jgi.p|Nanoce1779_2|585329, mRNA_3318 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585329
Unique NamemRNA_3318
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1015
Alignment locationscaffold_7:1196362..1197615 +

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Properties
Property NameValue
TranscriptId585415
TrackFilteredModels2
ProteinId585329
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:1196362..1197615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585329gene_3318Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585329mRNA_3318-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3318CDS_3318Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3318 ID=mRNA_3318|Name=jgi.p|Nanoce1779_2|585329|organism=Nannochloropsis oceanica|type=mRNA|length=1015bp
CAGACAGCTGGCATAGCTACCATTTTCTCGTGAGATTCAAGCTTCCTGAG
CTGCTCCAGCCTCTCAGCCTCCGCTTGCTTCTTTTTGCTTCTTCGTCGCC
GGGTGTAAGTCGCCGCCGACACTCACAGCAGCCACCACCGCATCAAAACC
CGCTCTAAGCCACGTCGTCCCCAGACGATCCACCTGCTACTCCCTCTCCT
CAGCCTCCTAAGCCTGCCCCGCAACCGGAGCACTATCAAGCGACTGACCA
AGAAGACGGAGAGCGCCTCCCACCCGATACAGACCCTGCCGGAACAATGT
ACTCTTCCTTCGCCCCCTCTTCAACCAACGCCGCCACCAGCACAAATGCC
GCTCAACAAGGCCCGCAAGGCTTCTCACCTTTGGTCGACCCAGCCAATTT
TGAGATCGATAGCAATGGGGTGCGTCGGAGCAGGCAACGACGACGACCTG
GCCGAGGGCCTCCTCCCCCCAAGACAACCCTCGCGGCAGTGCTGATGCTT
GTGGTAGGCACGATATTATTGTGCATCGGTTTGAGCGTGCGATGGCACAC
GGACCCAAAGGAGAAGGAGCGGGGGCTGGCGATGATCATATTGGGATCCT
TGCTGTTCATCCCGGGGAGTTACGCGTCTTTTCAGTTGTACGGAGCTTGG
GCAGGCTGGCCGGGGTACTCGTATGCCTATATTCCCTCGTACGACGATTG
AGTGTGGTAGAGGACAATGTAGGGGAGTATATAGGAAGGAATGAAGGAAG
TAAGGATAGAGGGAGATGAGGAGTGAGGAAGGGGGGGAATTTTTGCGAGT
GTTTCGGGAGGGACGACGGACCGCCCAGAAAAAGTGTACGAGAGTTTCAA
CCATTGAAAAAAGAGAAAACTATTTGGTTCTGATCGGGAGAAGCGATCGA
AATTCGGCACGGTGTATTTTAGGAAGGCAGGCCGAAAAGATGCCCGAAAG
GCAAGGCAACATCGCTCTGCAAAAAGGAAAAAAGACTAAGGAAATATGGA
CGCGCGCCGTATTAA
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protein sequence of jgi.p|Nanoce1779_2|585329

>mRNA_3318-protein ID=mRNA_3318-protein|Name=jgi.p|Nanoce1779_2|585329|organism=Nannochloropsis oceanica|type=polypeptide|length=135bp
MYSSFAPSSTNAATSTNAAQQGPQGFSPLVDPANFEIDSNGVRRSRQRRR
PGRGPPPPKTTLAAVLMLVVGTILLCIGLSVRWHTDPKEKERGLAMIILG
SLLFIPGSYASFQLYGAWAGWPGYSYAYIPSYDD*
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mRNA from alignment at scaffold_7:1196362..1197615+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3318 ID=mRNA_3318|Name=jgi.p|Nanoce1779_2|585329|organism=Nannochloropsis oceanica|type=mRNA|length=1254bp|location=Sequence derived from alignment at scaffold_7:1196362..1197615+ (Nannochloropsis oceanica)
CAGACAGCTGGCATAGCTACCATTTTCTCGTGAGATTCAAGCTTCCTGAG
CTGCTCCAGCCTCTCAGCCTCCGCTTGCTTCTTTTTGCTTCTTCGTCGCC
GGGTGTAAGTCGCCGCCGACACTCACAGCAGCCACCACCGCATCAAAACC
CGCTCTAAGCCACGTCGTCCCCAGACGATCCACCTGCTACTCCCTCTCCT
CAGCCTCCTAAGCCTGCCCCGCAACCGGAGCACTATCAAGCGACTGACCA
AGAAGACGGAGAGCGCCTCCCACCCGATACAGACCCTGCCGGAACAATGT
ACTCTTCCTTCGCCCCCTCTTCAACCAACGCCGCCACCAGCACAAATGCC
GCTCAACAAGGCCCGCAAGGCTTCTCACCTTTGGTCGACCCAGCCAATTT
TGAGATCGATAGCAATGGGGTGCGTCGGAGCAGGCAACGACGACGACCTG
GCCGAGGGCCTCCTCCCCCCAAGACAACCCTCGCGGCAGTGCTGATGCTT
GTGGTAGGCACGATATTATTGTGCATCGGTTTGAGCGTGCGATGGCACAC
GGACCCAAAGGAGAAGGAGCGGGGGCTGGCGATGATCATATTGGGATCCT
TGCGTAAGTTTGGAAGAGGAGGAAGGAGGGAGGGAGGGAGGAAGGGAGGA
AGGGGTAAGTGGGCACTTTAACAGACGGTCCGGTTTGATGATCGCTGCGG
TGCGTTTGAATTGTATCCCTTGTTTTCTTGAGCTCCCATGATAATTCAAA
TTTTGATTGAAATGTTCTCAAAGCAGTGCATAATTCCTTCATCCACTACA
TAGTATTAACCGTTTGAAAACGATACCCACACAAACACGCAGTGTTCATC
CCGGGGAGTTACGCGTCTTTTCAGTTGTACGGAGCTTGGGCAGGCTGGCC
GGGGTACTCGTATGCCTATATTCCCTCGTACGACGATTGAGTGTGGTAGA
GGACAATGTAGGGGAGTATATAGGAAGGAATGAAGGAAGTAAGGATAGAG
GGAGATGAGGAGTGAGGAAGGGGGGGAATTTTTGCGAGTGTTTCGGGAGG
GACGACGGACCGCCCAGAAAAAGTGTACGAGAGTTTCAACCATTGAAAAA
AGAGAAAACTATTTGGTTCTGATCGGGAGAAGCGATCGAAATTCGGCACG
GTGTATTTTAGGAAGGCAGGCCGAAAAGATGCCCGAAAGGCAAGGCAACA
TCGCTCTGCAAAAAGGAAAAAAGACTAAGGAAATATGGACGCGCGCCGTA
TTAA
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Coding sequence (CDS) from alignment at scaffold_7:1196362..1197615+

>mRNA_3318 ID=mRNA_3318|Name=jgi.p|Nanoce1779_2|585329|organism=Nannochloropsis oceanica|type=CDS|length=810bp|location=Sequence derived from alignment at scaffold_7:1196362..1197615+ (Nannochloropsis oceanica)
ATGTACTCTTCCTTCGCCCCCTCTTCAACCAACGCCGCCACCAGCACAAA
TGCCGCTCAACAAGGCCCGCAAGGCTTCTCACCTTTGGTCGACCCAGCCA
ATTTTGAGATCGATAGCAATGGGGTGCGTCGGAGCAGGCAACGACGACGA
CCTGGCCGAGGGCCTCCTCCCCCCAAGACAACCCTCGCGGCAGTGCTGAT
GCTTGTGGTAGGCACGATATTATTGTGCATCGGTTTGAGCGTGCGATGGC
ACACGGACCCAAAGGAGAAGGAGCGGGGGCTGGCGATGATCATATTGGGA
TCCTTGCTGTTCATCCCGGGGAGTTACGCGTCTTTTCAGTTGTACGGAGC
TTGGGCAGGCTGGCCGGGGTACTCGTATGCCTATATTCCCTCGTACGACG
ATTGAATGTACTCTTCCTTCGCCCCCTCTTCAACCAACGCCGCCACCAGC
ACAAATGCCGCTCAACAAGGCCCGCAAGGCTTCTCACCTTTGGTCGACCC
AGCCAATTTTGAGATCGATAGCAATGGGGTGCGTCGGAGCAGGCAACGAC
GACGACCTGGCCGAGGGCCTCCTCCCCCCAAGACAACCCTCGCGGCAGTG
CTGATGCTTGTGGTAGGCACGATATTATTGTGCATCGGTTTGAGCGTGCG
ATGGCACACGGACCCAAAGGAGAAGGAGCGGGGGCTGGCGATGATCATAT
TGGGATCCTTGCTGTTCATCCCGGGGAGTTACGCGTCTTTTCAGTTGTAC
GGAGCTTGGGCAGGCTGGCCGGGGTACTCGTATGCCTATATTCCCTCGTA
CGACGATTGA
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Synonyms
Publications