAGACTGGATGGCGGTGGAAAAGATCGTC TCCAGCAGTGCAGGAGAAGGACGGACAAAAGCAATTAGTTTTACTTGTTT CACATTTATCTCAGAGATTATCTTTGACAAAACAGAGAGGGATGTCCCTG TGTGTCTTCCGCGACACAAAACAGCGAAACAACATACTTTAAAAAAAAAT CCTATGCACATGCCA back to topprotein sequence of jgi.p|Nanoce1779_2|581817 >mRNA_3342-protein ID=mRNA_3342-protein|Name=jgi.p|Nanoce1779_2|581817|organism=Nannochloropsis oceanica|type=polypeptide|length=368bp MKTHQLRPCLLLAALVALSTTTGISAFVLPCSSKSGSSRAGLRMAASSNN YDRRSLFVKSAAMSSLLALSLSSARPAAASVAFDPDRYGDKELKIATVNK LKQKLRNAIAGDLTLAVPFVRLAINDAIGYDAATDGGGPDGSITFEMDRA QNEGLKPALAVLTKVKGEMQSTNEVTFGDICAFAGAVAIESTGGPRIPVQ LGRTDSGQPNVNNVGDPGYSWASMTGEGLKNTFTKAGLGPREATLLYGAV GAVHLATKDAGQSAGEVDADIDDDGEIEAFIPTTFGKQSDIYGAQLGTKK FDASYLALVGKGQAVGLGTIDKVLATDPQLKTFVTKYAGNNNAFLKDLNE CYLKLTTLGYKGTKRND* back to topmRNA from alignment at scaffold_6:64156..66286+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3342 ID=mRNA_3342|Name=jgi.p|Nanoce1779_2|581817|organism=Nannochloropsis oceanica|type=mRNA|length=2131bp|location=Sequence derived from alignment at scaffold_6:64156..66286+ (Nannochloropsis oceanica) CAGGACCGCCATTCGTGCACAAGGCCGTTTTGGGGTTTGCCGCGGCAAGC
AACCGACAGCACATCAAGCATGAAGACTCACCAGCTACGACCCTGTCTGC
TTCTGGCCGCCCTCGTGGCATTGAGCACGACCACAGGGATCTCTGCATTT
GTCCTCCCATGCAGCAGCAAAAGTGGCAGCAGCCGTGCAGGTAGGTCGAG
ATTGGGGAAGTCGAAGGGGGGGTCATATGCGAATAACACGTCTTCATTCC
TCCCCCTCCCCTGTCATGTGCCCTCCCCCACCCTCCCCATATGTCTCTTT
CCAAAGCAGGCCTCCGCATGGCTGCTTCATCGAACAACTACGATCGCCGC
AGTCTTTTTGTGAAGAGTGCTGCTATGTCCTCTCTCTTGGCGCTCTCACT
CTCGTCTGCTCGGTACGTGCGATGATTCTCTTTGTGAGGGGACCTTGCGA
ACTAGGCCTCATTCCGTCCCCTCCTCATTCGCCTCAGTAATGATCACTTG
GCCTGCATGCGCTTGCAAATGTGTGTTTGGTTTAAGCAAGAGAAGGCACT
GGGGTCTGGCGTATGTGGCTTTGATTATCTCTTTCCTCTCATCCTCCCTT
CCTTCCTCCCTCTCTCCTTTCTTCCACTAGCCCTGCCGCGGCCTCGGTCG
CCTTTGACCCCGACCGTTACGGCGACAAGGAGCTCAAGATTGCCACAGTA
AACAAATTAAAGCAAAAACTCCGCAATGCCATCGCGGGGGACTTGACGCT
GGCCGTGCCTTTCGTGCGGTTGGCGATTAATGACGGTAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGGGAGGGAAAAAACAAACAAAGGAAGTGAGTG
AAAGATAGGGGAATGAAAGATACGACGGAATAGTCTTGGCAATTTCTGCC
CCTCATTTGCCCCTTTTTTTTACAGCCATTGGCTACGATGCCGCCACGGA
CGGCGGAGGTCCCGACGGTTCCATCACTTTCGAAATGGACCGTGCGCAGA
ACGAAGGTCTCAAGCCCGCCCTCGCCGTCCTTACCAAGGTCAAAGGGGAA
ATGCAGAGTACCAATGAAGTGACCTTCGGCGATATCTGTGCCTTTGCCGG
TGCTGTCGCGATTGAGAGCACGGGCGGCCCCCGGATCCCTGTGCAGTTGG
GGAGGTAAGGAGGGAGGAAGAAGCAGGGATTATGCATGAAAAGCTAGTGG
GAAATGTAATCCCTGGATACTCATTATCACACATCCTGGCGGTTCGTATT
CAATTGAATTTATCCTCCCTCCCCTCCGCCCTCCCTTCCCCACAGAACCG
ACTCGGGCCAACCCAACGTGAACAATGTCGGCGATCCGGGCTATTCCTGG
GCCTCCATGACGGGAGAAGGGCTCAAAAACACGTTCACCAAGGCCGGTTT
GGGACCCCGGTAGGTGGTAGGACGTATAATCTTGTACTCATTATGTGCGG
CACCTTTCTTTTTATGTGAACTTTGAATGCTGCGCTTGTCTGACTCATCG
ATGACTTCTCTTTTCTTCTCTTTTCGCCCCTGAATTTCTTGACTACTTGT
TTTGTAGGGAGGCTACCCTCCTCTACGGTGCCGTCGGAGCAGTCCATCTG
GCCACCAAGGACGCAGGGCAATCCGCTGGGGAGGTGGACGCGGACATCGA
CGACGACGGTGAGATCGAAGCGTTCATCCCCACGACGTTCGGCAAACAAA
GTGATATCTACGGCGCGCAATTGGGCACCAAAAAGTTCGATGCCTCGTAC
CTTGCCCTGGTTGGAAAGGGGCAAGCGGTGGGCTTGGGTACGATTGACAA
GGTGTTGGCGACCGATCCACAGTTGAAGACATTTGTGACGAAGTACGCTG
GGAACAACAATGCCTTTTTGAAGGATCTGAATGAGTGTTATCTAAAACTG
ACGACGTTGGGTTACAAGGGTACGAAGCGAAATGATTAAGACTGGATGGC
GGTGGAAAAGATCGTCTCCAGCAGTGCAGGAGAAGGACGGACAAAAGCAA
TTAGTTTTACTTGTTTCACATTTATCTCAGAGATTATCTTTGACAAAACA
GAGAGGGATGTCCCTGTGTGTCTTCCGCGACACAAAACAGCGAAACAACA
TACTTTAAAAAAAAATCCTATGCACATGCCA back to topCoding sequence (CDS) from alignment at scaffold_6:64156..66286+ >mRNA_3342 ID=mRNA_3342|Name=jgi.p|Nanoce1779_2|581817|organism=Nannochloropsis oceanica|type=CDS|length=6624bp|location=Sequence derived from alignment at scaffold_6:64156..66286+ (Nannochloropsis oceanica) ATGAAGACTCACCAGCTACGACCCTGTCTGCTTCTGGCCGCCCTCGTGGC ATTGAGCACGACCACAGGGATCTCTGCATTTGTCCTCCCATGCAGCAGCA AAAGTGGCAGCAGCCGTGCAGGCCTCCGCATGGCTGCTTCATCGAACAAC TACGATCGCCGCAGTCTTTTTGTGAAGAGTGCTGCTATGTCCTCTCTCTT GGCGCTCTCACTCTCGTCTGCTCGCCCTGCCGCGGCCTCGGTCGCCTTTG ACCCCGACCGTTACGGCGACAAGGAGCTCAAGATTGCCACAGTAAACAAA TTAAAGCAAAAACTCCGCAATGCCATCGCGGGGGACTTGACGCTGGCCGT GCCTTTCGTGCGGTTGGCGATTAATGACGCCATTGGCTACGATGCCGCCA CGGACGGCGGAGGTCCCGACGGTTCCATCACTTTCGAAATGGACCGTGCG CAGAACGAAGGTCTCAAGCCCGCCCTCGCCGTCCTTACCAAGGTCAAAGG GGAAATGCAGAGTACCAATGAAGTGACCTTCGGCGATATCTGTGCCTTTG CCGGTGCTGTCGCGATTGAGAGCACGGGCGGCCCCCGGATCCCTGTGCAG TTGGGGAGAACCGACTCGGGCCAACCCAACGTGAACAATGTCGGCGATCC GGGCTATTCCTGGGCCTCCATGACGGGAGAAGGGCTCAAAAACACGTTCA CCAAGGCCGGTTTGGGACCCCGGGAGGCTACCCTCCTCTACGGTGCCGTC GGAGCAGTCCATCTGGCCACCAAGGACGCAGGGCAATCCGCTGGGGAGGT GGACGCGGACATCGACGACGACGGTGAGATCGAAGCGTTCATCCCCACGA CGTTCGGCAAACAAAGTGATATCTACGGCGCGCAATTGGGCACCAAAAAG TTCGATGCCTCGTACCTTGCCCTGGTTGGAAAGGGGCAAGCGGTGGGCTT GGGTACGATTGACAAGGTGTTGGCGACCGATCCACAGTTGAAGACATTTG TGACGAAGTACGCTGGGAACAACAATGCCTTTTTGAAGGATCTGAATGAG TGTTATCTAAAACTGACGACGTTGGGTTACAAGGGTACGAAGCGAAATGA TTAAATGAAGACTCACCAGCTACGACCCTGTCTGCTTCTGGCCGCCCTCG TGGCATTGAGCACGACCACAGGGATCTCTGCATTTGTCCTCCCATGCAGC AGCAAAAGTGGCAGCAGCCGTGCAGGCCTCCGCATGGCTGCTTCATCGAA CAACTACGATCGCCGCAGTCTTTTTGTGAAGAGTGCTGCTATGTCCTCTC TCTTGGCGCTCTCACTCTCGTCTGCTCGCCCTGCCGCGGCCTCGGTCGCC TTTGACCCCGACCGTTACGGCGACAAGGAGCTCAAGATTGCCACAGTAAA CAAATTAAAGCAAAAACTCCGCAATGCCATCGCGGGGGACTTGACGCTGG CCGTGCCTTTCGTGCGGTTGGCGATTAATGACGCCATTGGCTACGATGCC GCCACGGACGGCGGAGGTCCCGACGGTTCCATCACTTTCGAAATGGACCG TGCGCAGAACGAAGGTCTCAAGCCCGCCCTCGCCGTCCTTACCAAGGTCA AAGGGGAAATGCAGAGTACCAATGAAGTGACCTTCGGCGATATCTGTGCC TTTGCCGGTGCTGTCGCGATTGAGAGCACGGGCGGCCCCCGGATCCCTGT GCAGTTGGGGAGAACCGACTCGGGCCAACCCAACGTGAACAATGTCGGCG ATCCGGGCTATTCCTGGGCCTCCATGACGGGAGAAGGGCTCAAAAACACG TTCACCAAGGCCGGTTTGGGACCCCGGGAGGCTACCCTCCTCTACGGTGC CGTCGGAGCAGTCCATCTGGCCACCAAGGACGCAGGGCAATCCGCTGGGG AGGTGGACGCGGACATCGACGACGACGGTGAGATCGAAGCGTTCATCCCC ACGACGTTCGGCAAACAAAGTGATATCTACGGCGCGCAATTGGGCACCAA AAAGTTCGATGCCTCGTACCTTGCCCTGGTTGGAAAGGGGCAAGCGGTGG GCTTGGGTACGATTGACAAGGTGTTGGCGACCGATCCACAGTTGAAGACA TTTGTGACGAAGTACGCTGGGAACAACAATGCCTTTTTGAAGGATCTGAA TGAGTGTTATCTAAAACTGACGACGTTGGGTTACAAGGGTACGAAGCGAA ATGATTAAATGAAGACTCACCAGCTACGACCCTGTCTGCTTCTGGCCGCC CTCGTGGCATTGAGCACGACCACAGGGATCTCTGCATTTGTCCTCCCATG CAGCAGCAAAAGTGGCAGCAGCCGTGCAGGCCTCCGCATGGCTGCTTCAT CGAACAACTACGATCGCCGCAGTCTTTTTGTGAAGAGTGCTGCTATGTCC TCTCTCTTGGCGCTCTCACTCTCGTCTGCTCGCCCTGCCGCGGCCTCGGT CGCCTTTGACCCCGACCGTTACGGCGACAAGGAGCTCAAGATTGCCACAG TAAACAAATTAAAGCAAAAACTCCGCAATGCCATCGCGGGGGACTTGACG CTGGCCGTGCCTTTCGTGCGGTTGGCGATTAATGACGCCATTGGCTACGA TGCCGCCACGGACGGCGGAGGTCCCGACGGTTCCATCACTTTCGAAATGG ACCGTGCGCAGAACGAAGGTCTCAAGCCCGCCCTCGCCGTCCTTACCAAG GTCAAAGGGGAAATGCAGAGTACCAATGAAGTGACCTTCGGCGATATCTG TGCCTTTGCCGGTGCTGTCGCGATTGAGAGCACGGGCGGCCCCCGGATCC CTGTGCAGTTGGGGAGAACCGACTCGGGCCAACCCAACGTGAACAATGTC GGCGATCCGGGCTATTCCTGGGCCTCCATGACGGGAGAAGGGCTCAAAAA CACGTTCACCAAGGCCGGTTTGGGACCCCGGGAGGCTACCCTCCTCTACG GTGCCGTCGGAGCAGTCCATCTGGCCACCAAGGACGCAGGGCAATCCGCT GGGGAGGTGGACGCGGACATCGACGACGACGGTGAGATCGAAGCGTTCAT CCCCACGACGTTCGGCAAACAAAGTGATATCTACGGCGCGCAATTGGGCA CCAAAAAGTTCGATGCCTCGTACCTTGCCCTGGTTGGAAAGGGGCAAGCG GTGGGCTTGGGTACGATTGACAAGGTGTTGGCGACCGATCCACAGTTGAA GACATTTGTGACGAAGTACGCTGGGAACAACAATGCCTTTTTGAAGGATC TGAATGAGTGTTATCTAAAACTGACGACGTTGGGTTACAAGGGTACGAAG CGAAATGATTAAATGAAGACTCACCAGCTACGACCCTGTCTGCTTCTGGC CGCCCTCGTGGCATTGAGCACGACCACAGGGATCTCTGCATTTGTCCTCC CATGCAGCAGCAAAAGTGGCAGCAGCCGTGCAGGCCTCCGCATGGCTGCT TCATCGAACAACTACGATCGCCGCAGTCTTTTTGTGAAGAGTGCTGCTAT GTCCTCTCTCTTGGCGCTCTCACTCTCGTCTGCTCGCCCTGCCGCGGCCT CGGTCGCCTTTGACCCCGACCGTTACGGCGACAAGGAGCTCAAGATTGCC ACAGTAAACAAATTAAAGCAAAAACTCCGCAATGCCATCGCGGGGGACTT GACGCTGGCCGTGCCTTTCGTGCGGTTGGCGATTAATGACGCCATTGGCT ACGATGCCGCCACGGACGGCGGAGGTCCCGACGGTTCCATCACTTTCGAA ATGGACCGTGCGCAGAACGAAGGTCTCAAGCCCGCCCTCGCCGTCCTTAC CAAGGTCAAAGGGGAAATGCAGAGTACCAATGAAGTGACCTTCGGCGATA TCTGTGCCTTTGCCGGTGCTGTCGCGATTGAGAGCACGGGCGGCCCCCGG ATCCCTGTGCAGTTGGGGAGAACCGACTCGGGCCAACCCAACGTGAACAA TGTCGGCGATCCGGGCTATTCCTGGGCCTCCATGACGGGAGAAGGGCTCA AAAACACGTTCACCAAGGCCGGTTTGGGACCCCGGGAGGCTACCCTCCTC TACGGTGCCGTCGGAGCAGTCCATCTGGCCACCAAGGACGCAGGGCAATC CGCTGGGGAGGTGGACGCGGACATCGACGACGACGGTGAGATCGAAGCGT TCATCCCCACGACGTTCGGCAAACAAAGTGATATCTACGGCGCGCAATTG GGCACCAAAAAGTTCGATGCCTCGTACCTTGCCCTGGTTGGAAAGGGGCA AGCGGTGGGCTTGGGTACGATTGACAAGGTGTTGGCGACCGATCCACAGT TGAAGACATTTGTGACGAAGTACGCTGGGAACAACAATGCCTTTTTGAAG GATCTGAATGAGTGTTATCTAAAACTGACGACGTTGGGTTACAAGGGTAC GAAGCGAAATGATTAAATGAAGACTCACCAGCTACGACCCTGTCTGCTTC TGGCCGCCCTCGTGGCATTGAGCACGACCACAGGGATCTCTGCATTTGTC CTCCCATGCAGCAGCAAAAGTGGCAGCAGCCGTGCAGGCCTCCGCATGGC TGCTTCATCGAACAACTACGATCGCCGCAGTCTTTTTGTGAAGAGTGCTG CTATGTCCTCTCTCTTGGCGCTCTCACTCTCGTCTGCTCGCCCTGCCGCG GCCTCGGTCGCCTTTGACCCCGACCGTTACGGCGACAAGGAGCTCAAGAT TGCCACAGTAAACAAATTAAAGCAAAAACTCCGCAATGCCATCGCGGGGG ACTTGACGCTGGCCGTGCCTTTCGTGCGGTTGGCGATTAATGACGCCATT GGCTACGATGCCGCCACGGACGGCGGAGGTCCCGACGGTTCCATCACTTT CGAAATGGACCGTGCGCAGAACGAAGGTCTCAAGCCCGCCCTCGCCGTCC TTACCAAGGTCAAAGGGGAAATGCAGAGTACCAATGAAGTGACCTTCGGC GATATCTGTGCCTTTGCCGGTGCTGTCGCGATTGAGAGCACGGGCGGCCC CCGGATCCCTGTGCAGTTGGGGAGAACCGACTCGGGCCAACCCAACGTGA ACAATGTCGGCGATCCGGGCTATTCCTGGGCCTCCATGACGGGAGAAGGG CTCAAAAACACGTTCACCAAGGCCGGTTTGGGACCCCGGGAGGCTACCCT CCTCTACGGTGCCGTCGGAGCAGTCCATCTGGCCACCAAGGACGCAGGGC AATCCGCTGGGGAGGTGGACGCGGACATCGACGACGACGGTGAGATCGAA GCGTTCATCCCCACGACGTTCGGCAAACAAAGTGATATCTACGGCGCGCA ATTGGGCACCAAAAAGTTCGATGCCTCGTACCTTGCCCTGGTTGGAAAGG GGCAAGCGGTGGGCTTGGGTACGATTGACAAGGTGTTGGCGACCGATCCA CAGTTGAAGACATTTGTGACGAAGTACGCTGGGAACAACAATGCCTTTTT GAAGGATCTGAATGAGTGTTATCTAAAACTGACGACGTTGGGTTACAAGG GTACGAAGCGAAATGATTAAATGAAGACTCACCAGCTACGACCCTGTCTG CTTCTGGCCGCCCTCGTGGCATTGAGCACGACCACAGGGATCTCTGCATT TGTCCTCCCATGCAGCAGCAAAAGTGGCAGCAGCCGTGCAGGCCTCCGCA TGGCTGCTTCATCGAACAACTACGATCGCCGCAGTCTTTTTGTGAAGAGT GCTGCTATGTCCTCTCTCTTGGCGCTCTCACTCTCGTCTGCTCGCCCTGC CGCGGCCTCGGTCGCCTTTGACCCCGACCGTTACGGCGACAAGGAGCTCA AGATTGCCACAGTAAACAAATTAAAGCAAAAACTCCGCAATGCCATCGCG GGGGACTTGACGCTGGCCGTGCCTTTCGTGCGGTTGGCGATTAATGACGC CATTGGCTACGATGCCGCCACGGACGGCGGAGGTCCCGACGGTTCCATCA CTTTCGAAATGGACCGTGCGCAGAACGAAGGTCTCAAGCCCGCCCTCGCC GTCCTTACCAAGGTCAAAGGGGAAATGCAGAGTACCAATGAAGTGACCTT CGGCGATATCTGTGCCTTTGCCGGTGCTGTCGCGATTGAGAGCACGGGCG GCCCCCGGATCCCTGTGCAGTTGGGGAGAACCGACTCGGGCCAACCCAAC GTGAACAATGTCGGCGATCCGGGCTATTCCTGGGCCTCCATGACGGGAGA AGGGCTCAAAAACACGTTCACCAAGGCCGGTTTGGGACCCCGGGAGGCTA CCCTCCTCTACGGTGCCGTCGGAGCAGTCCATCTGGCCACCAAGGACGCA GGGCAATCCGCTGGGGAGGTGGACGCGGACATCGACGACGACGGTGAGAT CGAAGCGTTCATCCCCACGACGTTCGGCAAACAAAGTGATATCTACGGCG CGCAATTGGGCACCAAAAAGTTCGATGCCTCGTACCTTGCCCTGGTTGGA AAGGGGCAAGCGGTGGGCTTGGGTACGATTGACAAGGTGTTGGCGACCGA TCCACAGTTGAAGACATTTGTGACGAAGTACGCTGGGAACAACAATGCCT TTTTGAAGGATCTGAATGAGTGTTATCTAAAACTGACGACGTTGGGTTAC AAGGGTACGAAGCGAAATGATTAA back to top
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