jgi.p|Nanoce1779_2|585336, mRNA_3320 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585336
Unique NamemRNA_3320
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1815
Alignment locationscaffold_7:1200416..1202412 -

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Properties
Property NameValue
TranscriptId585422
TrackFilteredModels2
ProteinId585336
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:1200416..1202412 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585336gene_3320Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585336mRNA_3320-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3320CDS_3320Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3320 ID=mRNA_3320|Name=jgi.p|Nanoce1779_2|585336|organism=Nannochloropsis oceanica|type=mRNA|length=1815bp
ACAGAGCCCTTCCCAATGAACATGGCTGCGTCGCTCGATCAGAGCTTAGG
GATCTTCGATTATTTGCCCAAGGCGGAGACTTCCTCCCTGTCGAATAGCA
TGACCGACATGGGGTCTGGGACCTCGTCGGTACGGGGCCACGAAGAGGAA
GACGACGAGGAAAGTGGGGAGGGTCAGGGCTTTTCGCAGTCCTACAGCTC
CTCCTTTCCGGCCTGCTCTTCGAGCACCACAACCGACACCGCTGGCACCA
CGGCGACGACCACAACGACGGGTACGGCGGCAGTGAATGTGTCAGTTGGT
GCCGTTGCCGGCACACGGAAACGAATTGCCAGCAGTCGCGCCCAGGGAGC
ATCGGACGACAAGCGTCAGAAGAAGTTGGAGCTGAACCGTTTAGCTTCGA
GGGAATCCCGCAAGCGCAAAAAGCGACGTTTGGAAGAGCTGCAGCGATCT
GTCCTCATCTTGACCCATGAAAATCACACCCTGCGTGAACAGAACGAGTT
GCTGCGGCAGATGCTCATCACCCGTTTGCCTTCGTCCGAGTTGGCAAGTG
CCTTGGGTGGGGCTGCAGGAGGGGTGGGAGGAGGAGCAGGAGCGGTGACA
GCAGCGACAGCAGGAGCAGCACCAATGGTTACAGCGGCAGCCATGGGAGG
GATGGGGTTTGTGGCGGCGAAGGGAGAGATGAATGAAGAAGAGTCGCATA
GGCTGGGGCAAGAGCTGGGAGGGGAGGGAGGACATGACCTAGGGAGCTCA
ATATCCTCGGCGGCAGTGGACTTCTTTTTGCCGCACCCGAACATGATTTT
GGGGGGGTTAAAGGAAAGTGGTGACGCTGTGGAAGGAGGGGAGAGGCTGC
GGATGGTGGGGGCGGCATAAGGAGGATAGGAGGGGTCGAAAGAGGATGGT
GATGTGGTGGAGGAGGAGGGAGATGAGAACGGGTAACTGACGTGGTGGAG
GGGAAGGCGAGTCGAGGTCGAAATGGCGCGAAGAGGGCAGGGTGGTCGAA
AGAGGGAGAGAGTAACCGAGGAAAGATGCACCACCTGAGCTCAAGGACAG
GTGAACTGTCCCTCTTCTTCTGCCTCCTGTATTGTGTTTTCCCCCGGCGT
GTTTACGTTACAATCAAAAGTATGGGCAGAAATATAAACCAAAAACGGAA
CGGGGCCTTGACTCTCGGGAAGAAAGAAAGGCAAAGAAAGAGGCGGGAAA
CGGGAGGGAGAGGGAGGGAGTGAGGGGGAGGGAGGGGGAATTCAAAAGTC
CATGTCCCTGTGAAGAAGGGAAGGAAGACGAGTGGGAAACGAAGGGAGGA
AGCTGTAGATGGGGAGGGATAGAGTGGAGAGATGGAGATAGGTAGGAGGG
AGGGAGAATGTCTACGTGTGCGAGAAAGAGAGAGAGAGAGATGTGACGGG
AGAGAAGGACAAGGGGGATAGAGCAACAATGCAGAGAACGAATGAAGGGA
GAGGAGAAGAGAAGGCAAGTGCATGCCTGAAGCCAAAAATAAGAAGAAAG
GGAAGAAGAAGAAGAAAAAGAAGAGGAAAAAGAAGAGGAAGAAAGGGATA
AAAAGTAAGAAGAGAAGAAAAGGAGAAAGAAGAAGAAGAGAAGGAAATGC
AAGAAGAAGAGGAAAAGAAGTCGAAAGGAAGTACATCAGATCATCCACCC
CGCTGTATATATGTGCTAGCCGTGGGCCTTTTCATCGCATGCCTCTTCCT
CTTCCCACTTTTTACTCATAAGTACTTGCTTCCAGTGCTTCTCCGCTTCT
CCCTGCCCCCCTCCTTCCCTCCCTCCTTCCCTCCTTCCCTCCTTCCCTCC
TTCCCTTCCCTCCCC
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protein sequence of jgi.p|Nanoce1779_2|585336

>mRNA_3320-protein ID=mRNA_3320-protein|Name=jgi.p|Nanoce1779_2|585336|organism=Nannochloropsis oceanica|type=polypeptide|length=285bp
MNMAASLDQSLGIFDYLPKAETSSLSNSMTDMGSGTSSVRGHEEEDDEES
GEGQGFSQSYSSSFPACSSSTTTDTAGTTATTTTTGTAAVNVSVGAVAGT
RKRIASSRAQGASDDKRQKKLELNRLASRESRKRKKRRLEELQRSVLILT
HENHTLREQNELLRQMLITRLPSSELASALGGAAGGVGGGAGAVTAATAG
AAPMVTAAAMGGMGFVAAKGEMNEEESHRLGQELGGEGGHDLGSSISSAA
VDFFLPHPNMILGGLKESGDAVEGGERLRMVGAA*
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mRNA from alignment at scaffold_7:1200416..1202412-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3320 ID=mRNA_3320|Name=jgi.p|Nanoce1779_2|585336|organism=Nannochloropsis oceanica|type=mRNA|length=1997bp|location=Sequence derived from alignment at scaffold_7:1200416..1202412- (Nannochloropsis oceanica)
ACAGAGCCCTTCCCAATGAACATGGCTGCGTCGCTCGATCAGAGCTTAGG
GATCTTCGATTATTTGCCCAAGGCGGAGACTTCCTCCCTGTCGAATAGCA
TGACCGACATGGGGTCTGGGACCTCGTCGGTACGGGGCCACGAAGAGGAA
GACGACGAGGAAAGTGGGGAGGGTCAGGGCTTTTCGCAGTCCTACAGCTC
CTCCTTTCCGGCCTGCTCTTCGAGCACCACAACCGACACCGCTGGCACCA
CGGCGACGACCACAACGACGGGTACGGCGGCAGTGAATGTGTCAGTTGGT
GCCGTTGCCGGCACACGGAAACGAATTGCCAGCAGTCGCGCCCAGGGAGC
ATCGGACGACAAGCGTCAGAAGAAGTTGGAGCTGAACCGTTTAGCTTCGA
GGGTACGTAGACGTGTGCATGCAGTTTCCGTACGCAGTGTTTGGTGGAGG
AAGAAAAGGAGGCAGGCATACTTATAAGCCGCCCCCCACACTCAAGCACG
CATTGCGCTCTCTACTTTATTTCTCGTGTCTCAGTCTTTTTCCCCTCCCT
CCCTCCCTCCCTCCCTCCCCTTTCTTCTCCACAGGAATCCCGCAAGCGCA
AAAAGCGACGTTTGGAAGAGCTGCAGCGATCTGTCCTCATCTTGACCCAT
GAAAATCACACCCTGCGTGAACAGAACGAGTTGCTGCGGCAGATGCTCAT
CACCCGTTTGCCTTCGTCCGAGTTGGCAAGTGCCTTGGGTGGGGCTGCAG
GAGGGGTGGGAGGAGGAGCAGGAGCGGTGACAGCAGCGACAGCAGGAGCA
GCACCAATGGTTACAGCGGCAGCCATGGGAGGGATGGGGTTTGTGGCGGC
GAAGGGAGAGATGAATGAAGAAGAGTCGCATAGGCTGGGGCAAGAGCTGG
GAGGGGAGGGAGGACATGACCTAGGGAGCTCAATATCCTCGGCGGCAGTG
GACTTCTTTTTGCCGCACCCGAACATGATTTTGGGGGGGTTAAAGGAAAG
TGGTGACGCTGTGGAAGGAGGGGAGAGGCTGCGGATGGTGGGGGCGGCAT
AAGGAGGATAGGAGGGGTCGAAAGAGGATGGTGATGTGGTGGAGGAGGAG
GGAGATGAGAACGGGTAACTGACGTGGTGGAGGGGAAGGCGAGTCGAGGT
CGAAATGGCGCGAAGAGGGCAGGGTGGTCGAAAGAGGGAGAGAGTAACCG
AGGAAAGATGCACCACCTGAGCTCAAGGACAGGTGAACTGTCCCTCTTCT
TCTGCCTCCTGTATTGTGTTTTCCCCCGGCGTGTTTACGTTACAATCAAA
AGTATGGGCAGAAATATAAACCAAAAACGGAACGGGGCCTTGACTCTCGG
GAAGAAAGAAAGGCAAAGAAAGAGGCGGGAAACGGGAGGGAGAGGGAGGG
AGTGAGGGGGAGGGAGGGGGAATTCAAAAGTCCATGTCCCTGTGAAGAAG
GGAAGGAAGACGAGTGGGAAACGAAGGGAGGAAGCTGTAGATGGGGAGGG
ATAGAGTGGAGAGATGGAGATAGGTAGGAGGGAGGGAGAATGTCTACGTG
TGCGAGAAAGAGAGAGAGAGAGATGTGACGGGAGAGAAGGACAAGGGGGA
TAGAGCAACAATGCAGAGAACGAATGAAGGGAGAGGAGAAGAGAAGGCAA
GTGCATGCCTGAAGCCAAAAATAAGAAGAAAGGGAAGAAGAAGAAGAAAA
AGAAGAGGAAAAAGAAGAGGAAGAAAGGGATAAAAAGTAAGAAGAGAAGA
AAAGGAGAAAGAAGAAGAAGAGAAGGAAATGCAAGAAGAAGAGGAAAAGA
AGTCGAAAGGAAGTACATCAGATCATCCACCCCGCTGTATATATGTGCTA
GCCGTGGGCCTTTTCATCGCATGCCTCTTCCTCTTCCCACTTTTTACTCA
TAAGTACTTGCTTCCAGTGCTTCTCCGCTTCTCCCTGCCCCCCTCCTTCC
CTCCCTCCTTCCCTCCTTCCCTCCTTCCCTCCTTCCCTTCCCTCCCC
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Coding sequence (CDS) from alignment at scaffold_7:1200416..1202412-

>mRNA_3320 ID=mRNA_3320|Name=jgi.p|Nanoce1779_2|585336|organism=Nannochloropsis oceanica|type=CDS|length=1710bp|location=Sequence derived from alignment at scaffold_7:1200416..1202412- (Nannochloropsis oceanica)
GAATCCCGCAAGCGCAAAAAGCGACGTTTGGAAGAGCTGCAGCGATCTGT
CCTCATCTTGACCCATGAAAATCACACCCTGCGTGAACAGAACGAGTTGC
TGCGGCAGATGCTCATCACCCGTTTGCCTTCGTCCGAGTTGGCAAGTGCC
TTGGGTGGGGCTGCAGGAGGGGTGGGAGGAGGAGCAGGAGCGGTGACAGC
AGCGACAGCAGGAGCAGCACCAATGGTTACAGCGGCAGCCATGGGAGGGA
TGGGGTTTGTGGCGGCGAAGGGAGAGATGAATGAAGAAGAGTCGCATAGG
CTGGGGCAAGAGCTGGGAGGGGAGGGAGGACATGACCTAGGGAGCTCAAT
ATCCTCGGCGGCAGTGGACTTCTTTTTGCCGCACCCGAACATGATTTTGG
GGGGGTTAAAGGAAAGTGGTGACGCTGTGGAAGGAGGGGAGAGGCTGCGG
ATGGTGGGGGCGGCATAAATGAACATGGCTGCGTCGCTCGATCAGAGCTT
AGGGATCTTCGATTATTTGCCCAAGGCGGAGACTTCCTCCCTGTCGAATA
GCATGACCGACATGGGGTCTGGGACCTCGTCGGTACGGGGCCACGAAGAG
GAAGACGACGAGGAAAGTGGGGAGGGTCAGGGCTTTTCGCAGTCCTACAG
CTCCTCCTTTCCGGCCTGCTCTTCGAGCACCACAACCGACACCGCTGGCA
CCACGGCGACGACCACAACGACGGGTACGGCGGCAGTGAATGTGTCAGTT
GGTGCCGTTGCCGGCACACGGAAACGAATTGCCAGCAGTCGCGCCCAGGG
AGCATCGGACGACAAGCGTCAGAAGAAGTTGGAGCTGAACCGTTTAGCTT
CGAGGGAATCCCGCAAGCGCAAAAAGCGACGTTTGGAAGAGCTGCAGCGA
TCTGTCCTCATCTTGACCCATGAAAATCACACCCTGCGTGAACAGAACGA
GTTGCTGCGGCAGATGCTCATCACCCGTTTGCCTTCGTCCGAGTTGGCAA
GTGCCTTGGGTGGGGCTGCAGGAGGGGTGGGAGGAGGAGCAGGAGCGGTG
ACAGCAGCGACAGCAGGAGCAGCACCAATGGTTACAGCGGCAGCCATGGG
AGGGATGGGGTTTGTGGCGGCGAAGGGAGAGATGAATGAAGAAGAGTCGC
ATAGGCTGGGGCAAGAGCTGGGAGGGGAGGGAGGACATGACCTAGGGAGC
TCAATATCCTCGGCGGCAGTGGACTTCTTTTTGCCGCACCCGAACATGAT
TTTGGGGGGGTTAAAGGAAAGTGGTGACGCTGTGGAAGGAGGGGAGAGGC
TGCGGATGGTGGGGGCGGCATAAATGAACATGGCTGCGTCGCTCGATCAG
AGCTTAGGGATCTTCGATTATTTGCCCAAGGCGGAGACTTCCTCCCTGTC
GAATAGCATGACCGACATGGGGTCTGGGACCTCGTCGGTACGGGGCCACG
AAGAGGAAGACGACGAGGAAAGTGGGGAGGGTCAGGGCTTTTCGCAGTCC
TACAGCTCCTCCTTTCCGGCCTGCTCTTCGAGCACCACAACCGACACCGC
TGGCACCACGGCGACGACCACAACGACGGGTACGGCGGCAGTGAATGTGT
CAGTTGGTGCCGTTGCCGGCACACGGAAACGAATTGCCAGCAGTCGCGCC
CAGGGAGCATCGGACGACAAGCGTCAGAAGAAGTTGGAGCTGAACCGTTT
AGCTTCGAGG
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Synonyms
Publications