Properties
| Property Name | Value |
|---|
| TranscriptId | 581870 |
| Track | FilteredModels2 |
| ProteinId | 581784 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:37238..39352 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3335 ID=mRNA_3335|Name=jgi.p|Nanoce1779_2|581784|organism=Nannochloropsis oceanica|type=mRNA|length=1367bp
ACAGCAAACGAGCTAAGCGGCAAGCGCGATGCGTCATAGGCTTGTCTTCA
CTCTGCCGCGGTACTGGCCACCGCAGTCTCTTCAAGCTTCATCACTTGCC
GCCACATCAAGTACTCTTTCACGGAGACGCCCGCGCCACTTCTTCTCCTC
GCGCTCGTCAGTGCACGATGCGGAGGTCGAAAAGTTCAACGCTTACGGCC
AAGGGTGGTGGGACGACCAGAGCGGCCGTACGGGCGCAGGGCCCCTTCAC
GCCTTGAATCCCGTCCGGGTAAAATACATCCTCAATAAATGCGGTCGAAG
CCTCAATGCCGCACCTCCCAGCACCAACAGTGGCACAAGCAACGATAGTA
GCGGTCCATCGACGAAGAAGACCTTGCAAGGCGTCCGGATACTTGACGTG
GGTTGTGGCGGCGGGCTCTTGTCAGAGGCACTCGCACGCCTCGGCGCCTC
CGTCACAGGCATCGACCCGGCAGTCGGGAACATCGACGTGGCCCGAAGCC
ACGCCGCCGTGGACCCCCGCACCCGGGGCATCAAATACGAGCACGCCGCG
GTGGAGGACTTTTTGGCTTCAGGTGAGCGCTTCGATGCGGTAGTATCGTC
AGAAGTGATCGAGCACGTGGCTGCACCCGATGCCTTCGTCAAATCCTTGG
CGGGCATGCTAGCAGCTGAAGAAGAGGCAGGAGGTAAGAGCCGCGACGGG
GGGCACCTGGTCTTGACCACCATCAATCGCACCGCCAAGGCGTATCTCCT
CGCCATCTTGGGAGCCGAGTACATCGTGCGCATGGTGCCCAAAGGAACAC
ACGAATGGAGCAAGTTTCTACAACCCCAAGAAGTGGCTCGGATGGGCCGC
GCGGCCGGCCTCCGGGTTGAGGATGTGTGCGGGATGATCTACAACCCATT
TAATAACACGTGGAAGCTTGAGAAGGATGATATTGACGTGAATTATGCCA
TACACTTGGTCCAGGATGAGAGGAAGGGAACGTAATATGTAGGGGTGTAC
GTGGTGCTCCGGGGATTAGAGACGGAGGATTGGTTGGTAGAGCGTGAAAG
TGATCGGCTACTAAGGAAAGGCAAGGACTACACAACGTTTCATGAAGTGA
TTACGTGATGATCTTTCAAAAAAATGTTGATTTGCTGAATGACATTGACT
CATTTGCTTTGCTAAGTGACGCCTCCAACCTCCTCACCCCTCCTCCCCCC
CTCATTCATATAATAGTACCATCCATACATTGCGCTCGGATGTTCAAATT
CCAAATAAAGTTTGCCACCACAATGATCATTCTTGTTTCTTTCTCGCTTG
CATCAGAGCTCCAAGAAGAACAAGTGGAAAGAGGCGATAAGCGAGGAATT
GTTATCTCTTTGAGCGA back to topprotein sequence of jgi.p|Nanoce1779_2|581784 >mRNA_3335-protein ID=mRNA_3335-protein|Name=jgi.p|Nanoce1779_2|581784|organism=Nannochloropsis oceanica|type=polypeptide|length=319bp
MRHRLVFTLPRYWPPQSLQASSLAATSSTLSRRRPRHFFSSRSSVHDAEV
EKFNAYGQGWWDDQSGRTGAGPLHALNPVRVKYILNKCGRSLNAAPPSTN
SGTSNDSSGPSTKKTLQGVRILDVGCGGGLLSEALARLGASVTGIDPAVG
NIDVARSHAAVDPRTRGIKYEHAAVEDFLASGERFDAVVSSEVIEHVAAP
DAFVKSLAGMLAAEEEAGGKSRDGGHLVLTTINRTAKAYLLAILGAEYIV
RMVPKGTHEWSKFLQPQEVARMGRAAGLRVEDVCGMIYNPFNNTWKLEKD
DIDVNYAIHLVQDERKGT* back to topmRNA from alignment at scaffold_6:37238..39352- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3335 ID=mRNA_3335|Name=jgi.p|Nanoce1779_2|581784|organism=Nannochloropsis oceanica|type=mRNA|length=2115bp|location=Sequence derived from alignment at scaffold_6:37238..39352- (Nannochloropsis oceanica)
ACAGCAAACGAGCTAAGCGGCAAGCGCGATGCGTCATAGGCTTGTCTTCA
CTCTGCCGCGGTACTGGCCACCGCAGTCTCTTCAAGCTTCATCACTTGCC
GCCACATCAAGGTGCGTGCCCCATGACCACCATGAGGCACACGCAGGACC
CCAATCCCGCTTCATTAACACTGGCTTACCCACCCTCACTTGCTTCCTTC
TCTTTTTTTTTCTAAGTACTCTTTCACGGAGACGCCCGCGCCACTTCTTC
TCCTCGCGCTCGTCAGTGCACGATGCGGAGGTCGAAAAGTTCAACGCTTA
CGGCCAAGGGTGGTGGGACGACCAGAGCGGCCGTACGGGCGCAGGTACGT
TTTTCCCCTCTGTAGACTGCATCCTTTTCCTTCATTCAATAATCGCCATT
GTGTGATGCGTTTCTTCCACTCTGCCCGGCTTCCCAATCCCACCTCCCCC
CCCCTTTACCCGTTACAGGGCCCCTTCACGCCTTGAATCCCGTCCGGGTA
AAATACATCCTCAATAAATGCGGTCGAAGCCTCAATGCCGCACCTCCCAG
CACCAACAGTGGCACAAGCAACGATAGTAGCGGTCCATCGACGAAGAAGA
CCTTGCAAGGCGTCCGGATACTTGACGTGGGTTGTGGCGGCGGGCTCTTG
TCAGAGGCACTCGCACGGTACGGCTATCAATTGGGTTATGGTGATGGGAA
GATGGGGACACAAGAGGTTTTTTGCGCAGACTGACCCATTCGTTCTGTCT
TCTTTCTTCCCTCCTCATCATCCCTCTCCAGCCTCGGCGCCTCCGTCACA
GGCATCGACCCGGCAGTCGGGAACATCGACGTGGCCCGAAGCCACGCCGC
CGTGGACCCCCGCACCCGGGGCATCAAATACGAGCACGCCGCGGTGGAGG
ACTTTTTGGGTAGGGAGGGAGAGTGGATGGGGAGAGGGAAGACTCTGTTT
TGTTCCTCGTCGTCTGTCCGTGACTGATAATCAGCGACTTTTCCCTCTTT
TCTTTTCTCCCTCCCTCCCTCCCTCCCCATCCCCTTCGTCTAGCTTCAGG
TGAGCGCTTCGATGCGGTAGTATCGTCAGAAGTGATCGAGCACGTGGCTG
CACCCGATGCCTTCGTCAAATCCTTGGCGGGCATGCTAGCAGCTGAAGAA
GAGGCAGGAGGTAAGAGCCGCGACGGGGGGCACCTGGTCTTGACCACCAT
CAATCGCACCGCCAAGGCGTATCTCCTCGCCATCTTGGGAGCCGAGTACA
TCGTGCGCATGGTGCCCAAAGGTAAGTACACTCGTTTTATTTTCCACAGA
CTTCATTCTGCCTTCGCTTTCCAAGGTCCTCCTTCCTCCTCCCTTCCTCC
TTGCGGTTACCCTACAATCAATTCCATCTTGTTGTTCCGCTCTAGGCACG
TCAAGACAAAGGCAACGTCCTTGCTTGTCAAGTAAAGATAGCTCACCACT
TAACCTCTCTCTTGTTTTCCCTTTCTCTCTTCTTTCCTTTCCTCCCCTCT
CCCCTCCCGCCTTCCCTCTCTCTCTTCCTCCTCCATCCCTAGGAACACAC
GAATGGAGCAAGTTTCTACAACCCCAAGAAGTGGCTCGGATGGGCCGCGC
GGCCGGCCTCCGGGTTGAGGATGTGTGCGGGATGATCTACAACCCATTTA
ATAACACGTGGAAGCTTGAGAAGGATGATATTGACGTGAATTATGCCATA
CACTTGGTCCAGGATGAGAGGAAGGGAACGTAATATGTAGGGGTGTACGT
GGTGCTCCGGGGATTAGAGACGGAGGATTGGTTGGTAGAGCGTGAAAGTG
ATCGGCTACTAAGGAAAGGCAAGGACTACACAACGTTTCATGAAGTGATT
ACGTGATGATCTTTCAAAAAAATGTTGATTTGCTGAATGACATTGACTCA
TTTGCTTTGCTAAGTGACGCCTCCAACCTCCTCACCCCTCCTCCCCCCCT
CATTCATATAATAGTACCATCCATACATTGCGCTCGGATGTTCAAATTCC
AAATAAAGTTTGCCACCACAATGATCATTCTTGTTTCTTTCTCGCTTGCA
TCAGAGCTCCAAGAAGAACAAGTGGAAAGAGGCGATAAGCGAGGAATTGT
TATCTCTTTGAGCGA back to topCoding sequence (CDS) from alignment at scaffold_6:37238..39352- >mRNA_3335 ID=mRNA_3335|Name=jgi.p|Nanoce1779_2|581784|organism=Nannochloropsis oceanica|type=CDS|length=5742bp|location=Sequence derived from alignment at scaffold_6:37238..39352- (Nannochloropsis oceanica)
GAACACACGAATGGAGCAAGTTTCTACAACCCCAAGAAGTGGCTCGGATG
GGCCGCGCGGCCGGCCTCCGGGTTGAGGATGTGTGCGGGATGATCTACAA
CCCATTTAATAACACGTGGAAGCTTGAGAAGGATGATATTGACGTGAATT
ATGCCATACACTTGGTCCAGGATGAGAGGAAGGGAACGTAACTTCAGGTG
AGCGCTTCGATGCGGTAGTATCGTCAGAAGTGATCGAGCACGTGGCTGCA
CCCGATGCCTTCGTCAAATCCTTGGCGGGCATGCTAGCAGCTGAAGAAGA
GGCAGGAGGTAAGAGCCGCGACGGGGGGCACCTGGTCTTGACCACCATCA
ATCGCACCGCCAAGGCGTATCTCCTCGCCATCTTGGGAGCCGAGTACATC
GTGCGCATGGTGCCCAAAGCCTCGGCGCCTCCGTCACAGGCATCGACCCG
GCAGTCGGGAACATCGACGTGGCCCGAAGCCACGCCGCCGTGGACCCCCG
CACCCGGGGCATCAAATACGAGCACGCCGCGGTGGAGGACTTTTTGGGGC
CCCTTCACGCCTTGAATCCCGTCCGGGTAAAATACATCCTCAATAAATGC
GGTCGAAGCCTCAATGCCGCACCTCCCAGCACCAACAGTGGCACAAGCAA
CGATAGTAGCGGTCCATCGACGAAGAAGACCTTGCAAGGCGTCCGGATAC
TTGACGTGGGTTGTGGCGGCGGGCTCTTGTCAGAGGCACTCGCACGTACT
CTTTCACGGAGACGCCCGCGCCACTTCTTCTCCTCGCGCTCGTCAGTGCA
CGATGCGGAGGTCGAAAAGTTCAACGCTTACGGCCAAGGGTGGTGGGACG
ACCAGAGCGGCCGTACGGGCGCAGATGCGTCATAGGCTTGTCTTCACTCT
GCCGCGGTACTGGCCACCGCAGTCTCTTCAAGCTTCATCACTTGCCGCCA
CATCAAGGAACACACGAATGGAGCAAGTTTCTACAACCCCAAGAAGTGGC
TCGGATGGGCCGCGCGGCCGGCCTCCGGGTTGAGGATGTGTGCGGGATGA
TCTACAACCCATTTAATAACACGTGGAAGCTTGAGAAGGATGATATTGAC
GTGAATTATGCCATACACTTGGTCCAGGATGAGAGGAAGGGAACGTAACT
TCAGGTGAGCGCTTCGATGCGGTAGTATCGTCAGAAGTGATCGAGCACGT
GGCTGCACCCGATGCCTTCGTCAAATCCTTGGCGGGCATGCTAGCAGCTG
AAGAAGAGGCAGGAGGTAAGAGCCGCGACGGGGGGCACCTGGTCTTGACC
ACCATCAATCGCACCGCCAAGGCGTATCTCCTCGCCATCTTGGGAGCCGA
GTACATCGTGCGCATGGTGCCCAAAGCCTCGGCGCCTCCGTCACAGGCAT
CGACCCGGCAGTCGGGAACATCGACGTGGCCCGAAGCCACGCCGCCGTGG
ACCCCCGCACCCGGGGCATCAAATACGAGCACGCCGCGGTGGAGGACTTT
TTGGGGCCCCTTCACGCCTTGAATCCCGTCCGGGTAAAATACATCCTCAA
TAAATGCGGTCGAAGCCTCAATGCCGCACCTCCCAGCACCAACAGTGGCA
CAAGCAACGATAGTAGCGGTCCATCGACGAAGAAGACCTTGCAAGGCGTC
CGGATACTTGACGTGGGTTGTGGCGGCGGGCTCTTGTCAGAGGCACTCGC
ACGTACTCTTTCACGGAGACGCCCGCGCCACTTCTTCTCCTCGCGCTCGT
CAGTGCACGATGCGGAGGTCGAAAAGTTCAACGCTTACGGCCAAGGGTGG
TGGGACGACCAGAGCGGCCGTACGGGCGCAGATGCGTCATAGGCTTGTCT
TCACTCTGCCGCGGTACTGGCCACCGCAGTCTCTTCAAGCTTCATCACTT
GCCGCCACATCAAGGAACACACGAATGGAGCAAGTTTCTACAACCCCAAG
AAGTGGCTCGGATGGGCCGCGCGGCCGGCCTCCGGGTTGAGGATGTGTGC
GGGATGATCTACAACCCATTTAATAACACGTGGAAGCTTGAGAAGGATGA
TATTGACGTGAATTATGCCATACACTTGGTCCAGGATGAGAGGAAGGGAA
CGTAACTTCAGGTGAGCGCTTCGATGCGGTAGTATCGTCAGAAGTGATCG
AGCACGTGGCTGCACCCGATGCCTTCGTCAAATCCTTGGCGGGCATGCTA
GCAGCTGAAGAAGAGGCAGGAGGTAAGAGCCGCGACGGGGGGCACCTGGT
CTTGACCACCATCAATCGCACCGCCAAGGCGTATCTCCTCGCCATCTTGG
GAGCCGAGTACATCGTGCGCATGGTGCCCAAAGCCTCGGCGCCTCCGTCA
CAGGCATCGACCCGGCAGTCGGGAACATCGACGTGGCCCGAAGCCACGCC
GCCGTGGACCCCCGCACCCGGGGCATCAAATACGAGCACGCCGCGGTGGA
GGACTTTTTGGGGCCCCTTCACGCCTTGAATCCCGTCCGGGTAAAATACA
TCCTCAATAAATGCGGTCGAAGCCTCAATGCCGCACCTCCCAGCACCAAC
AGTGGCACAAGCAACGATAGTAGCGGTCCATCGACGAAGAAGACCTTGCA
AGGCGTCCGGATACTTGACGTGGGTTGTGGCGGCGGGCTCTTGTCAGAGG
CACTCGCACGTACTCTTTCACGGAGACGCCCGCGCCACTTCTTCTCCTCG
CGCTCGTCAGTGCACGATGCGGAGGTCGAAAAGTTCAACGCTTACGGCCA
AGGGTGGTGGGACGACCAGAGCGGCCGTACGGGCGCAGATGCGTCATAGG
CTTGTCTTCACTCTGCCGCGGTACTGGCCACCGCAGTCTCTTCAAGCTTC
ATCACTTGCCGCCACATCAAGGAACACACGAATGGAGCAAGTTTCTACAA
CCCCAAGAAGTGGCTCGGATGGGCCGCGCGGCCGGCCTCCGGGTTGAGGA
TGTGTGCGGGATGATCTACAACCCATTTAATAACACGTGGAAGCTTGAGA
AGGATGATATTGACGTGAATTATGCCATACACTTGGTCCAGGATGAGAGG
AAGGGAACGTAACTTCAGGTGAGCGCTTCGATGCGGTAGTATCGTCAGAA
GTGATCGAGCACGTGGCTGCACCCGATGCCTTCGTCAAATCCTTGGCGGG
CATGCTAGCAGCTGAAGAAGAGGCAGGAGGTAAGAGCCGCGACGGGGGGC
ACCTGGTCTTGACCACCATCAATCGCACCGCCAAGGCGTATCTCCTCGCC
ATCTTGGGAGCCGAGTACATCGTGCGCATGGTGCCCAAAGCCTCGGCGCC
TCCGTCACAGGCATCGACCCGGCAGTCGGGAACATCGACGTGGCCCGAAG
CCACGCCGCCGTGGACCCCCGCACCCGGGGCATCAAATACGAGCACGCCG
CGGTGGAGGACTTTTTGGGGCCCCTTCACGCCTTGAATCCCGTCCGGGTA
AAATACATCCTCAATAAATGCGGTCGAAGCCTCAATGCCGCACCTCCCAG
CACCAACAGTGGCACAAGCAACGATAGTAGCGGTCCATCGACGAAGAAGA
CCTTGCAAGGCGTCCGGATACTTGACGTGGGTTGTGGCGGCGGGCTCTTG
TCAGAGGCACTCGCACGTACTCTTTCACGGAGACGCCCGCGCCACTTCTT
CTCCTCGCGCTCGTCAGTGCACGATGCGGAGGTCGAAAAGTTCAACGCTT
ACGGCCAAGGGTGGTGGGACGACCAGAGCGGCCGTACGGGCGCAGATGCG
TCATAGGCTTGTCTTCACTCTGCCGCGGTACTGGCCACCGCAGTCTCTTC
AAGCTTCATCACTTGCCGCCACATCAAGGAACACACGAATGGAGCAAGTT
TCTACAACCCCAAGAAGTGGCTCGGATGGGCCGCGCGGCCGGCCTCCGGG
TTGAGGATGTGTGCGGGATGATCTACAACCCATTTAATAACACGTGGAAG
CTTGAGAAGGATGATATTGACGTGAATTATGCCATACACTTGGTCCAGGA
TGAGAGGAAGGGAACGTAACTTCAGGTGAGCGCTTCGATGCGGTAGTATC
GTCAGAAGTGATCGAGCACGTGGCTGCACCCGATGCCTTCGTCAAATCCT
TGGCGGGCATGCTAGCAGCTGAAGAAGAGGCAGGAGGTAAGAGCCGCGAC
GGGGGGCACCTGGTCTTGACCACCATCAATCGCACCGCCAAGGCGTATCT
CCTCGCCATCTTGGGAGCCGAGTACATCGTGCGCATGGTGCCCAAAGCCT
CGGCGCCTCCGTCACAGGCATCGACCCGGCAGTCGGGAACATCGACGTGG
CCCGAAGCCACGCCGCCGTGGACCCCCGCACCCGGGGCATCAAATACGAG
CACGCCGCGGTGGAGGACTTTTTGGGGCCCCTTCACGCCTTGAATCCCGT
CCGGGTAAAATACATCCTCAATAAATGCGGTCGAAGCCTCAATGCCGCAC
CTCCCAGCACCAACAGTGGCACAAGCAACGATAGTAGCGGTCCATCGACG
AAGAAGACCTTGCAAGGCGTCCGGATACTTGACGTGGGTTGTGGCGGCGG
GCTCTTGTCAGAGGCACTCGCACGTACTCTTTCACGGAGACGCCCGCGCC
ACTTCTTCTCCTCGCGCTCGTCAGTGCACGATGCGGAGGTCGAAAAGTTC
AACGCTTACGGCCAAGGGTGGTGGGACGACCAGAGCGGCCGTACGGGCGC
AGATGCGTCATAGGCTTGTCTTCACTCTGCCGCGGTACTGGCCACCGCAG
TCTCTTCAAGCTTCATCACTTGCCGCCACATCAAGGAACACACGAATGGA
GCAAGTTTCTACAACCCCAAGAAGTGGCTCGGATGGGCCGCGCGGCCGGC
CTCCGGGTTGAGGATGTGTGCGGGATGATCTACAACCCATTTAATAACAC
GTGGAAGCTTGAGAAGGATGATATTGACGTGAATTATGCCATACACTTGG
TCCAGGATGAGAGGAAGGGAACGTAACTTCAGGTGAGCGCTTCGATGCGG
TAGTATCGTCAGAAGTGATCGAGCACGTGGCTGCACCCGATGCCTTCGTC
AAATCCTTGGCGGGCATGCTAGCAGCTGAAGAAGAGGCAGGAGGTAAGAG
CCGCGACGGGGGGCACCTGGTCTTGACCACCATCAATCGCACCGCCAAGG
CGTATCTCCTCGCCATCTTGGGAGCCGAGTACATCGTGCGCATGGTGCCC
AAAGCCTCGGCGCCTCCGTCACAGGCATCGACCCGGCAGTCGGGAACATC
GACGTGGCCCGAAGCCACGCCGCCGTGGACCCCCGCACCCGGGGCATCAA
ATACGAGCACGCCGCGGTGGAGGACTTTTTGGGGCCCCTTCACGCCTTGA
ATCCCGTCCGGGTAAAATACATCCTCAATAAATGCGGTCGAAGCCTCAAT
GCCGCACCTCCCAGCACCAACAGTGGCACAAGCAACGATAGTAGCGGTCC
ATCGACGAAGAAGACCTTGCAAGGCGTCCGGATACTTGACGTGGGTTGTG
GCGGCGGGCTCTTGTCAGAGGCACTCGCACGTACTCTTTCACGGAGACGC
CCGCGCCACTTCTTCTCCTCGCGCTCGTCAGTGCACGATGCGGAGGTCGA
AAAGTTCAACGCTTACGGCCAAGGGTGGTGGGACGACCAGAGCGGCCGTA
CGGGCGCAGATGCGTCATAGGCTTGTCTTCACTCTGCCGCGGTACTGGCC
ACCGCAGTCTCTTCAAGCTTCATCACTTGCCGCCACATCAAG back to top
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