jgi.p|Nanoce1779_2|357634, mRNA_3336 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|357634
Unique Name	mRNA_3336
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1343
Alignment location	scaffold_6:39863..41693 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	357720
Track	FilteredModels2
ProteinId	357634

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:39863..41693 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|357634	gene_3336	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|357634	mRNA_3336-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3336	CDS_3336	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:39863..41693+
coding sequence from alignment at scaffold_6:39863..41693+

mRNA sequence

>mRNA_3336 ID=mRNA_3336|Name=jgi.p|Nanoce1779_2|357634|organism=Nannochloropsis oceanica|type=mRNA|length=1343bp
CACGCTACAGACACATTCAAGTCAGCAGTGGTACCAGGACAAGACAAATT
TCATGGGCACTGGACGTGCCACCACGGGCAAAAAGCGTGGGGGCGGGGGT
GGCTCTGTGTCGGAGGCGGCGGCGTTGGCAAAGAGCAAGGCAGGACCGGA
GGGAGTCTTGACGGCCTTGTCCAGCATCAAGCCGGAGGAGCTGCAGCACG
TCATGGAGGAAATCGAGACGGAGTCATCAGACTCCTGATTCCTTCCCTCC
CCCGACGAACCAGATGTACTCCCGCGCCAAGCGCCTCCGTTTGGAAGCGG
AGGAGCACGCACTGTCCCTCCAGAATGCTTTTCATGTAGAGTTGATGAAG
TTGCCCAAGTCAGTGCGGGCCATGTCACTGCGGGAGTTCTCTGAGCAGTA
CGGCGAGGACATTCGCTCCGTGATGCGCCTGGCCGTGGAAGAAGAAGCCT
CTCGCGCCCTCTCCCAAAGCCACCACAAGCAGCAGCAACGGCAACAACAA
CAGCGGAGGAAAAAGGGTTTGACTGGCACAGTCGTAAAGGCTGCCCCGCC
CACAGCGGGGCGGACGAGTCGAAGCGGTGCAGGAGGGCGAGCAGCAGGAG
CAGCAGGAGCAGGAGCAGTATCACGGTCCTCGGAGGGAGGAGGAGGGGCC
GGTGGAGGAAGGATGTCGACGCGGAGCAGCAGCATCAGCAGCAGTAGCAA
CACGGCCAGGAATAGCAGCAACAGTATTCGCACGAGCGTCAACAGTGGGG
GGGGCTTGGTGATGACGGTCATGCAAACCCCTATGGGAGTCGGGGGGGGG
AGGGCGACGCGCTCCGGTCGAGGGCGGGTGCGAGGGATGGGAGGGGTGCA
CCAGACCCCCATGATGAAATTCGATCCCCGCCTGCCGACAACTCCGGGTA
TTCGGGCGCCGAGGTATGGAGAGAGCGTGCTGAGTGTGAATGGCTCGCCG
CTGCAGGTGCCACTGCCGGTGGACGCCGAAGCGATGGAAGATGAAGACAC
GGCCGCCTTCACGCGCGCGGCCCTTGGAGGAGGGCGAGAGGGTGAAGGAG
GAGGGAGTGGGTCACCGTCGTTGATGATTGAGCTGCCCAACGGCGGAGGA
GAGACTGTGGACATCTTCAAGGACCCCTCGGCTTTGGCGCACATGGACAG
CCAAATGAAGGCGGACGTGGCGAGTAAGATCGAGAGACTGCAGAGTGGGC
TTGCATATGTCTTGCAGCATATCGGGGGGGCGTTGCTTGGTGGAGGAGGA
GGAGGGGAGGGAGGCGGGAAGAGCAATTGAAGATGGGAGTGAAACAGAAC
AAGAGGGTCACAGAAGGCAAGCGCAAGGTCACAGACATGAGTG

protein sequence of jgi.p|Nanoce1779_2|357634

>mRNA_3336-protein ID=mRNA_3336-protein|Name=jgi.p|Nanoce1779_2|357634|organism=Nannochloropsis oceanica|type=polypeptide|length=339bp
MYSRAKRLRLEAEEHALSLQNAFHVELMKLPKSVRAMSLREFSEQYGEDI
RSVMRLAVEEEASRALSQSHHKQQQRQQQQRRKKGLTGTVVKAAPPTAGR
TSRSGAGGRAAGAAGAGAVSRSSEGGGGAGGGRMSTRSSSISSSSNTARN
SSNSIRTSVNSGGGLVMTVMQTPMGVGGGRATRSGRGRVRGMGGVHQTPM
MKFDPRLPTTPGIRAPRYGESVLSVNGSPLQVPLPVDAEAMEDEDTAAFT
RAALGGGREGEGGGSGSPSLMIELPNGGGETVDIFKDPSALAHMDSQMKA
DVASKIERLQSGLAYVLQHIGGALLGGGGGGEGGGKSN*

mRNA from alignment at scaffold_6:39863..41693+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3336 ID=mRNA_3336|Name=jgi.p|Nanoce1779_2|357634|organism=Nannochloropsis oceanica|type=mRNA|length=1831bp|location=Sequence derived from alignment at scaffold_6:39863..41693+ (Nannochloropsis oceanica)
CACGCTACAGACACATTCAAGTCAGCAGTGGTACCAGGACAAGACAAATT
TCATGGGCACTGGACGTGCCACCACGGGCAAAAAGCGTGGGGGCGGGGGT
GGCTCTGTGTCGGAGGCGGCGGCGTTGGCAAAGAGCAAGGCAGGACCGGA
GGGAGTCTTGACGGCCTTGTCCAGCATCAAGCCGGAGGAGCTGCAGCACG
TCATGGAGGAAATCGAGACGGAGGTGGGTTTTCAGGGAGATGAGAAAAGA
CTGCGGGATGGAACTGCGAACACCCATGACATGCTCTTTTTATAGTCATC
AGACTCCTGATTCCTTCCCTCCCCCGACGAACCAGATGTACTCCCGCGCC
AAGCGCCTCCGTTTGGAAGCGGAGGAGCACGCACTGTCCCTCCAGAATGC
TTTTCATGTAGAGTTGATGAAGTTGCCCAAGTCAGTGCGGGCCATGTCAC
TGCGGGAGTTCTCTGAGCAGTACGGCGAGGTGAGGGAAGGGAGGGAGAGA
GGGAGGGAAGGAGGGCAAGAAGAAAGCAGAGTGGGGGGAAGATCATCGAC
AGCGCGAATTCTTGCCATGAGGACGTCTCTTCATCCTCCCTTTTCTCCCT
CCCTCCCTCCCTATCTCAGGACATTCGCTCCGTGATGCGCCTGGCCGTGG
AAGAAGAAGCCTCTCGCGCCCTCTCCCAAAGCCACCACAAGCAGCAGCAA
CGGCAACAACAACAGCGGAGGAAAAAGGGTTTGACTGGCACAGTCGTAAA
GGCTGCCCCGCCCACAGCGGGGCGGACGAGTCGAAGCGGTGCAGGAGGGC
GAGCAGCAGGAGCAGCAGGAGCAGGAGCAGTATCACGGTCCTCGGAGGGA
GGAGGAGGGGCCGGTGGAGGAAGGATGTCGACGCGGAGCAGCAGCATCAG
CAGCAGTAGCAACACGGCCAGGAATAGCAGCAACAGTATTCGCACGAGCG
TCAACAGTGGGGGGGGCTTGGTGATGACGGTCATGCAAACCCCTATGGGA
GTCGGGGGGGGGAGGGCGACGCGCTCCGGTCGAGGGCGGGTGCGAGGGAT
GGGAGGGGTGCACCAGACCCCCATGATGAAATTCGATCCCCGCCTGCCGA
CAACTCCGGGTATTCGGGCGCCGAGGTATGGAGAGAGCGTGCTGAGTGTG
AATGGCTCGCCGCTGCAGGTGCCACTGCCGGTGGACGCCGAAGCGATGGA
AGGTAGGGAGGGAGGGAGGGAGCGCGGGAGGGAGGGAGGACGGGGCAGTG
GAAAAAAGCGAATTTGGAGATTGCCCCTTGACATTTTTTGTTCCTATCAT
CATCGCATACATATACAATCACATATCAACATTTTAAATTCACAACAACA
TTTAATTAAACGCATATATGCGCGACACAGATGAAGACACGGCCGCCTTC
ACGCGCGCGGCCCTTGGAGGAGGGCGAGAGGGTGAAGGAGGAGGGAGTGG
GTCACCGTCGTTGATGATTGAGCTGCCCAACGGCGGAGGAGAGAGTAAGT
ACGAAATTAGCTGGAATACGAATACAAAGGAACAACCATTCCACTTCAGC
AATCTGACACTCCCTCCCTCGCTCCCTCGCTCCCTCCCTCAGCTGTGGAC
ATCTTCAAGGACCCCTCGGCTTTGGCGCACATGGACAGCCAAATGAAGGC
GGACGTGGCGAGTAAGATCGAGAGACTGCAGAGTGGGCTTGCATATGTCT
TGCAGCATATCGGGGGGGCGTTGCTTGGTGGAGGAGGAGGAGGGGAGGGA
GGCGGGAAGAGCAATTGAAGATGGGAGTGAAACAGAACAAGAGGGTCACA
GAAGGCAAGCGCAAGGTCACAGACATGAGTG

Coding sequence (CDS) from alignment at scaffold_6:39863..41693+

>mRNA_3336 ID=mRNA_3336|Name=jgi.p|Nanoce1779_2|357634|organism=Nannochloropsis oceanica|type=CDS|length=4068bp|location=Sequence derived from alignment at scaffold_6:39863..41693+ (Nannochloropsis oceanica)
ATGTACTCCCGCGCCAAGCGCCTCCGTTTGGAAGCGGAGGAGCACGCACT
GTCCCTCCAGAATGCTTTTCATGTAGAGTTGATGAAGTTGCCCAAGTCAG
TGCGGGCCATGTCACTGCGGGAGTTCTCTGAGCAGTACGGCGAGGACATT
CGCTCCGTGATGCGCCTGGCCGTGGAAGAAGAAGCCTCTCGCGCCCTCTC
CCAAAGCCACCACAAGCAGCAGCAACGGCAACAACAACAGCGGAGGAAAA
AGGGTTTGACTGGCACAGTCGTAAAGGCTGCCCCGCCCACAGCGGGGCGG
ACGAGTCGAAGCGGTGCAGGAGGGCGAGCAGCAGGAGCAGCAGGAGCAGG
AGCAGTATCACGGTCCTCGGAGGGAGGAGGAGGGGCCGGTGGAGGAAGGA
TGTCGACGCGGAGCAGCAGCATCAGCAGCAGTAGCAACACGGCCAGGAAT
AGCAGCAACAGTATTCGCACGAGCGTCAACAGTGGGGGGGGCTTGGTGAT
GACGGTCATGCAAACCCCTATGGGAGTCGGGGGGGGGAGGGCGACGCGCT
CCGGTCGAGGGCGGGTGCGAGGGATGGGAGGGGTGCACCAGACCCCCATG
ATGAAATTCGATCCCCGCCTGCCGACAACTCCGGGTATTCGGGCGCCGAG
GTATGGAGAGAGCGTGCTGAGTGTGAATGGCTCGCCGCTGCAGGTGCCAC
TGCCGGTGGACGCCGAAGCGATGGAAGATGAAGACACGGCCGCCTTCACG
CGCGCGGCCCTTGGAGGAGGGCGAGAGGGTGAAGGAGGAGGGAGTGGGTC
ACCGTCGTTGATGATTGAGCTGCCCAACGGCGGAGGAGAGACTGTGGACA
TCTTCAAGGACCCCTCGGCTTTGGCGCACATGGACAGCCAAATGAAGGCG
GACGTGGCGAGTAAGATCGAGAGACTGCAGAGTGGGCTTGCATATGTCTT
GCAGCATATCGGGGGGGCGTTGCTTGGTGGAGGAGGAGGAGGGGAGGGAG
GCGGGAAGAGCAATTGAATGTACTCCCGCGCCAAGCGCCTCCGTTTGGAA
GCGGAGGAGCACGCACTGTCCCTCCAGAATGCTTTTCATGTAGAGTTGAT
GAAGTTGCCCAAGTCAGTGCGGGCCATGTCACTGCGGGAGTTCTCTGAGC
AGTACGGCGAGGACATTCGCTCCGTGATGCGCCTGGCCGTGGAAGAAGAA
GCCTCTCGCGCCCTCTCCCAAAGCCACCACAAGCAGCAGCAACGGCAACA
ACAACAGCGGAGGAAAAAGGGTTTGACTGGCACAGTCGTAAAGGCTGCCC
CGCCCACAGCGGGGCGGACGAGTCGAAGCGGTGCAGGAGGGCGAGCAGCA
GGAGCAGCAGGAGCAGGAGCAGTATCACGGTCCTCGGAGGGAGGAGGAGG
GGCCGGTGGAGGAAGGATGTCGACGCGGAGCAGCAGCATCAGCAGCAGTA
GCAACACGGCCAGGAATAGCAGCAACAGTATTCGCACGAGCGTCAACAGT
GGGGGGGGCTTGGTGATGACGGTCATGCAAACCCCTATGGGAGTCGGGGG
GGGGAGGGCGACGCGCTCCGGTCGAGGGCGGGTGCGAGGGATGGGAGGGG
TGCACCAGACCCCCATGATGAAATTCGATCCCCGCCTGCCGACAACTCCG
GGTATTCGGGCGCCGAGGTATGGAGAGAGCGTGCTGAGTGTGAATGGCTC
GCCGCTGCAGGTGCCACTGCCGGTGGACGCCGAAGCGATGGAAGATGAAG
ACACGGCCGCCTTCACGCGCGCGGCCCTTGGAGGAGGGCGAGAGGGTGAA
GGAGGAGGGAGTGGGTCACCGTCGTTGATGATTGAGCTGCCCAACGGCGG
AGGAGAGACTGTGGACATCTTCAAGGACCCCTCGGCTTTGGCGCACATGG
ACAGCCAAATGAAGGCGGACGTGGCGAGTAAGATCGAGAGACTGCAGAGT
GGGCTTGCATATGTCTTGCAGCATATCGGGGGGGCGTTGCTTGGTGGAGG
AGGAGGAGGGGAGGGAGGCGGGAAGAGCAATTGAATGTACTCCCGCGCCA
AGCGCCTCCGTTTGGAAGCGGAGGAGCACGCACTGTCCCTCCAGAATGCT
TTTCATGTAGAGTTGATGAAGTTGCCCAAGTCAGTGCGGGCCATGTCACT
GCGGGAGTTCTCTGAGCAGTACGGCGAGGACATTCGCTCCGTGATGCGCC
TGGCCGTGGAAGAAGAAGCCTCTCGCGCCCTCTCCCAAAGCCACCACAAG
CAGCAGCAACGGCAACAACAACAGCGGAGGAAAAAGGGTTTGACTGGCAC
AGTCGTAAAGGCTGCCCCGCCCACAGCGGGGCGGACGAGTCGAAGCGGTG
CAGGAGGGCGAGCAGCAGGAGCAGCAGGAGCAGGAGCAGTATCACGGTCC
TCGGAGGGAGGAGGAGGGGCCGGTGGAGGAAGGATGTCGACGCGGAGCAG
CAGCATCAGCAGCAGTAGCAACACGGCCAGGAATAGCAGCAACAGTATTC
GCACGAGCGTCAACAGTGGGGGGGGCTTGGTGATGACGGTCATGCAAACC
CCTATGGGAGTCGGGGGGGGGAGGGCGACGCGCTCCGGTCGAGGGCGGGT
GCGAGGGATGGGAGGGGTGCACCAGACCCCCATGATGAAATTCGATCCCC
GCCTGCCGACAACTCCGGGTATTCGGGCGCCGAGGTATGGAGAGAGCGTG
CTGAGTGTGAATGGCTCGCCGCTGCAGGTGCCACTGCCGGTGGACGCCGA
AGCGATGGAAGATGAAGACACGGCCGCCTTCACGCGCGCGGCCCTTGGAG
GAGGGCGAGAGGGTGAAGGAGGAGGGAGTGGGTCACCGTCGTTGATGATT
GAGCTGCCCAACGGCGGAGGAGAGACTGTGGACATCTTCAAGGACCCCTC
GGCTTTGGCGCACATGGACAGCCAAATGAAGGCGGACGTGGCGAGTAAGA
TCGAGAGACTGCAGAGTGGGCTTGCATATGTCTTGCAGCATATCGGGGGG
GCGTTGCTTGGTGGAGGAGGAGGAGGGGAGGGAGGCGGGAAGAGCAATTG
AATGTACTCCCGCGCCAAGCGCCTCCGTTTGGAAGCGGAGGAGCACGCAC
TGTCCCTCCAGAATGCTTTTCATGTAGAGTTGATGAAGTTGCCCAAGTCA
GTGCGGGCCATGTCACTGCGGGAGTTCTCTGAGCAGTACGGCGAGGACAT
TCGCTCCGTGATGCGCCTGGCCGTGGAAGAAGAAGCCTCTCGCGCCCTCT
CCCAAAGCCACCACAAGCAGCAGCAACGGCAACAACAACAGCGGAGGAAA
AAGGGTTTGACTGGCACAGTCGTAAAGGCTGCCCCGCCCACAGCGGGGCG
GACGAGTCGAAGCGGTGCAGGAGGGCGAGCAGCAGGAGCAGCAGGAGCAG
GAGCAGTATCACGGTCCTCGGAGGGAGGAGGAGGGGCCGGTGGAGGAAGG
ATGTCGACGCGGAGCAGCAGCATCAGCAGCAGTAGCAACACGGCCAGGAA
TAGCAGCAACAGTATTCGCACGAGCGTCAACAGTGGGGGGGGCTTGGTGA
TGACGGTCATGCAAACCCCTATGGGAGTCGGGGGGGGGAGGGCGACGCGC
TCCGGTCGAGGGCGGGTGCGAGGGATGGGAGGGGTGCACCAGACCCCCAT
GATGAAATTCGATCCCCGCCTGCCGACAACTCCGGGTATTCGGGCGCCGA
GGTATGGAGAGAGCGTGCTGAGTGTGAATGGCTCGCCGCTGCAGGTGCCA
CTGCCGGTGGACGCCGAAGCGATGGAAGATGAAGACACGGCCGCCTTCAC
GCGCGCGGCCCTTGGAGGAGGGCGAGAGGGTGAAGGAGGAGGGAGTGGGT
CACCGTCGTTGATGATTGAGCTGCCCAACGGCGGAGGAGAGACTGTGGAC
ATCTTCAAGGACCCCTCGGCTTTGGCGCACATGGACAGCCAAATGAAGGC
GGACGTGGCGAGTAAGATCGAGAGACTGCAGAGTGGGCTTGCATATGTCT
TGCAGCATATCGGGGGGGCGTTGCTTGGTGGAGGAGGAGGAGGGGAGGGA
GGCGGGAAGAGCAATTGA

Synonyms

Publications