jgi.p|Nanoce1779_2|581798, mRNA_3337 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581798
Unique NamemRNA_3337
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length605
Alignment locationscaffold_6:43891..44495 +

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Properties
Property NameValue
TranscriptId581884
TrackFilteredModels2
ProteinId581798
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:43891..44495 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581798gene_3337Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581798mRNA_3337-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3337CDS_3337Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3337 ID=mRNA_3337|Name=jgi.p|Nanoce1779_2|581798|organism=Nannochloropsis oceanica|type=mRNA|length=605bp
AGGACGAGGACGAGGACGAGGACGGGGGGGAGGGGGAGCTTGACGAGGCG
TTGATGAATCTCCGTTTTCCCGCGCAGCACGAGACGGATTTTGTGGGTGC
CGTGTTTAAGCTGGGGCTGAAGTGCTCTTCGCCGAAGGTGTTGATGGACC
TGATGCCCATGACGGAGACTCTGACGACAGAGCACATTAAGAGCCACCTG
CAAAAATACCGGCTGCATGGAAATAGGAGCAAGGACGAGTTCGTGGAGGT
GAGTCGAGAGGGAAGAGAGGGGGCACGGGGAAAAGGCGTGTATGGCAGGG
TCGATACTTGGTGATGGATGAAGGTATGAAGAGGCGCCTGTAGAAGGATC
GTTTGCAGGGTGCCTGTGAGGGATGGGGGAGGGAGGGAGGGAGGGAGAGA
GGGAGGGAGGGAGGAGCGATTGGCACCTACGTCAACATCTACCTTGATCT
CACCCATGTCCTCGCCCCACCCTTCTTCTGTCTTGCCCAGTACTTTAACG
GTTACATGCGTGGACCGTTTGCAAGCTTCTGCGCCCGGCGCGAGTGGGAG
CACGAGCGCGGGTCCGAGGGAGCGACTGGGGGAGGGGTCGAAGGCATCCT
CCCTC
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protein sequence of jgi.p|Nanoce1779_2|581798

>mRNA_3337-protein ID=mRNA_3337-protein|Name=jgi.p|Nanoce1779_2|581798|organism=Nannochloropsis oceanica|type=polypeptide|length=87bp
MNLRFPAQHETDFVGAVFKLGLKCSSPKVLMDLMPMTETLTTEHIKSHLQ
KYRLHGNRSKDEFVEVSREGREGARGKGVYGRVDTW*
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mRNA from alignment at scaffold_6:43891..44495+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3337 ID=mRNA_3337|Name=jgi.p|Nanoce1779_2|581798|organism=Nannochloropsis oceanica|type=mRNA|length=605bp|location=Sequence derived from alignment at scaffold_6:43891..44495+ (Nannochloropsis oceanica)
AGGACGAGGACGAGGACGAGGACGGGGGGGAGGGGGAGCTTGACGAGGCG
TTGATGAATCTCCGTTTTCCCGCGCAGCACGAGACGGATTTTGTGGGTGC
CGTGTTTAAGCTGGGGCTGAAGTGCTCTTCGCCGAAGGTGTTGATGGACC
TGATGCCCATGACGGAGACTCTGACGACAGAGCACATTAAGAGCCACCTG
CAAAAATACCGGCTGCATGGAAATAGGAGCAAGGACGAGTTCGTGGAGGT
GAGTCGAGAGGGAAGAGAGGGGGCACGGGGAAAAGGCGTGTATGGCAGGG
TCGATACTTGGTGATGGATGAAGGTATGAAGAGGCGCCTGTAGAAGGATC
GTTTGCAGGGTGCCTGTGAGGGATGGGGGAGGGAGGGAGGGAGGGAGAGA
GGGAGGGAGGGAGGAGCGATTGGCACCTACGTCAACATCTACCTTGATCT
CACCCATGTCCTCGCCCCACCCTTCTTCTGTCTTGCCCAGTACTTTAACG
GTTACATGCGTGGACCGTTTGCAAGCTTCTGCGCCCGGCGCGAGTGGGAG
CACGAGCGCGGGTCCGAGGGAGCGACTGGGGGAGGGGTCGAAGGCATCCT
CCCTC
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Coding sequence (CDS) from alignment at scaffold_6:43891..44495+

>mRNA_3337 ID=mRNA_3337|Name=jgi.p|Nanoce1779_2|581798|organism=Nannochloropsis oceanica|type=CDS|length=261bp|location=Sequence derived from alignment at scaffold_6:43891..44495+ (Nannochloropsis oceanica)
ATGAATCTCCGTTTTCCCGCGCAGCACGAGACGGATTTTGTGGGTGCCGT
GTTTAAGCTGGGGCTGAAGTGCTCTTCGCCGAAGGTGTTGATGGACCTGA
TGCCCATGACGGAGACTCTGACGACAGAGCACATTAAGAGCCACCTGCAA
AAATACCGGCTGCATGGAAATAGGAGCAAGGACGAGTTCGTGGAGGTGAG
TCGAGAGGGAAGAGAGGGGGCACGGGGAAAAGGCGTGTATGGCAGGGTCG
ATACTTGGTGA
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Synonyms
Publications