|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 577107 |
| Track | FilteredModels2 |
| ProteinId | 577021 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:826126..828247 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_334 ID=mRNA_334|Name=jgi.p|Nanoce1779_2|577021|organism=Nannochloropsis oceanica|type=mRNA|length=1480bp
AAACTATAGGCCTCATGGAGCCATTAGGACTTTCGGAGTCATTTGAGGAA
GGGACAGGGGTTGTGACCGAATCCATGGAGGATTTGCCGGAGGGGGAAGA
GCAAGAGAATCAGGCTACGACATTGCCCACTCTCTTGAAGCCGCAGGAGA
ACGGGGATGCTACTGATGCAGCCCAGGACCCGCATAATACCACCCTTGAG
CCAGCAGTAGTGCCTGCGACGAATATAACCGAACACAATGAGCCGGCTCC
AGGTGCCAGCGCTTCGCGAGCAGAGCATGACAGGAGTCCCATCCCTACAG
CTGGTACCACCACCACTCCCCACACCCCTGCTACTCATACGGGCAAGCCA
CGCCCCAATCTCCAAGGCACATTGATTGGACTTTTCGTCGCCATAGATCC
TGTCACTCAAAGGGGGAAAGTGAACGTCAAGCGTGAGCTTGAGAACATGG
GGATCTACCAACGCGACTTGGCCCCATGGGAAGAAGTTCAGCTTTCGCTC
GAGCAGGCCTTTTACCTTGTCGCAGATTTGAAGCGTCTTGAGGTGTATTT
GCCCTCACCACCACCTCCGTTTCAGCAGCAGGAGGAAGAGGAGAAGGAGG
TGGAATTGGAGGAAGAAGGGCAGGAAGGGCACGTAACGGATCTGGCGGAC
GGAAAGGCAGATGAGCAACAGCAGCAGCAACAACAACAACAGCAGAAAAT
TGAGGAGATGGCGGCGGAAAGTGAGCCACTGGATGGTGCAAAACCAAGGG
TCTTGAGTGTGATGGAGTGCTGGAAAGCGTTCCGCACTGCCAGCCCCACC
TTCGTCAAAAGCGTGGGCAGTTACCGCTACTTCCGAGAACAAGGCTTTGT
CGTGCACGGTGGTCTCAATCTTGGCTTGGATTTAATGCTATATCGTGGCA
CCCCTCAACGGTATCACGCCGAATTCGGAGTCCTCCTCCGCTATCCTCCC
TCAGCCCCTCCTCCCACGTCTTCTCTCACCGAGAGGGGAGGAGAGGGAGG
AAAAGGAGAGGAGAGGGGGATGGATGAGAATGGTTTGAGCTGGCGGGATC
TTCATTTGCTGTATCGATTGATTGGGGTAAGTGGTTGAAACAACGTGAAG
GTGGAGTATCCTCCTTGTCGCCCTGCTGTTTTGTGCGCTCCTTTTGGCGC
ACACTTTTATTATTTGCTGATGTGATGTACTCATTTTCCCTCCTTCCATC
TTTCCCTCCCTCTCTTTCCTACAGGAGGTGCGCAAGACGCTCATTCTCGG
TCACGTCCGCCTGGGGAATCTTGAAGAGAAGCCGGAGGAAAAAGCTGCAG
TCGATAGGGAGGGAGGGGAAGAAAGTGATGGAGAAATGCGACGAGAGATG
CAGGAGTGGTACCGTGGGCTGAGTGTTTATGAAGTGGCCGTCACACCATG
GAGGGCAGGGACGCCGTTAGCCCGTCTCAAGATGAGCAAGCAAAAGGGGA
ACGCTGCTCAGGTTAAGAGGGGGGGAGGAG back to topprotein sequence of jgi.p|Nanoce1779_2|577021 >mRNA_334-protein ID=mRNA_334-protein|Name=jgi.p|Nanoce1779_2|577021|organism=Nannochloropsis oceanica|type=polypeptide|length=358bp
MEPLGLSESFEEGTGVVTESMEDLPEGEEQENQATTLPTLLKPQENGDAT
DAAQDPHNTTLEPAVVPATNITEHNEPAPGASASRAEHDRSPIPTAGTTT
TPHTPATHTGKPRPNLQGTLIGLFVAIDPVTQRGKVNVKRELENMGIYQR
DLAPWEEVQLSLEQAFYLVADLKRLEVYLPSPPPPFQQQEEEEKEVELEE
EGQEGHVTDLADGKADEQQQQQQQQQQKIEEMAAESEPLDGAKPRVLSVM
ECWKAFRTASPTFVKSVGSYRYFREQGFVVHGGLNLGLDLMLYRGTPQRY
HAEFGVLLRYPPSAPPPTSSLTERGGEGGKGEERGMDENGLSWRDLHLLY
RLIGVSG* back to topmRNA from alignment at scaffold_3:826126..828247- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_334 ID=mRNA_334|Name=jgi.p|Nanoce1779_2|577021|organism=Nannochloropsis oceanica|type=mRNA|length=2122bp|location=Sequence derived from alignment at scaffold_3:826126..828247- (Nannochloropsis oceanica)
AAACTATAGGCCTCATGGAGCCATTAGGACTTTCGGAGTCATTTGAGGAA
GGGACAGGGGTTGTGACCGAATCCATGGAGGATTTGCCGGAGGGGGAAGA
GCAAGAGAATCAGGCTACGACATTGCCCACTCTCTTGAAGCCGCAGGAGA
ACGGGGATGCTACTGATGCAGCCCAGGACCCGCATAATACCACCCTTGAG
CCAGCAGTAGTGCCTGCGACGAATATAACCGAACACAATGAGCCGGCTCC
AGGTGCCAGCGCTTCGCGAGCAGAGCATGACAGGAGTCCCATCCCTACAG
CTGGTACCACCACCACTCCCCACACCCCTGCTACTCATACGGGCAAGCCA
CGCCCCAATCTCCAAGGCACATTGATTGGACTTTTCGTCGCCATAGATCC
TGTCACTCAAAGGTACGTGTATGGAAGAGCAGGGGATAGGAGGGATGCAT
ATTAGACCACAGACATACGTATATATAGATACAATTTATCTTCAACCCCC
CTCCATTTTCGTCCTTCTACGCACGTTCGACAGGGGGAAAGTGAACGTCA
AGCGTGAGCTTGAGAACATGGGGATCTACCAACGCGTACGTATTGTTGTC
TCATTATCGATCGTTGCTCTCAAGAATCGACCACACCAACCTGACCGGTA
ATCCATCCCTACCTTTCCTACTTTACTCACCGCTTCCTCCCTCATATTTA
TTTTCATAAGGACTTGGCCCCATGGGAAGAAGTTCAGCTTTCGCTCGAGC
AGGCCTTTTACCTTGTCGCAGATTTGAAGCGTCTTGAGGTGTATTTGCCC
TCACCACCACCTCCGTTTCAGCAGCAGGAGGAAGAGGAGAAGGAGGTGGA
ATTGGAGGAAGAAGGGCAGGAAGGGCACGTAACGGATCTGGCGGACGGAA
AGGCAGATGAGCAACAGCAGCAGCAACAACAACAACAGCAGAAAATTGAG
GAGATGGCGGCGGAAAGTGAGCCACTGGATGGTGCAAAACCAAGGGTCTT
GAGTGTGATGGAGTGCTGGAAAGCGTACGTAATATTTTTTAATGTCCGAC
AAGATCCCAAGCTTCTCTCCTCAACTGCATTTCTCTCTCTCTTTTGTTTT
CTTCTCCTCTTTGAAGTATCTTACTAAACACATAGCCATTCTCTAATTTC
CTCCAATTTCCTCTAACCTATATCCCTCGCCCATTTTCTGATGCAGGTTC
CGCACTGCCAGCCCCACCTTCGTCAAAAGCGTGGGCAGTTACCGCTACTT
CCGAGAACAAGGGTAAGTCCGGCTGGCTGAAGAAAAGATGACGTCCACAT
GAGTCAAGATGCATGCCATAATTAGCGTGCATTATTAATCGCTTGTTGAA
TTTCCCCCCCAATTTGAGGGGATGGTATTGAAAGCGCTCTTTACTATCCG
CTCTTGCCGCCCGCTTTCAGCATTCTTATTCATTTATTCGCTCCCTGTCT
CTCTTCCTCCCTGCCGCCCCGACTCTTTCTCTCTAGCTTTGTCGTGCACG
GTGGTCTCAATCTTGGCTTGGATTTAATGCTATATCGTGGCACCCCTCAA
CGGTATCACGCCGAATTCGGAGTCCTCCTCCGCTATCCTCCCTCAGCCCC
TCCTCCCACGTCTTCTCTCACCGAGAGGGGAGGAGAGGGAGGAAAAGGAG
AGGAGAGGGGGATGGATGAGAATGGTTTGAGCTGGCGGGATCTTCATTTG
CTGTATCGATTGATTGGGGTAAGTGGTTGAAACAACGTGAAGGTGGAGTA
TCCTCCTTGTCGCCCTGCTGTTTTGTGCGCTCCTTTTGGCGCACACTTTT
ATTATTTGCTGATGTGATGTACTCATTTTCCCTCCTTCCATCTTTCCCTC
CCTCTCTTTCCTACAGGAGGTGCGCAAGACGCTCATTCTCGGTCACGTCC
GCCTGGGGAATCTTGAAGAGAAGCCGGAGGAAAAAGCTGCAGTCGATAGG
GAGGGAGGGGAAGAAAGTGATGGAGAAATGCGACGAGAGATGCAGGAGTG
GTACCGTGGGCTGAGTGTTTATGAAGTGGCCGTCACACCATGGAGGGCAG
GGACGCCGTTAGCCCGTCTCAAGATGAGCAAGCAAAAGGGGAACGCTGCT
CAGGTTAAGAGGGGGGGAGGAG back to topCoding sequence (CDS) from alignment at scaffold_3:826126..828247- >mRNA_334 ID=mRNA_334|Name=jgi.p|Nanoce1779_2|577021|organism=Nannochloropsis oceanica|type=CDS|length=5370bp|location=Sequence derived from alignment at scaffold_3:826126..828247- (Nannochloropsis oceanica)
CTTTGTCGTGCACGGTGGTCTCAATCTTGGCTTGGATTTAATGCTATATC
GTGGCACCCCTCAACGGTATCACGCCGAATTCGGAGTCCTCCTCCGCTAT
CCTCCCTCAGCCCCTCCTCCCACGTCTTCTCTCACCGAGAGGGGAGGAGA
GGGAGGAAAAGGAGAGGAGAGGGGGATGGATGAGAATGGTTTGAGCTGGC
GGGATCTTCATTTGCTGTATCGATTGATTGGGGTAAGTGGTTGAGTTCCG
CACTGCCAGCCCCACCTTCGTCAAAAGCGTGGGCAGTTACCGCTACTTCC
GAGAACAAGGGACTTGGCCCCATGGGAAGAAGTTCAGCTTTCGCTCGAGC
AGGCCTTTTACCTTGTCGCAGATTTGAAGCGTCTTGAGGTGTATTTGCCC
TCACCACCACCTCCGTTTCAGCAGCAGGAGGAAGAGGAGAAGGAGGTGGA
ATTGGAGGAAGAAGGGCAGGAAGGGCACGTAACGGATCTGGCGGACGGAA
AGGCAGATGAGCAACAGCAGCAGCAACAACAACAACAGCAGAAAATTGAG
GAGATGGCGGCGGAAAGTGAGCCACTGGATGGTGCAAAACCAAGGGTCTT
GAGTGTGATGGAGTGCTGGAAAGCGGGGAAAGTGAACGTCAAGCGTGAGC
TTGAGAACATGGGGATCTACCAACGCATGGAGCCATTAGGACTTTCGGAG
TCATTTGAGGAAGGGACAGGGGTTGTGACCGAATCCATGGAGGATTTGCC
GGAGGGGGAAGAGCAAGAGAATCAGGCTACGACATTGCCCACTCTCTTGA
AGCCGCAGGAGAACGGGGATGCTACTGATGCAGCCCAGGACCCGCATAAT
ACCACCCTTGAGCCAGCAGTAGTGCCTGCGACGAATATAACCGAACACAA
TGAGCCGGCTCCAGGTGCCAGCGCTTCGCGAGCAGAGCATGACAGGAGTC
CCATCCCTACAGCTGGTACCACCACCACTCCCCACACCCCTGCTACTCAT
ACGGGCAAGCCACGCCCCAATCTCCAAGGCACATTGATTGGACTTTTCGT
CGCCATAGATCCTGTCACTCAAAGCTTTGTCGTGCACGGTGGTCTCAATC
TTGGCTTGGATTTAATGCTATATCGTGGCACCCCTCAACGGTATCACGCC
GAATTCGGAGTCCTCCTCCGCTATCCTCCCTCAGCCCCTCCTCCCACGTC
TTCTCTCACCGAGAGGGGAGGAGAGGGAGGAAAAGGAGAGGAGAGGGGGA
TGGATGAGAATGGTTTGAGCTGGCGGGATCTTCATTTGCTGTATCGATTG
ATTGGGGTAAGTGGTTGAGTTCCGCACTGCCAGCCCCACCTTCGTCAAAA
GCGTGGGCAGTTACCGCTACTTCCGAGAACAAGGGACTTGGCCCCATGGG
AAGAAGTTCAGCTTTCGCTCGAGCAGGCCTTTTACCTTGTCGCAGATTTG
AAGCGTCTTGAGGTGTATTTGCCCTCACCACCACCTCCGTTTCAGCAGCA
GGAGGAAGAGGAGAAGGAGGTGGAATTGGAGGAAGAAGGGCAGGAAGGGC
ACGTAACGGATCTGGCGGACGGAAAGGCAGATGAGCAACAGCAGCAGCAA
CAACAACAACAGCAGAAAATTGAGGAGATGGCGGCGGAAAGTGAGCCACT
GGATGGTGCAAAACCAAGGGTCTTGAGTGTGATGGAGTGCTGGAAAGCGG
GGAAAGTGAACGTCAAGCGTGAGCTTGAGAACATGGGGATCTACCAACGC
ATGGAGCCATTAGGACTTTCGGAGTCATTTGAGGAAGGGACAGGGGTTGT
GACCGAATCCATGGAGGATTTGCCGGAGGGGGAAGAGCAAGAGAATCAGG
CTACGACATTGCCCACTCTCTTGAAGCCGCAGGAGAACGGGGATGCTACT
GATGCAGCCCAGGACCCGCATAATACCACCCTTGAGCCAGCAGTAGTGCC
TGCGACGAATATAACCGAACACAATGAGCCGGCTCCAGGTGCCAGCGCTT
CGCGAGCAGAGCATGACAGGAGTCCCATCCCTACAGCTGGTACCACCACC
ACTCCCCACACCCCTGCTACTCATACGGGCAAGCCACGCCCCAATCTCCA
AGGCACATTGATTGGACTTTTCGTCGCCATAGATCCTGTCACTCAAAGCT
TTGTCGTGCACGGTGGTCTCAATCTTGGCTTGGATTTAATGCTATATCGT
GGCACCCCTCAACGGTATCACGCCGAATTCGGAGTCCTCCTCCGCTATCC
TCCCTCAGCCCCTCCTCCCACGTCTTCTCTCACCGAGAGGGGAGGAGAGG
GAGGAAAAGGAGAGGAGAGGGGGATGGATGAGAATGGTTTGAGCTGGCGG
GATCTTCATTTGCTGTATCGATTGATTGGGGTAAGTGGTTGAGTTCCGCA
CTGCCAGCCCCACCTTCGTCAAAAGCGTGGGCAGTTACCGCTACTTCCGA
GAACAAGGGACTTGGCCCCATGGGAAGAAGTTCAGCTTTCGCTCGAGCAG
GCCTTTTACCTTGTCGCAGATTTGAAGCGTCTTGAGGTGTATTTGCCCTC
ACCACCACCTCCGTTTCAGCAGCAGGAGGAAGAGGAGAAGGAGGTGGAAT
TGGAGGAAGAAGGGCAGGAAGGGCACGTAACGGATCTGGCGGACGGAAAG
GCAGATGAGCAACAGCAGCAGCAACAACAACAACAGCAGAAAATTGAGGA
GATGGCGGCGGAAAGTGAGCCACTGGATGGTGCAAAACCAAGGGTCTTGA
GTGTGATGGAGTGCTGGAAAGCGGGGAAAGTGAACGTCAAGCGTGAGCTT
GAGAACATGGGGATCTACCAACGCATGGAGCCATTAGGACTTTCGGAGTC
ATTTGAGGAAGGGACAGGGGTTGTGACCGAATCCATGGAGGATTTGCCGG
AGGGGGAAGAGCAAGAGAATCAGGCTACGACATTGCCCACTCTCTTGAAG
CCGCAGGAGAACGGGGATGCTACTGATGCAGCCCAGGACCCGCATAATAC
CACCCTTGAGCCAGCAGTAGTGCCTGCGACGAATATAACCGAACACAATG
AGCCGGCTCCAGGTGCCAGCGCTTCGCGAGCAGAGCATGACAGGAGTCCC
ATCCCTACAGCTGGTACCACCACCACTCCCCACACCCCTGCTACTCATAC
GGGCAAGCCACGCCCCAATCTCCAAGGCACATTGATTGGACTTTTCGTCG
CCATAGATCCTGTCACTCAAAGCTTTGTCGTGCACGGTGGTCTCAATCTT
GGCTTGGATTTAATGCTATATCGTGGCACCCCTCAACGGTATCACGCCGA
ATTCGGAGTCCTCCTCCGCTATCCTCCCTCAGCCCCTCCTCCCACGTCTT
CTCTCACCGAGAGGGGAGGAGAGGGAGGAAAAGGAGAGGAGAGGGGGATG
GATGAGAATGGTTTGAGCTGGCGGGATCTTCATTTGCTGTATCGATTGAT
TGGGGTAAGTGGTTGAGTTCCGCACTGCCAGCCCCACCTTCGTCAAAAGC
GTGGGCAGTTACCGCTACTTCCGAGAACAAGGGACTTGGCCCCATGGGAA
GAAGTTCAGCTTTCGCTCGAGCAGGCCTTTTACCTTGTCGCAGATTTGAA
GCGTCTTGAGGTGTATTTGCCCTCACCACCACCTCCGTTTCAGCAGCAGG
AGGAAGAGGAGAAGGAGGTGGAATTGGAGGAAGAAGGGCAGGAAGGGCAC
GTAACGGATCTGGCGGACGGAAAGGCAGATGAGCAACAGCAGCAGCAACA
ACAACAACAGCAGAAAATTGAGGAGATGGCGGCGGAAAGTGAGCCACTGG
ATGGTGCAAAACCAAGGGTCTTGAGTGTGATGGAGTGCTGGAAAGCGGGG
AAAGTGAACGTCAAGCGTGAGCTTGAGAACATGGGGATCTACCAACGCAT
GGAGCCATTAGGACTTTCGGAGTCATTTGAGGAAGGGACAGGGGTTGTGA
CCGAATCCATGGAGGATTTGCCGGAGGGGGAAGAGCAAGAGAATCAGGCT
ACGACATTGCCCACTCTCTTGAAGCCGCAGGAGAACGGGGATGCTACTGA
TGCAGCCCAGGACCCGCATAATACCACCCTTGAGCCAGCAGTAGTGCCTG
CGACGAATATAACCGAACACAATGAGCCGGCTCCAGGTGCCAGCGCTTCG
CGAGCAGAGCATGACAGGAGTCCCATCCCTACAGCTGGTACCACCACCAC
TCCCCACACCCCTGCTACTCATACGGGCAAGCCACGCCCCAATCTCCAAG
GCACATTGATTGGACTTTTCGTCGCCATAGATCCTGTCACTCAAAGCTTT
GTCGTGCACGGTGGTCTCAATCTTGGCTTGGATTTAATGCTATATCGTGG
CACCCCTCAACGGTATCACGCCGAATTCGGAGTCCTCCTCCGCTATCCTC
CCTCAGCCCCTCCTCCCACGTCTTCTCTCACCGAGAGGGGAGGAGAGGGA
GGAAAAGGAGAGGAGAGGGGGATGGATGAGAATGGTTTGAGCTGGCGGGA
TCTTCATTTGCTGTATCGATTGATTGGGGTAAGTGGTTGAGTTCCGCACT
GCCAGCCCCACCTTCGTCAAAAGCGTGGGCAGTTACCGCTACTTCCGAGA
ACAAGGGACTTGGCCCCATGGGAAGAAGTTCAGCTTTCGCTCGAGCAGGC
CTTTTACCTTGTCGCAGATTTGAAGCGTCTTGAGGTGTATTTGCCCTCAC
CACCACCTCCGTTTCAGCAGCAGGAGGAAGAGGAGAAGGAGGTGGAATTG
GAGGAAGAAGGGCAGGAAGGGCACGTAACGGATCTGGCGGACGGAAAGGC
AGATGAGCAACAGCAGCAGCAACAACAACAACAGCAGAAAATTGAGGAGA
TGGCGGCGGAAAGTGAGCCACTGGATGGTGCAAAACCAAGGGTCTTGAGT
GTGATGGAGTGCTGGAAAGCGGGGAAAGTGAACGTCAAGCGTGAGCTTGA
GAACATGGGGATCTACCAACGCATGGAGCCATTAGGACTTTCGGAGTCAT
TTGAGGAAGGGACAGGGGTTGTGACCGAATCCATGGAGGATTTGCCGGAG
GGGGAAGAGCAAGAGAATCAGGCTACGACATTGCCCACTCTCTTGAAGCC
GCAGGAGAACGGGGATGCTACTGATGCAGCCCAGGACCCGCATAATACCA
CCCTTGAGCCAGCAGTAGTGCCTGCGACGAATATAACCGAACACAATGAG
CCGGCTCCAGGTGCCAGCGCTTCGCGAGCAGAGCATGACAGGAGTCCCAT
CCCTACAGCTGGTACCACCACCACTCCCCACACCCCTGCTACTCATACGG
GCAAGCCACGCCCCAATCTCCAAGGCACATTGATTGGACTTTTCGTCGCC
ATAGATCCTGTCACTCAAAG back to top
|