jgi.p|Nanoce1779_2|664778, mRNA_3323 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|664778
Unique NamemRNA_3323
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length591
Alignment locationscaffold_7:1209026..1209616 -

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Properties
Property NameValue
TranscriptId664864
TrackFilteredModels2
ProteinId664778
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:1209026..1209616 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|664778gene_3323Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3323CDS_3323Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|664778mRNA_3323-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3323 ID=mRNA_3323|Name=jgi.p|Nanoce1779_2|664778|organism=Nannochloropsis oceanica|type=mRNA|length=591bp
TTCGGCGGAGGCAGCCTCCTCCCCGCTCCTGTGCACTCAGACCGCCTGGG
TCCCCTAATAGCACTCGTCACAGGCCTTACCTCTGCCACGCTCTACGCCC
CTCCCCTCTCCTCCCTCTCCTCCCTCCCGTCCTCACCCTCGGCCTCCCAT
GTCCTCATCCCCGACGTCCAGCGGCTCCTCGAGCTCTTCCACTGGCTGGC
CTCCTCCCCTGCTAAGATGAGGAGGGAAGGAGCGAAGGAGCAAGGGCGGG
AGGGAGGAGGGGCGATGGAAGCCGTCCTTCTGAAAGAGATCAAGGAGAGC
GCGGGGCTGCTTCGAAGATTCCTCCTTTCTCCCTCGCGCAATGATAAGGC
GAAAGAGGGTCTGGCACACTGGCTGCTGCTTCGCTTGGGGACGGAAGGCG
GATGGATCGATGACATCTTCTTGAGGCCTTCCTCCCTCCCTTCCTCGTCC
TCCTCCACGCCGTTGCAGCAGGGTTTGGTGGAGCTATGGATGGGGGTGGC
GGAAGCGGCGCTTGATCGTGTGACGTCACAATCGCCTTCTTCTCCTCAGG
TGGAGGAAGCGGTTCAGAGCTTGGGAGCGGTGCTCTTTTGA
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protein sequence of jgi.p|Nanoce1779_2|664778

>mRNA_3323-protein ID=mRNA_3323-protein|Name=jgi.p|Nanoce1779_2|664778|organism=Nannochloropsis oceanica|type=polypeptide|length=197bp
FGGGSLLPAPVHSDRLGPLIALVTGLTSATLYAPPLSSLSSLPSSPSASH
VLIPDVQRLLELFHWLASSPAKMRREGAKEQGREGGGAMEAVLLKEIKES
AGLLRRFLLSPSRNDKAKEGLAHWLLLRLGTEGGWIDDIFLRPSSLPSSS
SSTPLQQGLVELWMGVAEAALDRVTSQSPSSPQVEEAVQSLGAVLF*
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mRNA from alignment at scaffold_7:1209026..1209616-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3323 ID=mRNA_3323|Name=jgi.p|Nanoce1779_2|664778|organism=Nannochloropsis oceanica|type=mRNA|length=591bp|location=Sequence derived from alignment at scaffold_7:1209026..1209616- (Nannochloropsis oceanica)
TTCGGCGGAGGCAGCCTCCTCCCCGCTCCTGTGCACTCAGACCGCCTGGG
TCCCCTAATAGCACTCGTCACAGGCCTTACCTCTGCCACGCTCTACGCCC
CTCCCCTCTCCTCCCTCTCCTCCCTCCCGTCCTCACCCTCGGCCTCCCAT
GTCCTCATCCCCGACGTCCAGCGGCTCCTCGAGCTCTTCCACTGGCTGGC
CTCCTCCCCTGCTAAGATGAGGAGGGAAGGAGCGAAGGAGCAAGGGCGGG
AGGGAGGAGGGGCGATGGAAGCCGTCCTTCTGAAAGAGATCAAGGAGAGC
GCGGGGCTGCTTCGAAGATTCCTCCTTTCTCCCTCGCGCAATGATAAGGC
GAAAGAGGGTCTGGCACACTGGCTGCTGCTTCGCTTGGGGACGGAAGGCG
GATGGATCGATGACATCTTCTTGAGGCCTTCCTCCCTCCCTTCCTCGTCC
TCCTCCACGCCGTTGCAGCAGGGTTTGGTGGAGCTATGGATGGGGGTGGC
GGAAGCGGCGCTTGATCGTGTGACGTCACAATCGCCTTCTTCTCCTCAGG
TGGAGGAAGCGGTTCAGAGCTTGGGAGCGGTGCTCTTTTGA
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Coding sequence (CDS) from alignment at scaffold_7:1209026..1209616-

>mRNA_3323 ID=mRNA_3323|Name=jgi.p|Nanoce1779_2|664778|organism=Nannochloropsis oceanica|type=CDS|length=591bp|location=Sequence derived from alignment at scaffold_7:1209026..1209616- (Nannochloropsis oceanica)
TTCGGCGGAGGCAGCCTCCTCCCCGCTCCTGTGCACTCAGACCGCCTGGG
TCCCCTAATAGCACTCGTCACAGGCCTTACCTCTGCCACGCTCTACGCCC
CTCCCCTCTCCTCCCTCTCCTCCCTCCCGTCCTCACCCTCGGCCTCCCAT
GTCCTCATCCCCGACGTCCAGCGGCTCCTCGAGCTCTTCCACTGGCTGGC
CTCCTCCCCTGCTAAGATGAGGAGGGAAGGAGCGAAGGAGCAAGGGCGGG
AGGGAGGAGGGGCGATGGAAGCCGTCCTTCTGAAAGAGATCAAGGAGAGC
GCGGGGCTGCTTCGAAGATTCCTCCTTTCTCCCTCGCGCAATGATAAGGC
GAAAGAGGGTCTGGCACACTGGCTGCTGCTTCGCTTGGGGACGGAAGGCG
GATGGATCGATGACATCTTCTTGAGGCCTTCCTCCCTCCCTTCCTCGTCC
TCCTCCACGCCGTTGCAGCAGGGTTTGGTGGAGCTATGGATGGGGGTGGC
GGAAGCGGCGCTTGATCGTGTGACGTCACAATCGCCTTCTTCTCCTCAGG
TGGAGGAAGCGGTTCAGAGCTTGGGAGCGGTGCTCTTTTGA
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Synonyms
Publications