jgi.p|Nanoce1779_2|357310, mRNA_3331 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|357310
Unique NamemRNA_3331
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1128
Alignment locationscaffold_6:23488..25149 -

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Properties
Property NameValue
TranscriptId357396
TrackFilteredModels2
ProteinId357310
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:23488..25149 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|357310gene_3331Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|357310mRNA_3331-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3331CDS_3331Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3331 ID=mRNA_3331|Name=jgi.p|Nanoce1779_2|357310|organism=Nannochloropsis oceanica|type=mRNA|length=1128bp
GAAGAACTATGTATGTTTCGTTCACACCCCCTGTTGGAACATGCTTGTGG
TGATGGTTGTGTTTCGCAATTCGGCAGATTTGTTGCTTTCAGCTGGCCTT
GCGCGGCGTGCAAATTGCAATGCATTCTTTCTCGTGCGTAACTCATGATT
TTATCATTATCCACTGTTTTTGATCTTCGCCCTTTCCCCCCACCCAACGT
GATTATCACAGTAAAACATCCTCCTCAAGGCTCTTCGCATCCCGCCCTAC
GCCACCTTGCCGGTACCATGGCCCAATGGGTGCTACCACCCACGAGCCTG
CTCCTCCTGCTGTGCCTGGCCACCACCCTCACCGCCAGCAATGTCGGCAT
TACCAACTCTGTGGCTACGTCCGCGCGTACAGGTTCAAACATTTACAAAG
TCGACGAGAAAATAATTGGGACGGTCTCCGACGCCCTCCCCTCCCCTTCC
CGCCTCCTCCGCCTCTCACCAAACCAGGGGGGCGTCCGTCACAAAGTTAT
ACACGACTTTCTCTCCTCCACTTTTCTGGTCATTGCTATTGTGGCGATGT
TCCTGGTAGTGTTGTGTGTGATAAATTGTAGTTGCAATCGATTATGCCCT
TGTCTGTGCGGGGACGAAGCAGCAATCGTTCGAGCCGAGCTGATGGCGAT
GGAAAGGAGGTCAGTCGGAAAGGACGAGGAAGGAGAGGTCGAGGACGTTC
AGGGCGGAACAGGGGGCAAGGATAGCGTGGCAGATGAAGTAGGGATCGCG
ATGGTAGCGGGAGAGGAGAAGAAAGAAGGGGAGGAGGGAGACACGAAGGA
GGGAGGGGGAAGGATGAAGATAGACGATGAGGAATCGGAGGCGTCCGTTT
CACTTTCAACGCCCTTGAAGTCCTTGTCCTCGTCGCTGCTAGCGCTGCTT
GCGATGAAAGCATGGACCTCACCGACAGCAGGGATTTCTGAAGGAAAGCA
GGAAGAGAGGTCGAAGAAGGTGGAGCAGGAGATGGCGCAGCAGCAGGAGG
AGGAGAAGGATTGCTTGGCGGTGGAGTAAAAAAGATGGAGAGAGAAAGAG
GCGATGAAGGGAGGGAGATAGGGAGAATTACAGCGCCCTTGATTGGTTGG
ACGGGAGAGGAGATTCGAGGCGCGGGGC
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protein sequence of jgi.p|Nanoce1779_2|357310

>mRNA_3331-protein ID=mRNA_3331-protein|Name=jgi.p|Nanoce1779_2|357310|organism=Nannochloropsis oceanica|type=polypeptide|length=295bp
MILSLSTVFDLRPFPPPNVIITVKHPPQGSSHPALRHLAGTMAQWVLPPT
SLLLLLCLATTLTASNVGITNSVATSARTGSNIYKVDEKIIGTVSDALPS
PSRLLRLSPNQGGVRHKVIHDFLSSTFLVIAIVAMFLVVLCVINCSCNRL
CPCLCGDEAAIVRAELMAMERRSVGKDEEGEVEDVQGGTGGKDSVADEVG
IAMVAGEEKKEGEEGDTKEGGGRMKIDDEESEASVSLSTPLKSLSSSLLA
LLAMKAWTSPTAGISEGKQEERSKKVEQEMAQQQEEEKDCLAVE*
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mRNA from alignment at scaffold_6:23488..25149-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3331 ID=mRNA_3331|Name=jgi.p|Nanoce1779_2|357310|organism=Nannochloropsis oceanica|type=mRNA|length=1662bp|location=Sequence derived from alignment at scaffold_6:23488..25149- (Nannochloropsis oceanica)
GAAGAACTATGTATGTTTCGTTCACACCCCCTGTTGGAACATGCTTGTGG
TGATGGTTGTGTTTCGCAATTCGGCAGATTTGTTGCTTTCAGCTGGCCTT
GCGCGGCGTGCAAATTGCAATGCATTCTTTCTCGTGCGTAACTCATGATT
TTATCATTATCCACTGTTTTTGATCTTCGCCCTTTCCCCCCACCCAACGT
GATTATCACAGTAAAACATCCTCCTCAAGGCTCTTCGCATCCCGCCCTAC
GCCACCTTGCCGGTACCATGGCCCAATGGGTGCTACCACCCACGAGCCTG
CTCCTCCTGCTGTGCCTGGCCACCACCCTCACCGCCAGCAATGTCGGCAT
TACCAACTCTGTGGCTACGTCCGCGCGTACAGGTTCAAACATTTACAAAG
TCGACGAGAAAATAATTGGTGCGTTGAGTCGATCAGCAAATAGAGGTGGG
AGGGAGGTAGCTGTGCCTATAGATATATGGAAGGGAAAGCCTGCCTGGCG
GAGGATGTGATGCGGTACTCTCAATGTGGAATGGGCTGCTGTCTCCTTGA
GGTATGAGGGAGTTTGTGACGCAATCACTTGAGGCCCGTCTGCATCTCCC
ATTTGCACAGCTCTTTCGTATATATTTCTGATCGTTGCTATGCGTTGACC
GGCATCATTGCCTTTTCCACGCACTCTCTGCTCTGCACCACTTTCTCCGT
TTCTACCTCCCTTCTTCCAGCCCTCAATCTCTCCCTCCCTTCTCCTTCAA
AACCAGTATCACTCATCTTATCTTATCTTCTCCTCACCCACACACTCACC
CATCCCTCAAATCGCTTCCTTGCCTTTCTCCCGAAAAGGGACGGTCTCCG
ACGCCCTCCCCTCCCCTTCCCGCCTCCTCCGCCTCTCACCAAACCAGGGG
GGCGTCCGTCACAAAGTTATACACGACTTTCTCTCCTCCACTTTTCTGGT
CATTGCTATTGTGGCGATGTTCCTGGTAGTGTTGTGTGTGATAAATTGTA
GTTGCAATCGATTATGCCCTTGTCTGTGCGGGGACGAAGCAGCAATCGTT
CGAGCCGAGCTGATGGCGATGGAAAGGAGGTCAGTCGGAAAGGACGAGGA
AGGAGAGGTCGAGGACGTTCAGGGCGGAACAGGGGGCAAGGATAGCGTGG
CAGATGAAGTAGGGATCGCGATGGTAGCGGGAGAGGAGAAGAAAGAAGGG
GAGGAGGGAGACACGAAGGAGGGAGGGGGAAGGATGAAGATAGACGATGA
GGAATCGGAGGCGTCCGTTTCACTTTCAACGCCCTTGAAGTCCTTGTCCT
CGTCGCTGCTAGCGCTGCTTGCGATGAAAGCATGGACCTCACCGACAGCA
GGGATTTCTGAAGGAAAGCAGGAAGAGAGGTCGAAGAAGGTGGAGCAGGA
GATGGCGCAGCAGCAGGAGGAGGAGAAGGATGCAGGCAGGGAGGGAGGGA
TGAAAAAATTGGGGGAAACGTTTGAGCTGCAAATGCAGCGGTTAAAGGAA
AGGGAGGGAGGGTTGGAAGGAGGGTTGATAGAAGAATCGAAGGAGTGCTT
GGCGGTGGAGTAAAAAAGATGGAGAGAGAAAGAGGCGATGAAGGGAGGGA
GATAGGGAGAATTACAGCGCCCTTGATTGGTTGGACGGGAGAGGAGATTC
GAGGCGCGGGGC
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Coding sequence (CDS) from alignment at scaffold_6:23488..25149-

>mRNA_3331 ID=mRNA_3331|Name=jgi.p|Nanoce1779_2|357310|organism=Nannochloropsis oceanica|type=CDS|length=2655bp|location=Sequence derived from alignment at scaffold_6:23488..25149- (Nannochloropsis oceanica)
TGCTTGGCGGTGGAGTAAGGACGGTCTCCGACGCCCTCCCCTCCCCTTCC
CGCCTCCTCCGCCTCTCACCAAACCAGGGGGGCGTCCGTCACAAAGTTAT
ACACGACTTTCTCTCCTCCACTTTTCTGGTCATTGCTATTGTGGCGATGT
TCCTGGTAGTGTTGTGTGTGATAAATTGTAGTTGCAATCGATTATGCCCT
TGTCTGTGCGGGGACGAAGCAGCAATCGTTCGAGCCGAGCTGATGGCGAT
GGAAAGGAGGTCAGTCGGAAAGGACGAGGAAGGAGAGGTCGAGGACGTTC
AGGGCGGAACAGGGGGCAAGGATAGCGTGGCAGATGAAGTAGGGATCGCG
ATGGTAGCGGGAGAGGAGAAGAAAGAAGGGGAGGAGGGAGACACGAAGGA
GGGAGGGGGAAGGATGAAGATAGACGATGAGGAATCGGAGGCGTCCGTTT
CACTTTCAACGCCCTTGAAGTCCTTGTCCTCGTCGCTGCTAGCGCTGCTT
GCGATGAAAGCATGGACCTCACCGACAGCAGGGATTTCTGAAGGAAAGCA
GGAAGAGAGGTCGAAGAAGGTGGAGCAGGAGATGGCGCAGCAGCAGGAGG
AGGAGAAGGATATGATTTTATCATTATCCACTGTTTTTGATCTTCGCCCT
TTCCCCCCACCCAACGTGATTATCACAGTAAAACATCCTCCTCAAGGCTC
TTCGCATCCCGCCCTACGCCACCTTGCCGGTACCATGGCCCAATGGGTGC
TACCACCCACGAGCCTGCTCCTCCTGCTGTGCCTGGCCACCACCCTCACC
GCCAGCAATGTCGGCATTACCAACTCTGTGGCTACGTCCGCGCGTACAGG
TTCAAACATTTACAAAGTCGACGAGAAAATAATTGTGCTTGGCGGTGGAG
TAAGGACGGTCTCCGACGCCCTCCCCTCCCCTTCCCGCCTCCTCCGCCTC
TCACCAAACCAGGGGGGCGTCCGTCACAAAGTTATACACGACTTTCTCTC
CTCCACTTTTCTGGTCATTGCTATTGTGGCGATGTTCCTGGTAGTGTTGT
GTGTGATAAATTGTAGTTGCAATCGATTATGCCCTTGTCTGTGCGGGGAC
GAAGCAGCAATCGTTCGAGCCGAGCTGATGGCGATGGAAAGGAGGTCAGT
CGGAAAGGACGAGGAAGGAGAGGTCGAGGACGTTCAGGGCGGAACAGGGG
GCAAGGATAGCGTGGCAGATGAAGTAGGGATCGCGATGGTAGCGGGAGAG
GAGAAGAAAGAAGGGGAGGAGGGAGACACGAAGGAGGGAGGGGGAAGGAT
GAAGATAGACGATGAGGAATCGGAGGCGTCCGTTTCACTTTCAACGCCCT
TGAAGTCCTTGTCCTCGTCGCTGCTAGCGCTGCTTGCGATGAAAGCATGG
ACCTCACCGACAGCAGGGATTTCTGAAGGAAAGCAGGAAGAGAGGTCGAA
GAAGGTGGAGCAGGAGATGGCGCAGCAGCAGGAGGAGGAGAAGGATATGA
TTTTATCATTATCCACTGTTTTTGATCTTCGCCCTTTCCCCCCACCCAAC
GTGATTATCACAGTAAAACATCCTCCTCAAGGCTCTTCGCATCCCGCCCT
ACGCCACCTTGCCGGTACCATGGCCCAATGGGTGCTACCACCCACGAGCC
TGCTCCTCCTGCTGTGCCTGGCCACCACCCTCACCGCCAGCAATGTCGGC
ATTACCAACTCTGTGGCTACGTCCGCGCGTACAGGTTCAAACATTTACAA
AGTCGACGAGAAAATAATTGTGCTTGGCGGTGGAGTAAGGACGGTCTCCG
ACGCCCTCCCCTCCCCTTCCCGCCTCCTCCGCCTCTCACCAAACCAGGGG
GGCGTCCGTCACAAAGTTATACACGACTTTCTCTCCTCCACTTTTCTGGT
CATTGCTATTGTGGCGATGTTCCTGGTAGTGTTGTGTGTGATAAATTGTA
GTTGCAATCGATTATGCCCTTGTCTGTGCGGGGACGAAGCAGCAATCGTT
CGAGCCGAGCTGATGGCGATGGAAAGGAGGTCAGTCGGAAAGGACGAGGA
AGGAGAGGTCGAGGACGTTCAGGGCGGAACAGGGGGCAAGGATAGCGTGG
CAGATGAAGTAGGGATCGCGATGGTAGCGGGAGAGGAGAAGAAAGAAGGG
GAGGAGGGAGACACGAAGGAGGGAGGGGGAAGGATGAAGATAGACGATGA
GGAATCGGAGGCGTCCGTTTCACTTTCAACGCCCTTGAAGTCCTTGTCCT
CGTCGCTGCTAGCGCTGCTTGCGATGAAAGCATGGACCTCACCGACAGCA
GGGATTTCTGAAGGAAAGCAGGAAGAGAGGTCGAAGAAGGTGGAGCAGGA
GATGGCGCAGCAGCAGGAGGAGGAGAAGGATATGATTTTATCATTATCCA
CTGTTTTTGATCTTCGCCCTTTCCCCCCACCCAACGTGATTATCACAGTA
AAACATCCTCCTCAAGGCTCTTCGCATCCCGCCCTACGCCACCTTGCCGG
TACCATGGCCCAATGGGTGCTACCACCCACGAGCCTGCTCCTCCTGCTGT
GCCTGGCCACCACCCTCACCGCCAGCAATGTCGGCATTACCAACTCTGTG
GCTACGTCCGCGCGTACAGGTTCAAACATTTACAAAGTCGACGAGAAAAT
AATTG
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Synonyms
Publications