jgi.p|Nanoce1779_2|628789, mRNA_3330 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|628789
Unique Name	mRNA_3330
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1727
Alignment location	scaffold_6:21454..23180 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	628875
Track	FilteredModels2
ProteinId	628789

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:21454..23180 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|628789	gene_3330	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|628789	mRNA_3330-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3330	CDS_3330	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:21454..23180+
coding sequence from alignment at scaffold_6:21454..23180+

mRNA sequence

>mRNA_3330 ID=mRNA_3330|Name=jgi.p|Nanoce1779_2|628789|organism=Nannochloropsis oceanica|type=mRNA|length=1727bp
ATGAAAATGCTGCCACCGGAAGCGCAGGACAAGATTTACGCTCATTACAA
GACACGACTTTTCGAAAAGGTGAACCTTATAAAAGAGCAACGCCGACAAA
TGATTATGAAGGCGCGGGGGGAGGAGGGGTACAATTTCTTGCTGCTTGAT
GATGATGATGATGAAGGCGGTACCAACACTGCTCAAGCGCATGGTGCTGG
CAGCCTCGATCCAACAGCTCTGTCTCGAACCCGAGCCTCTCCACGAAACA
TCCGTCCCCACGGCAAAGGCGGCGGGGAGGATGACAAGGAGCCACACGAT
ATGGAAGCCCGCGCCGCATATTTGAAGTCTGCCATGATGGAAATGGAGGT
ACGAAGGATCGAAGCTGTGAAAAAGCGCCAGGAAAAGGAGTTTTCAAGGA
TGGTGGAGGGTGAGAAACGGACTATTTTGTTGCAGCAGAAGCTGTTGGCG
GCATCAGAGGAGGAAATGGCCAGGAAGAAGGCACACGAGAAAGAAGTGGC
ATGGCATCGCAAAATTGAATTCCAAAAGAAGCAGGAACGGGACCGGGAGG
TGCAGCGACAAATGGAAGAGGAGCAGAAGCGTCGGAGGGAAATAGCTCGA
AAGGACGGGGCACTCAAGGACAAGTTGACGGCTGAGGCCCGGGCGGCAGA
GCGAATACGACGCCATAAAGCTGTCCTTCGCGAAGAAGAGCGCCGTGCCA
AGCTCGAGGTCTTGCGGCAGCGTACAGAAGAGATTCTAAAAGACCAGGAA
CGGCGAGGAGAGGCCCAACGCCGCGAGATTGAGGCGCGCGAGGCCAGAGT
CAAGGCCCAGGTGATGGCGAAGAAGGAAGCAAAAGCTAATGAGATCCAGA
CTGCACGGAACAAAGCTGAAAAACGAATTCAAGGTGCGTTGCTCAGAAAT
CATGCGATCCAAGAGGCCAAACGCAAAGCTTACCAAGCAAGAGCAGCCGA
GGCTGCTGCCCGCGCGGAGCAGAATCACGTGGAGCTGTTGGAGGCAGCGG
CCAAAGCGGCCGAGGGGCGCAAGGCCAAGCAAGCCAAGGCGGACGAGCGC
TATCAATGTGCTGTACAAGGACTGCAAGATCGTATACAGAAAACGTTGAC
TCGGGCAGAGAATCGCGCACATTTCTACGCTAAGGTGGCAGCAGAGCGAG
CACAAGCCACGCTGTTAATGCGAGTGGAGAAGGAGCTGAGGCAGAAAGAT
AAGGAGGAGAACGTCAAAAGGATACAGCGGAAGGAAGAGTATGAAAAATC
GTGTTTGTTGGCAAGGCAGGAGGCGGACACGGCGCGGTACGAGGAAATCA
AGCGAGAGAGGGCGTACTTATTAGAGCAACGAAAAGCGACTGCGCAGGAG
ACAATGATAAGGAAGCATCGTCTGCGAGAGGCCATGGAGGAAATGAAGAT
TAAAAATCGATTCTGGGTTGAGGGGGTGGGGGGAGACGGAGGAGAGGAAA
GACGAAAGGGTGGCAAGCCCCATGAGACAAGCTCGGTCGGAGGGGGAAGG
GGAAGAGGGAGAGAACGAGGAAGTAAGGACGGAGGTGGAGGCCGCCCTGC
GTCGGCCATGGTGTAAGACAAATTACTGAGGCAATGGCACGCTAAATCAG
GACGAGAAAAGTCAGTAAGGAACCACATCACTACATGTTCGCAGGGAAAA
TGGCGGCCAGGGGTGATGCAGTTGCACATGGCAGACCAAGAGATGCGCTG
AAAAGGGCGAAGAAAGGCAAGCAAGTG

protein sequence of jgi.p|Nanoce1779_2|628789

>mRNA_3330-protein ID=mRNA_3330-protein|Name=jgi.p|Nanoce1779_2|628789|organism=Nannochloropsis oceanica|type=polypeptide|length=522bp
MKMLPPEAQDKIYAHYKTRLFEKVNLIKEQRRQMIMKARGEEGYNFLLLD
DDDDEGGTNTAQAHGAGSLDPTALSRTRASPRNIRPHGKGGGEDDKEPHD
MEARAAYLKSAMMEMEVRRIEAVKKRQEKEFSRMVEGEKRTILLQQKLLA
ASEEEMARKKAHEKEVAWHRKIEFQKKQERDREVQRQMEEEQKRRREIAR
KDGALKDKLTAEARAAERIRRHKAVLREEERRAKLEVLRQRTEEILKDQE
RRGEAQRREIEAREARVKAQVMAKKEAKANEIQTARNKAEKRIQGALLRN
HAIQEAKRKAYQARAAEAAARAEQNHVELLEAAAKAAEGRKAKQAKADER
YQCAVQGLQDRIQKTLTRAENRAHFYAKVAAERAQATLLMRVEKELRQKD
KEENVKRIQRKEEYEKSCLLARQEADTARYEEIKRERAYLLEQRKATAQE
TMIRKHRLREAMEEMKIKNRFWVEGVGGDGGEERRKGGKPHETSSVGGGR
GRGRERGSKDGGGGRPASAMV*

mRNA from alignment at scaffold_6:21454..23180+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3330 ID=mRNA_3330|Name=jgi.p|Nanoce1779_2|628789|organism=Nannochloropsis oceanica|type=mRNA|length=1727bp|location=Sequence derived from alignment at scaffold_6:21454..23180+ (Nannochloropsis oceanica)
ATGAAAATGCTGCCACCGGAAGCGCAGGACAAGATTTACGCTCATTACAA
GACACGACTTTTCGAAAAGGTGAACCTTATAAAAGAGCAACGCCGACAAA
TGATTATGAAGGCGCGGGGGGAGGAGGGGTACAATTTCTTGCTGCTTGAT
GATGATGATGATGAAGGCGGTACCAACACTGCTCAAGCGCATGGTGCTGG
CAGCCTCGATCCAACAGCTCTGTCTCGAACCCGAGCCTCTCCACGAAACA
TCCGTCCCCACGGCAAAGGCGGCGGGGAGGATGACAAGGAGCCACACGAT
ATGGAAGCCCGCGCCGCATATTTGAAGTCTGCCATGATGGAAATGGAGGT
ACGAAGGATCGAAGCTGTGAAAAAGCGCCAGGAAAAGGAGTTTTCAAGGA
TGGTGGAGGGTGAGAAACGGACTATTTTGTTGCAGCAGAAGCTGTTGGCG
GCATCAGAGGAGGAAATGGCCAGGAAGAAGGCACACGAGAAAGAAGTGGC
ATGGCATCGCAAAATTGAATTCCAAAAGAAGCAGGAACGGGACCGGGAGG
TGCAGCGACAAATGGAAGAGGAGCAGAAGCGTCGGAGGGAAATAGCTCGA
AAGGACGGGGCACTCAAGGACAAGTTGACGGCTGAGGCCCGGGCGGCAGA
GCGAATACGACGCCATAAAGCTGTCCTTCGCGAAGAAGAGCGCCGTGCCA
AGCTCGAGGTCTTGCGGCAGCGTACAGAAGAGATTCTAAAAGACCAGGAA
CGGCGAGGAGAGGCCCAACGCCGCGAGATTGAGGCGCGCGAGGCCAGAGT
CAAGGCCCAGGTGATGGCGAAGAAGGAAGCAAAAGCTAATGAGATCCAGA
CTGCACGGAACAAAGCTGAAAAACGAATTCAAGGTGCGTTGCTCAGAAAT
CATGCGATCCAAGAGGCCAAACGCAAAGCTTACCAAGCAAGAGCAGCCGA
GGCTGCTGCCCGCGCGGAGCAGAATCACGTGGAGCTGTTGGAGGCAGCGG
CCAAAGCGGCCGAGGGGCGCAAGGCCAAGCAAGCCAAGGCGGACGAGCGC
TATCAATGTGCTGTACAAGGACTGCAAGATCGTATACAGAAAACGTTGAC
TCGGGCAGAGAATCGCGCACATTTCTACGCTAAGGTGGCAGCAGAGCGAG
CACAAGCCACGCTGTTAATGCGAGTGGAGAAGGAGCTGAGGCAGAAAGAT
AAGGAGGAGAACGTCAAAAGGATACAGCGGAAGGAAGAGTATGAAAAATC
GTGTTTGTTGGCAAGGCAGGAGGCGGACACGGCGCGGTACGAGGAAATCA
AGCGAGAGAGGGCGTACTTATTAGAGCAACGAAAAGCGACTGCGCAGGAG
ACAATGATAAGGAAGCATCGTCTGCGAGAGGCCATGGAGGAAATGAAGAT
TAAAAATCGATTCTGGGTTGAGGGGGTGGGGGGAGACGGAGGAGAGGAAA
GACGAAAGGGTGGCAAGCCCCATGAGACAAGCTCGGTCGGAGGGGGAAGG
GGAAGAGGGAGAGAACGAGGAAGTAAGGACGGAGGTGGAGGCCGCCCTGC
GTCGGCCATGGTGTAAGACAAATTACTGAGGCAATGGCACGCTAAATCAG
GACGAGAAAAGTCAGTAAGGAACCACATCACTACATGTTCGCAGGGAAAA
TGGCGGCCAGGGGTGATGCAGTTGCACATGGCAGACCAAGAGATGCGCTG
AAAAGGGCGAAGAAAGGCAAGCAAGTG

Coding sequence (CDS) from alignment at scaffold_6:21454..23180+

>mRNA_3330 ID=mRNA_3330|Name=jgi.p|Nanoce1779_2|628789|organism=Nannochloropsis oceanica|type=CDS|length=1566bp|location=Sequence derived from alignment at scaffold_6:21454..23180+ (Nannochloropsis oceanica)
ATGAAAATGCTGCCACCGGAAGCGCAGGACAAGATTTACGCTCATTACAA
GACACGACTTTTCGAAAAGGTGAACCTTATAAAAGAGCAACGCCGACAAA
TGATTATGAAGGCGCGGGGGGAGGAGGGGTACAATTTCTTGCTGCTTGAT
GATGATGATGATGAAGGCGGTACCAACACTGCTCAAGCGCATGGTGCTGG
CAGCCTCGATCCAACAGCTCTGTCTCGAACCCGAGCCTCTCCACGAAACA
TCCGTCCCCACGGCAAAGGCGGCGGGGAGGATGACAAGGAGCCACACGAT
ATGGAAGCCCGCGCCGCATATTTGAAGTCTGCCATGATGGAAATGGAGGT
ACGAAGGATCGAAGCTGTGAAAAAGCGCCAGGAAAAGGAGTTTTCAAGGA
TGGTGGAGGGTGAGAAACGGACTATTTTGTTGCAGCAGAAGCTGTTGGCG
GCATCAGAGGAGGAAATGGCCAGGAAGAAGGCACACGAGAAAGAAGTGGC
ATGGCATCGCAAAATTGAATTCCAAAAGAAGCAGGAACGGGACCGGGAGG
TGCAGCGACAAATGGAAGAGGAGCAGAAGCGTCGGAGGGAAATAGCTCGA
AAGGACGGGGCACTCAAGGACAAGTTGACGGCTGAGGCCCGGGCGGCAGA
GCGAATACGACGCCATAAAGCTGTCCTTCGCGAAGAAGAGCGCCGTGCCA
AGCTCGAGGTCTTGCGGCAGCGTACAGAAGAGATTCTAAAAGACCAGGAA
CGGCGAGGAGAGGCCCAACGCCGCGAGATTGAGGCGCGCGAGGCCAGAGT
CAAGGCCCAGGTGATGGCGAAGAAGGAAGCAAAAGCTAATGAGATCCAGA
CTGCACGGAACAAAGCTGAAAAACGAATTCAAGGTGCGTTGCTCAGAAAT
CATGCGATCCAAGAGGCCAAACGCAAAGCTTACCAAGCAAGAGCAGCCGA
GGCTGCTGCCCGCGCGGAGCAGAATCACGTGGAGCTGTTGGAGGCAGCGG
CCAAAGCGGCCGAGGGGCGCAAGGCCAAGCAAGCCAAGGCGGACGAGCGC
TATCAATGTGCTGTACAAGGACTGCAAGATCGTATACAGAAAACGTTGAC
TCGGGCAGAGAATCGCGCACATTTCTACGCTAAGGTGGCAGCAGAGCGAG
CACAAGCCACGCTGTTAATGCGAGTGGAGAAGGAGCTGAGGCAGAAAGAT
AAGGAGGAGAACGTCAAAAGGATACAGCGGAAGGAAGAGTATGAAAAATC
GTGTTTGTTGGCAAGGCAGGAGGCGGACACGGCGCGGTACGAGGAAATCA
AGCGAGAGAGGGCGTACTTATTAGAGCAACGAAAAGCGACTGCGCAGGAG
ACAATGATAAGGAAGCATCGTCTGCGAGAGGCCATGGAGGAAATGAAGAT
TAAAAATCGATTCTGGGTTGAGGGGGTGGGGGGAGACGGAGGAGAGGAAA
GACGAAAGGGTGGCAAGCCCCATGAGACAAGCTCGGTCGGAGGGGGAAGG
GGAAGAGGGAGAGAACGAGGAAGTAAGGACGGAGGTGGAGGCCGCCCTGC
GTCGGCCATGGTGTAA

Synonyms

Publications