jgi.p|Nanoce1779_2|585298, mRNA_3313 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585298
Unique NamemRNA_3313
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length444
Alignment locationscaffold_7:1176940..1177383 -

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Properties
Property NameValue
TranscriptId585384
TrackFilteredModels2
ProteinId585298
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:1176940..1177383 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585298gene_3313Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585298mRNA_3313-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3313CDS_3313Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3313 ID=mRNA_3313|Name=jgi.p|Nanoce1779_2|585298|organism=Nannochloropsis oceanica|type=mRNA|length=444bp
ACCACCTTCTCCTCCTCCTCCTTCCCTTCCTCCTCCTCCTCCTCCCCTGC
TGCTTTTGAATGCATTGCCGATTTTGGGCTTGGTTGGGGTTATCAAGAAG
GAAGCGGTGGAAGAAGAGGGGGAGGAAGAGGAGGGTGGCGATGAAGAGGG
CTTAAGCACCTCCTTAGCTCTTCCCGTAGGTTGAGGGAGCGAGGGAAGGA
TGGAGGGAGGATGCAGCACCGAATTCTTCTCCTCTTTTTCCTCCCTCTCT
GTCTCCTTCTCCTTTCTCTGCTCCTCCACCCTAAGCCGCTTTGTATTTAC
CGTCACTGGAGGCACCATCACCTTTCCTTTCCTCCCTCCCTCCCTATCTT
CCTCCTCCTCCTCCTCCTCCTCATTGGCTCCCCATAGTGCCCCGCGTTTG
CGGATGTTCACCAACTCCAAGTCTCTCCCTCCCTCCCTCCCGCC
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protein sequence of jgi.p|Nanoce1779_2|585298

>mRNA_3313-protein ID=mRNA_3313-protein|Name=jgi.p|Nanoce1779_2|585298|organism=Nannochloropsis oceanica|type=polypeptide|length=59bp
MQHRILLLFFLPLCLLLLSLLLHPKPLCIYRHWRHHHLSFPPSLPIFLLL
LLLLIGSP*
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mRNA from alignment at scaffold_7:1176940..1177383-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3313 ID=mRNA_3313|Name=jgi.p|Nanoce1779_2|585298|organism=Nannochloropsis oceanica|type=mRNA|length=444bp|location=Sequence derived from alignment at scaffold_7:1176940..1177383- (Nannochloropsis oceanica)
ACCACCTTCTCCTCCTCCTCCTTCCCTTCCTCCTCCTCCTCCTCCCCTGC
TGCTTTTGAATGCATTGCCGATTTTGGGCTTGGTTGGGGTTATCAAGAAG
GAAGCGGTGGAAGAAGAGGGGGAGGAAGAGGAGGGTGGCGATGAAGAGGG
CTTAAGCACCTCCTTAGCTCTTCCCGTAGGTTGAGGGAGCGAGGGAAGGA
TGGAGGGAGGATGCAGCACCGAATTCTTCTCCTCTTTTTCCTCCCTCTCT
GTCTCCTTCTCCTTTCTCTGCTCCTCCACCCTAAGCCGCTTTGTATTTAC
CGTCACTGGAGGCACCATCACCTTTCCTTTCCTCCCTCCCTCCCTATCTT
CCTCCTCCTCCTCCTCCTCCTCATTGGCTCCCCATAGTGCCCCGCGTTTG
CGGATGTTCACCAACTCCAAGTCTCTCCCTCCCTCCCTCCCGCC
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Coding sequence (CDS) from alignment at scaffold_7:1176940..1177383-

>mRNA_3313 ID=mRNA_3313|Name=jgi.p|Nanoce1779_2|585298|organism=Nannochloropsis oceanica|type=CDS|length=177bp|location=Sequence derived from alignment at scaffold_7:1176940..1177383- (Nannochloropsis oceanica)
ATGCAGCACCGAATTCTTCTCCTCTTTTTCCTCCCTCTCTGTCTCCTTCT
CCTTTCTCTGCTCCTCCACCCTAAGCCGCTTTGTATTTACCGTCACTGGA
GGCACCATCACCTTTCCTTTCCTCCCTCCCTCCCTATCTTCCTCCTCCTC
CTCCTCCTCCTCATTGGCTCCCCATAG
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Synonyms
Publications