jgi.p|Nanoce1779_2|403482, mRNA_3319 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|403482
Unique NamemRNA_3319
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length735
Alignment locationscaffold_7:1197997..1199571 +

Link to JBrowse

Properties
Property NameValue
TranscriptId403568
TrackFilteredModels2
ProteinId403482
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:1197997..1199571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|403482gene_3319Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|403482mRNA_3319-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3319CDS_3319Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3319 ID=mRNA_3319|Name=jgi.p|Nanoce1779_2|403482|organism=Nannochloropsis oceanica|type=mRNA|length=735bp
CTCCATAACAAGCACAGCATACAGAAAAATAGCCCGGGTGAAGCGATGGG
TGGCCGGGAGGATGGCGGTGGTAGCAATCGCGACGGTGATGGGAAGAAGA
TGAAGCGGAGTCGGTCAGGTTCGGAAGAGCACGAAGGAAGGAGCAGCACC
AACTCCACAGCCCACAAGAAGAGGGAGGAGAAGCAACATTCACGCAATGA
TGGCAGGGACATTGACTCTTCGTCCTTGCCGTCTTCATCCTCCAAGGGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCGACAACAGCGACAACAATGAC
AGCAGTGATTTCGACACCCGAAAGCAGAAAAAGCGCAAGATGGAGCGGAA
CAAGGAAGAAGCCAAGCTCTCGGCTAAAAACCGCAGTGAGACTCAACAGC
GTTCACGGATGTGGCAAACAGTGAGCAGCAGCAGCGAAAGTAGTAGTAGC
AGCAGCGGTGGCGGCGGTAGTAGCAGTGGCAGCAGGAGTGAGAGTGAGGA
GGAAGAGGGGCAGAAGGGAGAGACCCGGAAAGAAATGCGGAAGGAGGGCA
TTGAGGAGGCAAAGAAAGAGGAAGGACAAGAGGGATGCGAAGGTCAAAGG
GAAGAAGAAGAGGAGTAAGAGGGAGGAACCTCCTCCTGTCCCCGGGGCTG
TAGACATGAACCAGTACGGAAAATTTGGCATCATCAGGGAATCGGACTTT
CATCGAAAGAAGAACGACTTCGAGGTCTGGTGCCA
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protein sequence of jgi.p|Nanoce1779_2|403482

>mRNA_3319-protein ID=mRNA_3319-protein|Name=jgi.p|Nanoce1779_2|403482|organism=Nannochloropsis oceanica|type=polypeptide|length=191bp
MGGREDGGGSNRDGDGKKMKRSRSGSEEHEGRSSTNSTAHKKREEKQHSR
NDGRDIDSSSLPSSSSKGSSSSSSSSSSDNSDNNDSSDFDTRKQKKRKME
RNKEEAKLSAKNRSETQQRSRMWQTVSSSSESSSSSSGGGGSSSGSRSES
EEEEGQKGETRKEMRKEGIEEAKKEEGQEGCEGQREEEEE*
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mRNA from alignment at scaffold_7:1197997..1199571+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3319 ID=mRNA_3319|Name=jgi.p|Nanoce1779_2|403482|organism=Nannochloropsis oceanica|type=mRNA|length=1575bp|location=Sequence derived from alignment at scaffold_7:1197997..1199571+ (Nannochloropsis oceanica)
CTCCATAACAAGCACAGCATACAGAAAAATAGCCCGGGTGAAGCGATGGG
TGGCCGGGAGGATGGCGGTGGTAGCAATCGCGACGGTGATGGGAAGAAGA
TGAAGCGGAGTCGGTCAGGTTCGGAAGAGCACGAAGGAAGGAGCAGCACC
AACTCCACAGCCCACAAGAAGAGGGAGGAGAAGCAACATTCACGCAATGA
TGGCAGGGACATGTACGTATTTATATATGCCTTTCTGGTGCCCTGGTTGT
TGGAAAGCTGAGAGCCTGATCCTTCCGCAACAGTTGCTCTTGCTTTTTAC
CTCCTATCATCAAGTCTCTCGTTTCCAATGCACGATCATTACCCAACCGC
ATCGTTGCCTTTTCTACTTTTTTTGGGTACTTTCAATCCACGATCTAACG
CACGATTGCTCCTTCCCCCAGTGACTCTTCGTCCTTGCCGTCTTCATCCT
CCAAGGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGACAACAGCGAC
AACAATGACAGCAGTGATTTCGACACCCGAAAGCAGAAAAAGCGCAAGAT
GGAGCGGGTACGTTTACTTCTCTCCCTATCTATGTGTCTGTCTCCCTATG
TCTATGTCTCTGTCTTTGTGGCTGTCTCTGCTTATTTATCCCACCCAACC
ATATGAGGTACCCTCCCTCCCATCCTCCCTCCCGCCCTCCCCCCCGCCCT
CCCTCCCACCCTACCTTCCCTCTCCCTTCCACCCTCTCTTCCCTCTCCCT
CTTCCGACTCCAGAACAAGGAAGAAGCCAAGCTCTCGGCTAAAAACCGCA
GTGAGACTCAACAGCGTTCACGGATGTGGCAAACAGTGAGCAGCAGCAGC
GAAAGTAGTAGTAGCAGCAGCGGTGGCGGCGGTAGTAGCAGTGGCAGCAG
GAGTGAGAGTGAGGAGGAAGAGGGGCAGAAGGGAGAGACCCGGAAAGAAA
TGCGGAAGGAGGGCATTGAGGAGGCAAGTGGAGAGGATAGAGGGCTGCGA
GGAAGGGAGAAAGAGGGGGAGGAGGAAGAACAAGGAGAGGAGGAGGAGGA
GAGGAAGGCAGCGAAGAAACGAAGGCGGGAGAGAAAGGAGCGGAGGAGGA
GGAAGGAGGAGAGGAAGAAGAGAAGGAGGAAGGAAAAGAAGAAGGAGAGC
AAGAAGCACAAAAAGAAGTCGGACCATGAAAAGAAGAGAAAGAGGAAGGA
CAAGAGGGATGCGAAGGTCAAAGGGAAGAAGAAGAGGAGTAAGAGGGAGG
AACCTCCTCCTGTCCCCGGGGCTGTAGACATGAACCAGTACGGAAAATTT
GGCATCATCAGGGTGAGGAGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
GAGGAGAGAGGGAGCGGGGCCGGTGAGACTTGTCCCTCTTGCTTCGAAGC
ACTGCGATCGATCGATATCTATGCGCGATTATCCATTCACAGCCCTCCCT
CCCTCCCTCCCTCCTTCCCTTTTCCCCTCCTTCCCTCGTTTCCCCCTCCC
TCCCTCCCTCCCTCCCTCCCTTCCTCAGGAATCGGACTTTCATCGAAAGA
AGAACGACTTCGAGGTCTGGTGCCA
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Coding sequence (CDS) from alignment at scaffold_7:1197997..1199571+

>mRNA_3319 ID=mRNA_3319|Name=jgi.p|Nanoce1779_2|403482|organism=Nannochloropsis oceanica|type=CDS|length=2292bp|location=Sequence derived from alignment at scaffold_7:1197997..1199571+ (Nannochloropsis oceanica)
ATGGGTGGCCGGGAGGATGGCGGTGGTAGCAATCGCGACGGTGATGGGAA
GAAGATGAAGCGGAGTCGGTCAGGTTCGGAAGAGCACGAAGGAAGGAGCA
GCACCAACTCCACAGCCCACAAGAAGAGGGAGGAGAAGCAACATTCACGC
AATGATGGCAGGGACATTGACTCTTCGTCCTTGCCGTCTTCATCCTCCAA
GGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGACAACAGCGACAACA
ATGACAGCAGTGATTTCGACACCCGAAAGCAGAAAAAGCGCAAGATGGAG
CGGAACAAGGAAGAAGCCAAGCTCTCGGCTAAAAACCGCAGTGAGACTCA
ACAGCGTTCACGGATGTGGCAAACAGTGAGCAGCAGCAGCGAAAGTAGTA
GTAGCAGCAGCGGTGGCGGCGGTAGTAGCAGTGGCAGCAGGAGTGAGAGT
GAGGAGGAAGAGGGGCAGAAGGGAGAGACCCGGAAAGAAATGCGGAAGGA
GGGCATTGAGGAGGCAAAGAAAGAGGAAGGACAAGAGGGATGCGAAGGTC
AAAGGGAAGAAGAAGAGGAGTAAATGGGTGGCCGGGAGGATGGCGGTGGT
AGCAATCGCGACGGTGATGGGAAGAAGATGAAGCGGAGTCGGTCAGGTTC
GGAAGAGCACGAAGGAAGGAGCAGCACCAACTCCACAGCCCACAAGAAGA
GGGAGGAGAAGCAACATTCACGCAATGATGGCAGGGACATTGACTCTTCG
TCCTTGCCGTCTTCATCCTCCAAGGGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCGACAACAGCGACAACAATGACAGCAGTGATTTCGACACCCGAA
AGCAGAAAAAGCGCAAGATGGAGCGGAACAAGGAAGAAGCCAAGCTCTCG
GCTAAAAACCGCAGTGAGACTCAACAGCGTTCACGGATGTGGCAAACAGT
GAGCAGCAGCAGCGAAAGTAGTAGTAGCAGCAGCGGTGGCGGCGGTAGTA
GCAGTGGCAGCAGGAGTGAGAGTGAGGAGGAAGAGGGGCAGAAGGGAGAG
ACCCGGAAAGAAATGCGGAAGGAGGGCATTGAGGAGGCAAAGAAAGAGGA
AGGACAAGAGGGATGCGAAGGTCAAAGGGAAGAAGAAGAGGAGTAAATGG
GTGGCCGGGAGGATGGCGGTGGTAGCAATCGCGACGGTGATGGGAAGAAG
ATGAAGCGGAGTCGGTCAGGTTCGGAAGAGCACGAAGGAAGGAGCAGCAC
CAACTCCACAGCCCACAAGAAGAGGGAGGAGAAGCAACATTCACGCAATG
ATGGCAGGGACATTGACTCTTCGTCCTTGCCGTCTTCATCCTCCAAGGGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGACAACAGCGACAACAATGA
CAGCAGTGATTTCGACACCCGAAAGCAGAAAAAGCGCAAGATGGAGCGGA
ACAAGGAAGAAGCCAAGCTCTCGGCTAAAAACCGCAGTGAGACTCAACAG
CGTTCACGGATGTGGCAAACAGTGAGCAGCAGCAGCGAAAGTAGTAGTAG
CAGCAGCGGTGGCGGCGGTAGTAGCAGTGGCAGCAGGAGTGAGAGTGAGG
AGGAAGAGGGGCAGAAGGGAGAGACCCGGAAAGAAATGCGGAAGGAGGGC
ATTGAGGAGGCAAAGAAAGAGGAAGGACAAGAGGGATGCGAAGGTCAAAG
GGAAGAAGAAGAGGAGTAAATGGGTGGCCGGGAGGATGGCGGTGGTAGCA
ATCGCGACGGTGATGGGAAGAAGATGAAGCGGAGTCGGTCAGGTTCGGAA
GAGCACGAAGGAAGGAGCAGCACCAACTCCACAGCCCACAAGAAGAGGGA
GGAGAAGCAACATTCACGCAATGATGGCAGGGACATTGACTCTTCGTCCT
TGCCGTCTTCATCCTCCAAGGGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCGACAACAGCGACAACAATGACAGCAGTGATTTCGACACCCGAAAGCA
GAAAAAGCGCAAGATGGAGCGGAACAAGGAAGAAGCCAAGCTCTCGGCTA
AAAACCGCAGTGAGACTCAACAGCGTTCACGGATGTGGCAAACAGTGAGC
AGCAGCAGCGAAAGTAGTAGTAGCAGCAGCGGTGGCGGCGGTAGTAGCAG
TGGCAGCAGGAGTGAGAGTGAGGAGGAAGAGGGGCAGAAGGGAGAGACCC
GGAAAGAAATGCGGAAGGAGGGCATTGAGGAGGCAAAGAAAGAGGAAGGA
CAAGAGGGATGCGAAGGTCAAAGGGAAGAAGAAGAGGAGTAA
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Synonyms
Publications