|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 581828 |
| Track | FilteredModels2 |
| ProteinId | 581742 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:7828..11139 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3326 ID=mRNA_3326|Name=jgi.p|Nanoce1779_2|581742|organism=Nannochloropsis oceanica|type=mRNA|length=2166bp
ACAGATCTTGCTACGCTCCGTTTGCTCTTCCGGTTTCACACCTCCTCTCA
CCCCGTCGAGTTCGCTGAGCGGAGATCGAAAGTAAGCGACCTCCTGCTGA
CTTTTCTCACTGCTTTGCCCTCTGCCCACGACAAGTACTGGGTCTGTCAC
GTACCACTCTGTCGAACCAAAGACTCTCGACCACCGTGCCGATACCAGTC
CACCGCTCCAGTCGGAAGCCATGCATAACAACGACGAGGACGAAGGAGGC
TGGAGCAAGGCACCCACACGTGGAGGAGCACAACACAAGTCAAAGCCGCA
GCAGAATCAGCCGAAGAGACCTAATGCCTCCCGTGGCCCATCGTTTGCTC
CTTCGCTCAAGCATTACAATTCCTCCTCCTCCTCCTCTTCCCATGCGACA
TCTTCCCCGTCCTTCTCCTCACCCAACCCGCACTATCCCTCCTCGCGCGG
CCGCGCCCAGCAATCCAAGGCGAAGACAAATGTAAACGCCGCATCTGCCT
CCCGCGTCCCCCCCGCCGCTCCCACCAACTCTCAGGGGGAAAAGATCTTT
ATTCCATCCTGCCGTGCCTCGAGAATAAAGCAGCCGGCCCGGCGCAAGGA
CTGGATGCGAGGTCTTAACGGCGACGACTCCTCGGACGACTCCCTGATCC
ACTCCTCCTCAGATGAGGACGAGGACCGCGACCTGGTCCATCTAACGGAG
CAGCTCTGCATGCCGTAAGAAGCAGCGAGGAGCAGGGACAGCGGGAGGGA
GGGTGGGAGGGAGGGGAAAGGCGAGAGAGGTCGAGTCAGTCTTGTGGCTC
AGTTTCTGGCCACCTGATCTTTTCTTGCCATCCCCTTTTTCTCCCTTCCC
ACTTCCCTTCCTCCCTATCTCCCTGCTTTTGCCTCCTAGGGTGATCGATG
TGGACGGGAAGCAGGATGTCAATCCCTGCTTCGCCGACAACCTCGACCAA
ATCATCAAGCTCAACGTAGGAAATAAATCGCCGTCTTCCTCCCTCCTTCC
CTTCCCAGCGGTCGCTTCTGTCAGGGTGTCGAGTAACAAACTCTCCCTCA
CTCCCTCCCTTCCTCCCTCTCTCAATTTCCTCCCTCCCTCACTCTCTCTC
TCTAGATCGCCTGTCCCCTCTCCCGCACGGGCCTGACTGGCCTCGTGAAC
TCAGGGATTATGTGCGGGGAGGATCGGGACGATATTGAGGGCGACGCCGA
GCTTTGTAAGGGCAACACGCAGGGCTTCAACTCGTGGGAGGCCATGGCTG
CCCATGCCCGGTCCTTCCAAGACATCTATCACACCTGCATCTGCCGTTAC
TTGGAGGTAAAAAAGGGCGTCGCCCCCCTCCGGCGCCAGGAGAACGCCAC
GTCTGCCATCACCCCTTCCACCGCCGCTCCTACTGATCTGGAGGCCCTCT
ATCGGTCGTCGTCCTTCCCGACGCGGCTCAAGCTCGCTAACCCGCCTTTG
GTAGAGCTGACAGGCCTTAATCAGAGGCAGTGCAATAAGGCGGAGATCTT
GCAGTACATGGTCAACGCCCTTCTCGAGATTCAAGACGCCTCCGACGGGG
GCTGCCTGGTCCTCTCGATTCACCCTAAGTTTGGCAACGGGGGCAAGTTT
ATGAAGCGGGCCGCTGTCGAATTTCGCACCTCCAACAAGGGCAGGGCTGC
CGCTCACTGCATCCTCACACGCCTCTCCAACAGCAAGGTATGGACCCCCT
CCCTTCCCTCCCTCATTCCCCTCCTCATTCCCTTTATTTCGCAAGATACC
AGCTTAACCTCCGTCTTTATATTCTTCCAACCCTTCCTCCTTCCCTTTCT
CCCCCCCTTCCTCCTTGAGATTCTCCACCCCATCCATGACGCGGATGCCA
TGCGTGCCAGCTACCCCAGGCTTTACAAGAAGCTCCATGACGACTAAAGG
CTTGGAGGGGGAGGGAACAAAAAAAACCAGAAAGGGTAATGCCTTGACAC
ATGAATGTATAGCGATGCATATGCAGTATTCCTAGGCCGGAAACCTGCAA
TGGTCGAGGATTTTGTTGTCCATGTCTAAAAGCGAAACCTGTTTGTTTGA
AACACAGCAGAATTCTTAATCAATATTCAGCAGCCGAACACATACACAAA
AGAAAACCACAAATCTATGCACGCTTTCCGAAACGTAGGGAAACATGAAG
AAAAAGACAGCAGTCT back to topprotein sequence of jgi.p|Nanoce1779_2|581742 >mRNA_3326-protein ID=mRNA_3326-protein|Name=jgi.p|Nanoce1779_2|581742|organism=Nannochloropsis oceanica|type=polypeptide|length=246bp
MCGEDRDDIEGDAELCKGNTQGFNSWEAMAAHARSFQDIYHTCICRYLEV
KKGVAPLRRQENATSAITPSTAAPTDLEALYRSSSFPTRLKLANPPLVEL
TGLNQRQCNKAEILQYMVNALLEIQDASDGGCLVLSIHPKFGNGGKFMKR
AAVEFRTSNKGRAAAHCILTRLSNSKVWTPSLPSLIPLLIPFISQDTSLT
SVFIFFQPFLLPFLPPFLLEILHPIHDADAMRASYPRLYKKLHDD* back to topmRNA from alignment at scaffold_6:7828..11139+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3326 ID=mRNA_3326|Name=jgi.p|Nanoce1779_2|581742|organism=Nannochloropsis oceanica|type=mRNA|length=3312bp|location=Sequence derived from alignment at scaffold_6:7828..11139+ (Nannochloropsis oceanica)
ACAGATCTTGCTACGCTCCGTTTGCTCTTCCGGTTTCACACCTCCTCTCA
CCCCGTCGAGTTCGCTGAGCGGAGATCGAAAGTAAGCGACCTCCTGCTGA
CTTTTCTCACTGCTTTGCCCTCTGCCCACGACAAGTACTGGGTCTGTCAC
GTACCACTCTGTCGAACCAAAGACTCTCGACCACCGTGCCGATACCAGTC
CACCGCTCCAGTCGGAAGCCATGCATAACAACGACGAGGACGAAGGAGGC
TGGAGCAAGGCACCCACACGTGGAGGAGCACAACACAAGTCAAAGCCGCA
GCAGAATCAGCCGAAGAGACCTAATGCCTCCCGTGGCCCATCGTTTGCTC
CTTCGCTCAAGCATTACAATTCCTCCTCCTCCTCCTCTTCCCATGCGACA
TCTTCCCCGTCCTTCTCCTCACCCAACCCGCACTATCCCTCCTCGCGCGG
CCGCGCCCAGCAATCCAAGGCGAAGACAAATGTAAACGCCGCATCTGCCT
CCCGCGTCCCCCCCGCCGCTCCCACCAACTCTCAGGGGGAAAAGATCTTT
ATTCCATCCTGCCGTGCCTCGAGAATAAAGCAGCCGGCCCGGCGCAAGGA
CTGGATGCGAGGTCTTAACGTACGGAGCGAGGGAGGGAGGGAGGGCGGCA
GACGGGGGAAGGAGGGAGGGAACTCATTTTTAAGTTAGGGAGGATACTCT
TCTGGCCCCTTTGTCTGTACAAGTTCCAAGTGACTAATGTGTCGTTAACA
AGCTAGCGCACCTTCCTCCCTCCCTCCCTCCTCCCTAGGGCGACGACTCC
TCGGACGACTCCCTGATCCACTCCTCCTCAGATGAGGACGAGGACCGCGA
CCTGGTCCATCTAACGGAGCAGCTCTGCATGCCGTAAGAAGCAGCGAGGA
GCAGGGACAGCGGGAGGGAGGGTGGGAGGGAGGGGAAAGGCGAGAGAGGT
CGAGTCAGTCTTGTGGCTCAGTTTCTGGCCACCTGATCTTTTCTTGCCAT
CCCCTTTTTCTCCCTTCCCACTTCCCTTCCTCCCTATCTCCCTGCTTTTG
CCTCCTAGGGTGATCGATGTGGACGGGAAGCAGGATGTCAATCCCTGCTT
CGCCGACAACCTCGACCAAATCATCAAGCTCAACGTAGGAAATAAATCGC
CGTCTTCCTCCCTCCTTCCCTTCCCAGCGGTCGCTTCTGTCAGGGTGTCG
AGTAACAAACTCTCCCTCACTCCCTCCCTTCCTCCCTCTCTCAATTTCCT
CCCTCCCTCACTCTCTCTCTCTAGATCGCCTGTCCCCTCTCCCGCACGGG
CCTGACTGGCCTCGTGAACTCAGGGATTATGTGCGGGGAGGATCGGGACG
ATATTGAGGGCGACGCCGAGGTACTTGATGATAGCCCGCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCGCCCTCCTTCCTTTTTCGAAGCCCTTG
TTGTGGAAGCAAGACGTCCTTTGACTAACTCGTCATTCCTTCTACCCTTC
CTTCCTTCCTCCCTCTCTCCCTCACTCACTCCTTCTCTTCCTTCCTTCCT
CCCTCCCTCCCTCCCTCCCTCCCTTCCTTCCTTCCTTTCTCCCTCCCTCC
CTCCCTCCCTTCCTTCCTTCCTTTCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCTTCGCCCAGCTTTGTAAGGGCAACACGCAGGGCTTCAACTCGTG
GGAGGCCATGGCTGCCCATGCCCGGTCCTTCCAAGGTGAGCAAGTGCCGG
GGAGGGAGGGAGGGAGGGAGGGGGGGCGGGAAGGAATGAAAAGAGCGCTT
GGTCTTGTCTTGCCCTTGTGATTCATTGAGACCTTTCCCTCTCCTTTTCT
CCTTCCCTCGCTTCCTTTCTCTCTCCGTGTTAAAAAAATCTGCCGCACGT
GCACCCGCTGCTGTCTGACTGCAAACAATCTGACTGACTCCTTTCTTCTT
TCCATCCCTCCCTCCCTCGCTTCCCCTCTCCATTCCTCCTCGTTCTATTC
TTCTAGACATCTATCACACCTGCATCTGCCGTTACTTGGAGGTAAAAAAG
GGCGTCGCCCCCCTCCGGCGCCAGGAGAACGGTAACTGTGCGAGGGAGGC
TGAGAGGGGAGGGAGGGAGAGGGAGTATGGAGTTATGTTGATGTGAATGA
TGTTTGAAACCCTGCACTCTCCTCAGTCTCTCACTTATTCAGTCACAGCA
CCTTATCTGACCCTCCCCCCCTCTCTCGCGTCCCATCCTGCCCCCACATT
AGCCACGTCTGCCATCACCCCTTCCACCGCCGCTCCTACTGATCTGGAGG
CCCTCTATCGGTCGTCGTCCTTCCCGACGCGGCTCAAGCTCGCTAACCCG
CCTTTGGTAGAGCTGACAGGCCTTAATCAGAGGCAGTGCAATAAGGTGGG
CAGGGAACGTGGGCGAGAGAGACGGCTGAGTGCCAGAGGCCTAACTTTGA
CAGAGAGAGGGTTCGCGCCTTTTCTTCTAATCTACCCAACCCCCTCCCGG
TGCGATACAATCCACAGGCGGAGATCTTGCAGTACATGGTCAACGCCCTT
CTCGAGATTCAAGACGCCTCCGACGGGGGCTGCCTGGTCCTCTCGGTATG
GATTCCTTGTTCCTCCCTCCCGCCTTCCCTTCCTCCCTCCCCTGATTAAT
TCCTCCCTGCTTTTTGCCCACCCACCCTTCCTTCCTCCTTTTCTACCTCC
CTCCCTCCCTCAGATTCACCCTAAGTTTGGCAACGGGGGCAAGTTTATGA
AGCGGGCCGCTGTCGAATTTCGCACCTCCAACAAGGGCAGGGCTGCCGCT
CACTGCATCCTCACACGCCTCTCCAACAGCAAGGTATGGACCCCCTCCCT
TCCCTCCCTCATTCCCCTCCTCATTCCCTTTATTTCGCAAGATACCAGCT
TAACCTCCGTCTTTATATTCTTCCAACCCTTCCTCCTTCCCTTTCTCCCC
CCCTTCCTCCTTGAGATTCTCCACCCCATCCATGACGCGGATGCCATGCG
TGCCAGCTACCCCAGGCTTTACAAGAAGCTCCATGACGACTAAAGGCTTG
GAGGGGGAGGGAACAAAAAAAACCAGAAAGGGTAATGCCTTGACACATGA
ATGTATAGCGATGCATATGCAGTATTCCTAGGCCGGAAACCTGCAATGGT
CGAGGATTTTGTTGTCCATGTCTAAAAGCGAAACCTGTTTGTTTGAAACA
CAGCAGAATTCTTAATCAATATTCAGCAGCCGAACACATACACAAAAGAA
AACCACAAATCTATGCACGCTTTCCGAAACGTAGGGAAACATGAAGAAAA
AGACAGCAGTCT back to topCoding sequence (CDS) from alignment at scaffold_6:7828..11139+ >mRNA_3326 ID=mRNA_3326|Name=jgi.p|Nanoce1779_2|581742|organism=Nannochloropsis oceanica|type=CDS|length=4428bp|location=Sequence derived from alignment at scaffold_6:7828..11139+ (Nannochloropsis oceanica)
ATGTGCGGGGAGGATCGGGACGATATTGAGGGCGACGCCGAGCTTTGTAA
GGGCAACACGCAGGGCTTCAACTCGTGGGAGGCCATGGCTGCCCATGCCC
GGTCCTTCCAAGACATCTATCACACCTGCATCTGCCGTTACTTGGAGGTA
AAAAAGGGCGTCGCCCCCCTCCGGCGCCAGGAGAACGCCACGTCTGCCAT
CACCCCTTCCACCGCCGCTCCTACTGATCTGGAGGCCCTCTATCGGTCGT
CGTCCTTCCCGACGCGGCTCAAGCTCGCTAACCCGCCTTTGGTAGAGCTG
ACAGGCCTTAATCAGAGGCAGTGCAATAAGGCGGAGATCTTGCAGTACAT
GGTCAACGCCCTTCTCGAGATTCAAGACGCCTCCGACGGGGGCTGCCTGG
TCCTCTCGATTCACCCTAAGTTTGGCAACGGGGGCAAGTTTATGAAGCGG
GCCGCTGTCGAATTTCGCACCTCCAACAAGGGCAGGGCTGCCGCTCACTG
CATCCTCACACGCCTCTCCAACAGCAAGGTATGGACCCCCTCCCTTCCCT
CCCTCATTCCCCTCCTCATTCCCTTTATTTCGCAAGATACCAGCTTAACC
TCCGTCTTTATATTCTTCCAACCCTTCCTCCTTCCCTTTCTCCCCCCCTT
CCTCCTTGAGATTCTCCACCCCATCCATGACGCGGATGCCATGCGTGCCA
GCTACCCCAGGCTTTACAAGAAGCTCCATGACGACTAAATGTGCGGGGAG
GATCGGGACGATATTGAGGGCGACGCCGAGCTTTGTAAGGGCAACACGCA
GGGCTTCAACTCGTGGGAGGCCATGGCTGCCCATGCCCGGTCCTTCCAAG
ACATCTATCACACCTGCATCTGCCGTTACTTGGAGGTAAAAAAGGGCGTC
GCCCCCCTCCGGCGCCAGGAGAACGCCACGTCTGCCATCACCCCTTCCAC
CGCCGCTCCTACTGATCTGGAGGCCCTCTATCGGTCGTCGTCCTTCCCGA
CGCGGCTCAAGCTCGCTAACCCGCCTTTGGTAGAGCTGACAGGCCTTAAT
CAGAGGCAGTGCAATAAGGCGGAGATCTTGCAGTACATGGTCAACGCCCT
TCTCGAGATTCAAGACGCCTCCGACGGGGGCTGCCTGGTCCTCTCGATTC
ACCCTAAGTTTGGCAACGGGGGCAAGTTTATGAAGCGGGCCGCTGTCGAA
TTTCGCACCTCCAACAAGGGCAGGGCTGCCGCTCACTGCATCCTCACACG
CCTCTCCAACAGCAAGGTATGGACCCCCTCCCTTCCCTCCCTCATTCCCC
TCCTCATTCCCTTTATTTCGCAAGATACCAGCTTAACCTCCGTCTTTATA
TTCTTCCAACCCTTCCTCCTTCCCTTTCTCCCCCCCTTCCTCCTTGAGAT
TCTCCACCCCATCCATGACGCGGATGCCATGCGTGCCAGCTACCCCAGGC
TTTACAAGAAGCTCCATGACGACTAAATGTGCGGGGAGGATCGGGACGAT
ATTGAGGGCGACGCCGAGCTTTGTAAGGGCAACACGCAGGGCTTCAACTC
GTGGGAGGCCATGGCTGCCCATGCCCGGTCCTTCCAAGACATCTATCACA
CCTGCATCTGCCGTTACTTGGAGGTAAAAAAGGGCGTCGCCCCCCTCCGG
CGCCAGGAGAACGCCACGTCTGCCATCACCCCTTCCACCGCCGCTCCTAC
TGATCTGGAGGCCCTCTATCGGTCGTCGTCCTTCCCGACGCGGCTCAAGC
TCGCTAACCCGCCTTTGGTAGAGCTGACAGGCCTTAATCAGAGGCAGTGC
AATAAGGCGGAGATCTTGCAGTACATGGTCAACGCCCTTCTCGAGATTCA
AGACGCCTCCGACGGGGGCTGCCTGGTCCTCTCGATTCACCCTAAGTTTG
GCAACGGGGGCAAGTTTATGAAGCGGGCCGCTGTCGAATTTCGCACCTCC
AACAAGGGCAGGGCTGCCGCTCACTGCATCCTCACACGCCTCTCCAACAG
CAAGGTATGGACCCCCTCCCTTCCCTCCCTCATTCCCCTCCTCATTCCCT
TTATTTCGCAAGATACCAGCTTAACCTCCGTCTTTATATTCTTCCAACCC
TTCCTCCTTCCCTTTCTCCCCCCCTTCCTCCTTGAGATTCTCCACCCCAT
CCATGACGCGGATGCCATGCGTGCCAGCTACCCCAGGCTTTACAAGAAGC
TCCATGACGACTAAATGTGCGGGGAGGATCGGGACGATATTGAGGGCGAC
GCCGAGCTTTGTAAGGGCAACACGCAGGGCTTCAACTCGTGGGAGGCCAT
GGCTGCCCATGCCCGGTCCTTCCAAGACATCTATCACACCTGCATCTGCC
GTTACTTGGAGGTAAAAAAGGGCGTCGCCCCCCTCCGGCGCCAGGAGAAC
GCCACGTCTGCCATCACCCCTTCCACCGCCGCTCCTACTGATCTGGAGGC
CCTCTATCGGTCGTCGTCCTTCCCGACGCGGCTCAAGCTCGCTAACCCGC
CTTTGGTAGAGCTGACAGGCCTTAATCAGAGGCAGTGCAATAAGGCGGAG
ATCTTGCAGTACATGGTCAACGCCCTTCTCGAGATTCAAGACGCCTCCGA
CGGGGGCTGCCTGGTCCTCTCGATTCACCCTAAGTTTGGCAACGGGGGCA
AGTTTATGAAGCGGGCCGCTGTCGAATTTCGCACCTCCAACAAGGGCAGG
GCTGCCGCTCACTGCATCCTCACACGCCTCTCCAACAGCAAGGTATGGAC
CCCCTCCCTTCCCTCCCTCATTCCCCTCCTCATTCCCTTTATTTCGCAAG
ATACCAGCTTAACCTCCGTCTTTATATTCTTCCAACCCTTCCTCCTTCCC
TTTCTCCCCCCCTTCCTCCTTGAGATTCTCCACCCCATCCATGACGCGGA
TGCCATGCGTGCCAGCTACCCCAGGCTTTACAAGAAGCTCCATGACGACT
AAATGTGCGGGGAGGATCGGGACGATATTGAGGGCGACGCCGAGCTTTGT
AAGGGCAACACGCAGGGCTTCAACTCGTGGGAGGCCATGGCTGCCCATGC
CCGGTCCTTCCAAGACATCTATCACACCTGCATCTGCCGTTACTTGGAGG
TAAAAAAGGGCGTCGCCCCCCTCCGGCGCCAGGAGAACGCCACGTCTGCC
ATCACCCCTTCCACCGCCGCTCCTACTGATCTGGAGGCCCTCTATCGGTC
GTCGTCCTTCCCGACGCGGCTCAAGCTCGCTAACCCGCCTTTGGTAGAGC
TGACAGGCCTTAATCAGAGGCAGTGCAATAAGGCGGAGATCTTGCAGTAC
ATGGTCAACGCCCTTCTCGAGATTCAAGACGCCTCCGACGGGGGCTGCCT
GGTCCTCTCGATTCACCCTAAGTTTGGCAACGGGGGCAAGTTTATGAAGC
GGGCCGCTGTCGAATTTCGCACCTCCAACAAGGGCAGGGCTGCCGCTCAC
TGCATCCTCACACGCCTCTCCAACAGCAAGGTATGGACCCCCTCCCTTCC
CTCCCTCATTCCCCTCCTCATTCCCTTTATTTCGCAAGATACCAGCTTAA
CCTCCGTCTTTATATTCTTCCAACCCTTCCTCCTTCCCTTTCTCCCCCCC
TTCCTCCTTGAGATTCTCCACCCCATCCATGACGCGGATGCCATGCGTGC
CAGCTACCCCAGGCTTTACAAGAAGCTCCATGACGACTAAATGTGCGGGG
AGGATCGGGACGATATTGAGGGCGACGCCGAGCTTTGTAAGGGCAACACG
CAGGGCTTCAACTCGTGGGAGGCCATGGCTGCCCATGCCCGGTCCTTCCA
AGACATCTATCACACCTGCATCTGCCGTTACTTGGAGGTAAAAAAGGGCG
TCGCCCCCCTCCGGCGCCAGGAGAACGCCACGTCTGCCATCACCCCTTCC
ACCGCCGCTCCTACTGATCTGGAGGCCCTCTATCGGTCGTCGTCCTTCCC
GACGCGGCTCAAGCTCGCTAACCCGCCTTTGGTAGAGCTGACAGGCCTTA
ATCAGAGGCAGTGCAATAAGGCGGAGATCTTGCAGTACATGGTCAACGCC
CTTCTCGAGATTCAAGACGCCTCCGACGGGGGCTGCCTGGTCCTCTCGAT
TCACCCTAAGTTTGGCAACGGGGGCAAGTTTATGAAGCGGGCCGCTGTCG
AATTTCGCACCTCCAACAAGGGCAGGGCTGCCGCTCACTGCATCCTCACA
CGCCTCTCCAACAGCAAGGTATGGACCCCCTCCCTTCCCTCCCTCATTCC
CCTCCTCATTCCCTTTATTTCGCAAGATACCAGCTTAACCTCCGTCTTTA
TATTCTTCCAACCCTTCCTCCTTCCCTTTCTCCCCCCCTTCCTCCTTGAG
ATTCTCCACCCCATCCATGACGCGGATGCCATGCGTGCCAGCTACCCCAG
GCTTTACAAGAAGCTCCATGACGACTAA back to top
|