jgi.p|Nanoce1779_2|585340, mRNA_3321 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|585340
Unique Name	mRNA_3321
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1303
Alignment location	scaffold_7:1203139..1204709 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	585426
Track	FilteredModels2
ProteinId	585340

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:1203139..1204709 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585340	gene_3321	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585340	mRNA_3321-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3321	CDS_3321	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:1203139..1204709+
coding sequence from alignment at scaffold_7:1203139..1204709+

mRNA sequence

>mRNA_3321 ID=mRNA_3321|Name=jgi.p|Nanoce1779_2|585340|organism=Nannochloropsis oceanica|type=mRNA|length=1303bp
AGAGACTGCAAACCGCCAAGAACGGGGATAAGGCGCGAGCCGTCTCGTCG
GCATCATCTCAGTCACAGCACCACCCACGGCCAGGCGAAAACGTCCTCGC
CTGTAGCGTTCAATGCTCTCCGCGACTTACTGCTGTTGTGTAATGCTCAC
CATCAGCGTTGCTGCTCGGGCCTCCTTGTCCACCAACACCATGAGACGAA
CACTCCTTCTTCGTCCGTCGTCCCTTGCCACTGCCGCCTTTACAACTACC
ACCACTACCACCACCACCAACCCCACGATAAGGCGGCGTCGTCTCCTTCG
CCGTCGGGCCGTCAACCCCGAAGCAACCATGGCTGGTACTGTCAAGTTGT
ATGATCGACATGTCTTCGTCTTGGATCCCGTGCGTGGCCACGAGCTCTGG
CCGACGCACGTGGAAGAGTCGTCTTTCTTGCTGATCGCCGACTACAAGAA
AGCACAAAAAGCGCTCACGGCGGCGGCCGGCGCCGCGGGGACGGTTGGGA
AAATGTTCACGCTTAAATTCACCGTCGCCGAGGCCTTGGGCCATGCGTTG
GCCGCCCCCAGTGATGAGGAAAATCCGGCAATAACCTTCAAAGACCATGG
CCTGCACACAGTGCTCCTTTTCTCGCCCACGGCCCCCTCCCTCGCCATCC
GCGGTCTCACGAAAGCTGACATTCCAACCCTGGTCAAGCTCCTCGTCACT
AAGGAGAACTACTCAGCCGCCCTTCCTTCAGCCCTTCCTTCGCAGGTCAT
TATCCAACCTCTACCCGGCAAGGATCTATTTGTTTGCGCGCATGCCTCGC
GGGACATTCGGTGCAAGACCTGTGGGCCACGGCTGGTGGGGTGGTTGAAA
GAAGAGGCTATCAAAGCGGCGAAATCGGGGTCTGGAGAAGACGAAGTAAG
GATCTGGCCATCGTCGCATGTGGGAGGACACATGCACGCGGGAAATGTCT
TGGTTTTCCCCAGCGGGGATTGGTATGGCCAGGTGAATGACCCTGCAAAG
GCCCAGTTGGTGCTGGAGAAGAAGGGCGTGGAGGACGACCTGAAAAAGTT
GTGGCGGGGTCGCATAGGACTGAATCAAATGCAGCAGGACGAGCTTGTGT
CTGAAGGCAATTAAAAAAGAATGGACATGTGATGAAAGAAAGCAAGAGAA
CCAAATGGGTGGCGCCACTCGAGGTCCGGGAAATAGAGCTGTTGTTTCTT
CCCTCATTATATAGAGGCTGTGTTCTCGCCAAAGCCTTTGGCAACGTTTC
AAACTGACGACGATGAGAGAGCCAGATCTTGGAACATTGGCAGTGTGGAG
TGG

protein sequence of jgi.p|Nanoce1779_2|585340

>mRNA_3321-protein ID=mRNA_3321-protein|Name=jgi.p|Nanoce1779_2|585340|organism=Nannochloropsis oceanica|type=polypeptide|length=334bp
MLSATYCCCVMLTISVAARASLSTNTMRRTLLLRPSSLATAAFTTTTTTT
TTNPTIRRRRLLRRRAVNPEATMAGTVKLYDRHVFVLDPVRGHELWPTHV
EESSFLLIADYKKAQKALTAAAGAAGTVGKMFTLKFTVAEALGHALAAPS
DEENPAITFKDHGLHTVLLFSPTAPSLAIRGLTKADIPTLVKLLVTKENY
SAALPSALPSQVIIQPLPGKDLFVCAHASRDIRCKTCGPRLVGWLKEEAI
KAAKSGSGEDEVRIWPSSHVGGHMHAGNVLVFPSGDWYGQVNDPAKAQLV
LEKKGVEDDLKKLWRGRIGLNQMQQDELVSEGN*

mRNA from alignment at scaffold_7:1203139..1204709+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3321 ID=mRNA_3321|Name=jgi.p|Nanoce1779_2|585340|organism=Nannochloropsis oceanica|type=mRNA|length=1571bp|location=Sequence derived from alignment at scaffold_7:1203139..1204709+ (Nannochloropsis oceanica)
AGAGACTGCAAACCGCCAAGAACGGGGATAAGGCGCGAGCCGTCTCGTCG
GCATCATCTCAGTCACAGCACCACCCACGGCCAGGCGAAAACGTCCTCGC
CTGTAGCGTTCAATGCTCTCCGCGACTTACTGCTGTTGTGTAATGCTCAC
CATCAGCGTTGCTGCTCGGGCCTCCTTGTCCACCAACACCATGAGACGAA
CACTCCTTCTTCGTCCGTCGTCCCTTGCCACTGCCGCCTTTACAACTACC
ACCACTACCACCACCACCAACCCCACGATAAGGCGGCGTCGTCTCCTTCG
CCGTCGGGCCGTCAACCCCGAAGCAACCATGGCTGGTACTGTCAAGTTGT
ATGATCGACATGTACGTTTTGGATATTCCTTTTCTCGTCCTTTGGGATTT
GTTTCCGGCGCTAAGCCTCCCATTCACATACATAGGTCTTCGTCTTGGAT
CCCGTGCGTGGCCACGAGCTCTGGCCGACGCACGTGGAAGAGTCGTCTTT
CTTGCTGATCGCCGACTACAAGAAAGCACAAAAAGCGCTCACGGCGGCGG
CCGGCGCCGCGGGGACGGTTGGGAAAATGTTCACGCTTAAATTCACCGTC
GCCGAGGCCTTGGGCCATGCGTTGGCCGCCCCCAGTGATGGTATGTGAAC
TGGATCTGTTAAACTCAACGATTCCTCTCTGGAAATGATCCCTCGCGCAT
CTAGTTCTTCGGGGGGATGGGAGGTAGGAGGGGAGAAAGCTAAGACCGAG
ACACATCAATCAACTGGACCGTATCACCAAGCACTTACATTTTTCGCTCA
CTTAATGCCATAATCATCCATCCTTATTCTTCAGAGGAAAATCCGGCAAT
AACCTTCAAAGACCATGGCCTGCACACAGTGCTCCTTTTCTCGCCCACGG
CCCCCTCCCTCGCCATCCGCGGTCTCACGAAAGCTGACATTCCAACCCTG
GTCAAGCTCCTCGTCACTAAGGAGAACTACTCAGCCGCCCTTCCTTCAGC
CCTTCCTTCGCAGGTCATTATCCAACCTCTACCCGGCAAGGATCTATTTG
TTTGCGCGCATGCCTCGCGGGACATTCGGTGCAAGACCTGTGGGCCACGG
CTGGTGGGGTGGTTGAAAGAAGAGGCTATCAAAGCGGCGAAATCGGGGTC
TGGAGAAGACGAAGTAAGGATCTGGCCATCGTCGCATGTGGGAGGACACA
TGCACGCGGGAAATGTCTTGGTTTTCCCCAGCGGGGATTGGTATGGCCAG
GTGAATGACCCTGCAAAGGCCCAGTTGGTGCTGGAGAAGAAGGGCGTGGA
GGACGACCTGAAAAAGTTGTGGCGGGGTCGCATAGGACTGAATCAAATGC
AGCAGGACGAGCTTGTGTCTGAAGGCAATTAAAAAAGAATGGACATGTGA
TGAAAGAAAGCAAGAGAACCAAATGGGTGGCGCCACTCGAGGTCCGGGAA
ATAGAGCTGTTGTTTCTTCCCTCATTATATAGAGGCTGTGTTCTCGCCAA
AGCCTTTGGCAACGTTTCAAACTGACGACGATGAGAGAGCCAGATCTTGG
AACATTGGCAGTGTGGAGTGG

Coding sequence (CDS) from alignment at scaffold_7:1203139..1204709+

>mRNA_3321 ID=mRNA_3321|Name=jgi.p|Nanoce1779_2|585340|organism=Nannochloropsis oceanica|type=CDS|length=3006bp|location=Sequence derived from alignment at scaffold_7:1203139..1204709+ (Nannochloropsis oceanica)
ATGCTCTCCGCGACTTACTGCTGTTGTGTAATGCTCACCATCAGCGTTGC
TGCTCGGGCCTCCTTGTCCACCAACACCATGAGACGAACACTCCTTCTTC
GTCCGTCGTCCCTTGCCACTGCCGCCTTTACAACTACCACCACTACCACC
ACCACCAACCCCACGATAAGGCGGCGTCGTCTCCTTCGCCGTCGGGCCGT
CAACCCCGAAGCAACCATGGCTGGTACTGTCAAGTTGTATGATCGACATG
TCTTCGTCTTGGATCCCGTGCGTGGCCACGAGCTCTGGCCGACGCACGTG
GAAGAGTCGTCTTTCTTGCTGATCGCCGACTACAAGAAAGCACAAAAAGC
GCTCACGGCGGCGGCCGGCGCCGCGGGGACGGTTGGGAAAATGTTCACGC
TTAAATTCACCGTCGCCGAGGCCTTGGGCCATGCGTTGGCCGCCCCCAGT
GATGAGGAAAATCCGGCAATAACCTTCAAAGACCATGGCCTGCACACAGT
GCTCCTTTTCTCGCCCACGGCCCCCTCCCTCGCCATCCGCGGTCTCACGA
AAGCTGACATTCCAACCCTGGTCAAGCTCCTCGTCACTAAGGAGAACTAC
TCAGCCGCCCTTCCTTCAGCCCTTCCTTCGCAGGTCATTATCCAACCTCT
ACCCGGCAAGGATCTATTTGTTTGCGCGCATGCCTCGCGGGACATTCGGT
GCAAGACCTGTGGGCCACGGCTGGTGGGGTGGTTGAAAGAAGAGGCTATC
AAAGCGGCGAAATCGGGGTCTGGAGAAGACGAAGTAAGGATCTGGCCATC
GTCGCATGTGGGAGGACACATGCACGCGGGAAATGTCTTGGTTTTCCCCA
GCGGGGATTGGTATGGCCAGGTGAATGACCCTGCAAAGGCCCAGTTGGTG
CTGGAGAAGAAGGGCGTGGAGGACGACCTGAAAAAGTTGTGGCGGGGTCG
CATAGGACTGAATCAAATGCAGCAGGACGAGCTTGTGTCTGAAGGCAATT
AAATGCTCTCCGCGACTTACTGCTGTTGTGTAATGCTCACCATCAGCGTT
GCTGCTCGGGCCTCCTTGTCCACCAACACCATGAGACGAACACTCCTTCT
TCGTCCGTCGTCCCTTGCCACTGCCGCCTTTACAACTACCACCACTACCA
CCACCACCAACCCCACGATAAGGCGGCGTCGTCTCCTTCGCCGTCGGGCC
GTCAACCCCGAAGCAACCATGGCTGGTACTGTCAAGTTGTATGATCGACA
TGTCTTCGTCTTGGATCCCGTGCGTGGCCACGAGCTCTGGCCGACGCACG
TGGAAGAGTCGTCTTTCTTGCTGATCGCCGACTACAAGAAAGCACAAAAA
GCGCTCACGGCGGCGGCCGGCGCCGCGGGGACGGTTGGGAAAATGTTCAC
GCTTAAATTCACCGTCGCCGAGGCCTTGGGCCATGCGTTGGCCGCCCCCA
GTGATGAGGAAAATCCGGCAATAACCTTCAAAGACCATGGCCTGCACACA
GTGCTCCTTTTCTCGCCCACGGCCCCCTCCCTCGCCATCCGCGGTCTCAC
GAAAGCTGACATTCCAACCCTGGTCAAGCTCCTCGTCACTAAGGAGAACT
ACTCAGCCGCCCTTCCTTCAGCCCTTCCTTCGCAGGTCATTATCCAACCT
CTACCCGGCAAGGATCTATTTGTTTGCGCGCATGCCTCGCGGGACATTCG
GTGCAAGACCTGTGGGCCACGGCTGGTGGGGTGGTTGAAAGAAGAGGCTA
TCAAAGCGGCGAAATCGGGGTCTGGAGAAGACGAAGTAAGGATCTGGCCA
TCGTCGCATGTGGGAGGACACATGCACGCGGGAAATGTCTTGGTTTTCCC
CAGCGGGGATTGGTATGGCCAGGTGAATGACCCTGCAAAGGCCCAGTTGG
TGCTGGAGAAGAAGGGCGTGGAGGACGACCTGAAAAAGTTGTGGCGGGGT
CGCATAGGACTGAATCAAATGCAGCAGGACGAGCTTGTGTCTGAAGGCAA
TTAAATGCTCTCCGCGACTTACTGCTGTTGTGTAATGCTCACCATCAGCG
TTGCTGCTCGGGCCTCCTTGTCCACCAACACCATGAGACGAACACTCCTT
CTTCGTCCGTCGTCCCTTGCCACTGCCGCCTTTACAACTACCACCACTAC
CACCACCACCAACCCCACGATAAGGCGGCGTCGTCTCCTTCGCCGTCGGG
CCGTCAACCCCGAAGCAACCATGGCTGGTACTGTCAAGTTGTATGATCGA
CATGTCTTCGTCTTGGATCCCGTGCGTGGCCACGAGCTCTGGCCGACGCA
CGTGGAAGAGTCGTCTTTCTTGCTGATCGCCGACTACAAGAAAGCACAAA
AAGCGCTCACGGCGGCGGCCGGCGCCGCGGGGACGGTTGGGAAAATGTTC
ACGCTTAAATTCACCGTCGCCGAGGCCTTGGGCCATGCGTTGGCCGCCCC
CAGTGATGAGGAAAATCCGGCAATAACCTTCAAAGACCATGGCCTGCACA
CAGTGCTCCTTTTCTCGCCCACGGCCCCCTCCCTCGCCATCCGCGGTCTC
ACGAAAGCTGACATTCCAACCCTGGTCAAGCTCCTCGTCACTAAGGAGAA
CTACTCAGCCGCCCTTCCTTCAGCCCTTCCTTCGCAGGTCATTATCCAAC
CTCTACCCGGCAAGGATCTATTTGTTTGCGCGCATGCCTCGCGGGACATT
CGGTGCAAGACCTGTGGGCCACGGCTGGTGGGGTGGTTGAAAGAAGAGGC
TATCAAAGCGGCGAAATCGGGGTCTGGAGAAGACGAAGTAAGGATCTGGC
CATCGTCGCATGTGGGAGGACACATGCACGCGGGAAATGTCTTGGTTTTC
CCCAGCGGGGATTGGTATGGCCAGGTGAATGACCCTGCAAAGGCCCAGTT
GGTGCTGGAGAAGAAGGGCGTGGAGGACGACCTGAAAAAGTTGTGGCGGG
GTCGCATAGGACTGAATCAAATGCAGCAGGACGAGCTTGTGTCTGAAGGC
AATTAA

Synonyms

Publications