jgi.p|Nanoce1779_2|657801, mRNA_333 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|657801
Unique Name	mRNA_333
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1844
Alignment location	scaffold_3:823999..825842 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	657887
Track	FilteredModels2
ProteinId	657801

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:823999..825842 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|657801	gene_333	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|657801	mRNA_333-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_333	CDS_333	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:823999..825842+
coding sequence from alignment at scaffold_3:823999..825842+

mRNA sequence

>mRNA_333 ID=mRNA_333|Name=jgi.p|Nanoce1779_2|657801|organism=Nannochloropsis oceanica|type=mRNA|length=1844bp
TTTGCATGCGGCGAAAGCGACGAATTCTCATTTTTGTGATTTTCCCAACG
GACGGGAGAACTGGCTGAGCTCCCCTGCTCCACCACATCTCTCAAGCCAT
CTCACGCAAATAGCCTGCCCTCTCCCTCTACACAGAGGCAGTCCCTCGAC
CGCTAATTACAGACGGGACAGCCATGGCGGGATCCATGCGTGCGGCCCTG
TTCCTCTCCACGAGTGCCCGCTACAGCCGCGTCATCCGACCTCCCCCATC
ATCAGCCTCCACGCTTGCCCTCCTCCAACCCTCTAACGGCACTTATCAAA
GCGGGTCCGGTCGTCGGAGGCAAAATCTGATAAATCGAAAAGAGGCGCGA
AGGCTCTTTCGGACCACCCGGCGTACTGAGAGCCCAGTTCTCATCGGCAT
AGTTGTCTTGGTTGGCGCTACCCTTGCCCACTACTTCCTCCGAGCCGCCC
AACGCATCTCCAAAGCGGATGCCAAGAAGGAGAAGAGCGGCGGCAAAGCC
ACCGTGCACGACGACAACGATGATGGTGATGATGAGGACGATGATGACAC
GGCTGACAACAAAGCAGGGACTGGCGCAAGTAAGCGTAAATTTCCTGTGT
TGGGACTGGATATGGGGTCCCTGCAAGCGTGCGTGACGTGTGTAACGTCC
ACGGAGACGTCGCCCTTGGTGGTCGAAAATCACGAAGGCCGTCGCTCCAC
TCCTTCATTCATTGCATTTGAAGACAATCATTTGGTCGTAGGGCAATTGG
CCCGTCGAGCCCGATGGCGCGCACCGGCCAGTGTGGCATTCAACCTTCAG
AGGTTGCTGGGCGAAACGACTTACGACGACAAGCTCCGTCCCCTCTTTCC
GTTTCCCGTGGAAGCCAGCCTTACTTCCGACAAAAGTGAACCTCCCGTGA
CCATCTTATTGAATGGTGGGCGGTCCTTAACGCCCATTGAGGCAAGTGCT
CGTTTGTTGGAAGATCTGGTGGCGACGGCCGAGCACAAATTGCAGCACTC
TCCTGGCTTTGCTGTGCTGGCCATCCCTTCTTATTTTGGCGCGCAAGCAA
AAAGCTGGGCGTTGAGAGCAGTGGCGGATGGGACGGGGTTGGAGGTAGGG
GAGGAGGAGGGCGGGCATGGTGGGGGGGTGGAGGTGGTGGAGGACGCGGT
GGCTGCTTTGGTGTGCGCGCATTACTCAGGGGCGATTTCTCAGCAAGAGG
CTTTCTTGGGGAAGCCGTGGTTGGTGGTGGACGTGGGAGGATTGAATGCA
CAAGTCTCTATCGTGGCATTGGACCCGGAGCAGGGATTGGGGGTGAGGGG
AAACAGGACAACATGGGCCGTGGGGGGGGAGCAGGTGGACTGGGCGCTGG
TGCAGTGGTTGGTGGAGGACTTCAAGGCGAAGAACGAGGGCTTGGATCTC
GGGATGGATCGCATGGCGTTGGAACGGTTGTATGAAGCGGCCGAGGCGAC
GAAACAGGAGTTGAGCAGCAAGGTGAGTTCGAGCGTCAGATTGCCCTTCA
TCACGGCGGACCACCGGGGGCCGAAGCATTTAGATGCCACCGTCTCGAGA
GCGCTGATTGAGAAATTGGCCTCGCCCATCGTGGCACAGTTGGAGGTGCC
GTTTAGGGAGGTATTGAAGGAGGGAGGGGTGGAGGTCAGGGACCTGGAGG
GGGTGCTGTTGAGTGGGGGGAGTACACGCTTGCCGTTTGTAGGGGACTTT
GTTCGAGGGAGGTTGGTGGGAGGAGGGGGAGGAGGGGAGGGAAGGGGGGG
GGGAGGGACGAAGGTGGTGGTGCTTGAGGAGGTACCGCCAGAGGAGATGG
TGGCGGTGGGGGCGGGTTATTATGGGCGGGCGTTGATGGATTAG

protein sequence of jgi.p|Nanoce1779_2|657801

>mRNA_333-protein ID=mRNA_333-protein|Name=jgi.p|Nanoce1779_2|657801|organism=Nannochloropsis oceanica|type=polypeptide|length=557bp
MAGSMRAALFLSTSARYSRVIRPPPSSASTLALLQPSNGTYQSGSGRRRQ
NLINRKEARRLFRTTRRTESPVLIGIVVLVGATLAHYFLRAAQRISKADA
KKEKSGGKATVHDDNDDGDDEDDDDTADNKAGTGASKRKFPVLGLDMGSL
QACVTCVTSTETSPLVVENHEGRRSTPSFIAFEDNHLVVGQLARRARWRA
PASVAFNLQRLLGETTYDDKLRPLFPFPVEASLTSDKSEPPVTILLNGGR
SLTPIEASARLLEDLVATAEHKLQHSPGFAVLAIPSYFGAQAKSWALRAV
ADGTGLEVGEEEGGHGGGVEVVEDAVAALVCAHYSGAISQQEAFLGKPWL
VVDVGGLNAQVSIVALDPEQGLGVRGNRTTWAVGGEQVDWALVQWLVEDF
KAKNEGLDLGMDRMALERLYEAAEATKQELSSKVSSSVRLPFITADHRGP
KHLDATVSRALIEKLASPIVAQLEVPFREVLKEGGVEVRDLEGVLLSGGS
TRLPFVGDFVRGRLVGGGGGGEGRGGGGTKVVVLEEVPPEEMVAVGAGYY
GRALMD*

mRNA from alignment at scaffold_3:823999..825842+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_333 ID=mRNA_333|Name=jgi.p|Nanoce1779_2|657801|organism=Nannochloropsis oceanica|type=mRNA|length=1844bp|location=Sequence derived from alignment at scaffold_3:823999..825842+ (Nannochloropsis oceanica)
TTTGCATGCGGCGAAAGCGACGAATTCTCATTTTTGTGATTTTCCCAACG
GACGGGAGAACTGGCTGAGCTCCCCTGCTCCACCACATCTCTCAAGCCAT
CTCACGCAAATAGCCTGCCCTCTCCCTCTACACAGAGGCAGTCCCTCGAC
CGCTAATTACAGACGGGACAGCCATGGCGGGATCCATGCGTGCGGCCCTG
TTCCTCTCCACGAGTGCCCGCTACAGCCGCGTCATCCGACCTCCCCCATC
ATCAGCCTCCACGCTTGCCCTCCTCCAACCCTCTAACGGCACTTATCAAA
GCGGGTCCGGTCGTCGGAGGCAAAATCTGATAAATCGAAAAGAGGCGCGA
AGGCTCTTTCGGACCACCCGGCGTACTGAGAGCCCAGTTCTCATCGGCAT
AGTTGTCTTGGTTGGCGCTACCCTTGCCCACTACTTCCTCCGAGCCGCCC
AACGCATCTCCAAAGCGGATGCCAAGAAGGAGAAGAGCGGCGGCAAAGCC
ACCGTGCACGACGACAACGATGATGGTGATGATGAGGACGATGATGACAC
GGCTGACAACAAAGCAGGGACTGGCGCAAGTAAGCGTAAATTTCCTGTGT
TGGGACTGGATATGGGGTCCCTGCAAGCGTGCGTGACGTGTGTAACGTCC
ACGGAGACGTCGCCCTTGGTGGTCGAAAATCACGAAGGCCGTCGCTCCAC
TCCTTCATTCATTGCATTTGAAGACAATCATTTGGTCGTAGGGCAATTGG
CCCGTCGAGCCCGATGGCGCGCACCGGCCAGTGTGGCATTCAACCTTCAG
AGGTTGCTGGGCGAAACGACTTACGACGACAAGCTCCGTCCCCTCTTTCC
GTTTCCCGTGGAAGCCAGCCTTACTTCCGACAAAAGTGAACCTCCCGTGA
CCATCTTATTGAATGGTGGGCGGTCCTTAACGCCCATTGAGGCAAGTGCT
CGTTTGTTGGAAGATCTGGTGGCGACGGCCGAGCACAAATTGCAGCACTC
TCCTGGCTTTGCTGTGCTGGCCATCCCTTCTTATTTTGGCGCGCAAGCAA
AAAGCTGGGCGTTGAGAGCAGTGGCGGATGGGACGGGGTTGGAGGTAGGG
GAGGAGGAGGGCGGGCATGGTGGGGGGGTGGAGGTGGTGGAGGACGCGGT
GGCTGCTTTGGTGTGCGCGCATTACTCAGGGGCGATTTCTCAGCAAGAGG
CTTTCTTGGGGAAGCCGTGGTTGGTGGTGGACGTGGGAGGATTGAATGCA
CAAGTCTCTATCGTGGCATTGGACCCGGAGCAGGGATTGGGGGTGAGGGG
AAACAGGACAACATGGGCCGTGGGGGGGGAGCAGGTGGACTGGGCGCTGG
TGCAGTGGTTGGTGGAGGACTTCAAGGCGAAGAACGAGGGCTTGGATCTC
GGGATGGATCGCATGGCGTTGGAACGGTTGTATGAAGCGGCCGAGGCGAC
GAAACAGGAGTTGAGCAGCAAGGTGAGTTCGAGCGTCAGATTGCCCTTCA
TCACGGCGGACCACCGGGGGCCGAAGCATTTAGATGCCACCGTCTCGAGA
GCGCTGATTGAGAAATTGGCCTCGCCCATCGTGGCACAGTTGGAGGTGCC
GTTTAGGGAGGTATTGAAGGAGGGAGGGGTGGAGGTCAGGGACCTGGAGG
GGGTGCTGTTGAGTGGGGGGAGTACACGCTTGCCGTTTGTAGGGGACTTT
GTTCGAGGGAGGTTGGTGGGAGGAGGGGGAGGAGGGGAGGGAAGGGGGGG
GGGAGGGACGAAGGTGGTGGTGCTTGAGGAGGTACCGCCAGAGGAGATGG
TGGCGGTGGGGGCGGGTTATTATGGGCGGGCGTTGATGGATTAG

Coding sequence (CDS) from alignment at scaffold_3:823999..825842+

>mRNA_333 ID=mRNA_333|Name=jgi.p|Nanoce1779_2|657801|organism=Nannochloropsis oceanica|type=CDS|length=1671bp|location=Sequence derived from alignment at scaffold_3:823999..825842+ (Nannochloropsis oceanica)
ATGGCGGGATCCATGCGTGCGGCCCTGTTCCTCTCCACGAGTGCCCGCTA
CAGCCGCGTCATCCGACCTCCCCCATCATCAGCCTCCACGCTTGCCCTCC
TCCAACCCTCTAACGGCACTTATCAAAGCGGGTCCGGTCGTCGGAGGCAA
AATCTGATAAATCGAAAAGAGGCGCGAAGGCTCTTTCGGACCACCCGGCG
TACTGAGAGCCCAGTTCTCATCGGCATAGTTGTCTTGGTTGGCGCTACCC
TTGCCCACTACTTCCTCCGAGCCGCCCAACGCATCTCCAAAGCGGATGCC
AAGAAGGAGAAGAGCGGCGGCAAAGCCACCGTGCACGACGACAACGATGA
TGGTGATGATGAGGACGATGATGACACGGCTGACAACAAAGCAGGGACTG
GCGCAAGTAAGCGTAAATTTCCTGTGTTGGGACTGGATATGGGGTCCCTG
CAAGCGTGCGTGACGTGTGTAACGTCCACGGAGACGTCGCCCTTGGTGGT
CGAAAATCACGAAGGCCGTCGCTCCACTCCTTCATTCATTGCATTTGAAG
ACAATCATTTGGTCGTAGGGCAATTGGCCCGTCGAGCCCGATGGCGCGCA
CCGGCCAGTGTGGCATTCAACCTTCAGAGGTTGCTGGGCGAAACGACTTA
CGACGACAAGCTCCGTCCCCTCTTTCCGTTTCCCGTGGAAGCCAGCCTTA
CTTCCGACAAAAGTGAACCTCCCGTGACCATCTTATTGAATGGTGGGCGG
TCCTTAACGCCCATTGAGGCAAGTGCTCGTTTGTTGGAAGATCTGGTGGC
GACGGCCGAGCACAAATTGCAGCACTCTCCTGGCTTTGCTGTGCTGGCCA
TCCCTTCTTATTTTGGCGCGCAAGCAAAAAGCTGGGCGTTGAGAGCAGTG
GCGGATGGGACGGGGTTGGAGGTAGGGGAGGAGGAGGGCGGGCATGGTGG
GGGGGTGGAGGTGGTGGAGGACGCGGTGGCTGCTTTGGTGTGCGCGCATT
ACTCAGGGGCGATTTCTCAGCAAGAGGCTTTCTTGGGGAAGCCGTGGTTG
GTGGTGGACGTGGGAGGATTGAATGCACAAGTCTCTATCGTGGCATTGGA
CCCGGAGCAGGGATTGGGGGTGAGGGGAAACAGGACAACATGGGCCGTGG
GGGGGGAGCAGGTGGACTGGGCGCTGGTGCAGTGGTTGGTGGAGGACTTC
AAGGCGAAGAACGAGGGCTTGGATCTCGGGATGGATCGCATGGCGTTGGA
ACGGTTGTATGAAGCGGCCGAGGCGACGAAACAGGAGTTGAGCAGCAAGG
TGAGTTCGAGCGTCAGATTGCCCTTCATCACGGCGGACCACCGGGGGCCG
AAGCATTTAGATGCCACCGTCTCGAGAGCGCTGATTGAGAAATTGGCCTC
GCCCATCGTGGCACAGTTGGAGGTGCCGTTTAGGGAGGTATTGAAGGAGG
GAGGGGTGGAGGTCAGGGACCTGGAGGGGGTGCTGTTGAGTGGGGGGAGT
ACACGCTTGCCGTTTGTAGGGGACTTTGTTCGAGGGAGGTTGGTGGGAGG
AGGGGGAGGAGGGGAGGGAAGGGGGGGGGGAGGGACGAAGGTGGTGGTGC
TTGAGGAGGTACCGCCAGAGGAGATGGTGGCGGTGGGGGCGGGTTATTAT
GGGCGGGCGTTGATGGATTAG

Synonyms

Publications