jgi.p|Nanoce1779_2|585291, mRNA_3311 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585291
Unique NamemRNA_3311
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1205
Alignment locationscaffold_7:1169426..1170630 -

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Properties
Property NameValue
TranscriptId585377
TrackFilteredModels2
ProteinId585291
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:1169426..1170630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585291gene_3311Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585291mRNA_3311-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3311CDS_3311Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3311 ID=mRNA_3311|Name=jgi.p|Nanoce1779_2|585291|organism=Nannochloropsis oceanica|type=mRNA|length=1205bp
TGGTGCAAGGGAGGGGAGTCGTCCTGTACCAACGTGCAAGTTGTTGAAGG
CGGCCTTCTTCTCGTTTCCTCCCTCACACACACCACTACACGCGCAGGCA
CGCCTGGAACCACACGCTCCATGCAGCGGCATGCATTTCCTAGCTTGTTG
GCGGCGACAGCAGCGGTAGTGGTATGCTGTTTCATCGTTCCTGTCCACGC
CTTCATCTGTCCGACCCTGTCCCACCATCGACTTGTCGCACCCCCGCCTG
CCCACGCGTCCAAAGCCGCCCTGAGCAGGAGAAGAAGACAACGTGCACAT
CCCATCCTCTACGCTCGACTGAAGAATACAGGTAACAAAGTGGATCTCGA
CCCGGACGAAATAGAACGCCTTTTTCAAGCGTTCCTCCGCGGAGACCGCA
GTAGCATGGAGCAATACGAGGAGCAGCGGCGTCTACAAGCGGAAAAAGCA
GAAGAAGACACACAAGGCCTGTGGGGCAAGGCCAAACATGTCATTCGAGG
CATTGGATCCAAGGTCCCTCTTTTATTTATGGCTCCCCTTGTCCTATGGG
TGGGGTTCCAACTAAGTGGATTGGCGGTGGCGCTTGCGTTGACATCTGCC
GTTGTGCTGGCAGGCTTTGCACTTCCCCCCATGTTCGCCCTCACATTTTT
GATACCGCTTATTGCGTTGCTGACACTTGGAATTTTTGTATTTCCCATCG
TTCCGTTCGCGATCCTTGGTTTCCTACCTGGTTTTGCTCTTTTGCCGTTG
CTCTTTTTGGGAGGGTTCTTCTGGTTAACGCAATTTTCAGGCTTGAGCAG
CAGCATCAGCAGCAGGAGCAGCGGGGGGATAGTGGATGGGGATGATGGGT
CATGGCCATGGGGTAATAGTGGCTTTAGCTGGATTAGTATCAACGACGAG
GACGGCGAGACAGTTAGTCAGGGGATGTGGGGAACGCGAAGGGCGGAAAG
AGGAGGGGTCATTGATGTCAAGGCGACTGACGCGGATGATGATGAGGACG
AGGATGGGGGAAATGTGGGAAGCGCCGGAAGAGATTTGGAGGATTTTGAT
CGCCGTTTGCGTGATCGAGAATGAACGGAGAGAGGAAGTGCGATTTGTTT
GTTGGGTTTGAAGCGTGGAGGAGTGTGCATGAGAAAACAGAATAGAATGA
ATAGAGAGAAGGCGAAAGCGGATAACAAAGATAGGAATTAATGAATAATC
TCCCA
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protein sequence of jgi.p|Nanoce1779_2|585291

>mRNA_3311-protein ID=mRNA_3311-protein|Name=jgi.p|Nanoce1779_2|585291|organism=Nannochloropsis oceanica|type=polypeptide|length=318bp
MQRHAFPSLLAATAAVVVCCFIVPVHAFICPTLSHHRLVAPPPAHASKAA
LSRRRRQRAHPILYARLKNTGNKVDLDPDEIERLFQAFLRGDRSSMEQYE
EQRRLQAEKAEEDTQGLWGKAKHVIRGIGSKVPLLFMAPLVLWVGFQLSG
LAVALALTSAVVLAGFALPPMFALTFLIPLIALLTLGIFVFPIVPFAILG
FLPGFALLPLLFLGGFFWLTQFSGLSSSISSRSSGGIVDGDDGSWPWGNS
GFSWISINDEDGETVSQGMWGTRRAERGGVIDVKATDADDDEDEDGGNVG
SAGRDLEDFDRRLRDRE*
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mRNA from alignment at scaffold_7:1169426..1170630-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3311 ID=mRNA_3311|Name=jgi.p|Nanoce1779_2|585291|organism=Nannochloropsis oceanica|type=mRNA|length=1205bp|location=Sequence derived from alignment at scaffold_7:1169426..1170630- (Nannochloropsis oceanica)
TGGTGCAAGGGAGGGGAGTCGTCCTGTACCAACGTGCAAGTTGTTGAAGG
CGGCCTTCTTCTCGTTTCCTCCCTCACACACACCACTACACGCGCAGGCA
CGCCTGGAACCACACGCTCCATGCAGCGGCATGCATTTCCTAGCTTGTTG
GCGGCGACAGCAGCGGTAGTGGTATGCTGTTTCATCGTTCCTGTCCACGC
CTTCATCTGTCCGACCCTGTCCCACCATCGACTTGTCGCACCCCCGCCTG
CCCACGCGTCCAAAGCCGCCCTGAGCAGGAGAAGAAGACAACGTGCACAT
CCCATCCTCTACGCTCGACTGAAGAATACAGGTAACAAAGTGGATCTCGA
CCCGGACGAAATAGAACGCCTTTTTCAAGCGTTCCTCCGCGGAGACCGCA
GTAGCATGGAGCAATACGAGGAGCAGCGGCGTCTACAAGCGGAAAAAGCA
GAAGAAGACACACAAGGCCTGTGGGGCAAGGCCAAACATGTCATTCGAGG
CATTGGATCCAAGGTCCCTCTTTTATTTATGGCTCCCCTTGTCCTATGGG
TGGGGTTCCAACTAAGTGGATTGGCGGTGGCGCTTGCGTTGACATCTGCC
GTTGTGCTGGCAGGCTTTGCACTTCCCCCCATGTTCGCCCTCACATTTTT
GATACCGCTTATTGCGTTGCTGACACTTGGAATTTTTGTATTTCCCATCG
TTCCGTTCGCGATCCTTGGTTTCCTACCTGGTTTTGCTCTTTTGCCGTTG
CTCTTTTTGGGAGGGTTCTTCTGGTTAACGCAATTTTCAGGCTTGAGCAG
CAGCATCAGCAGCAGGAGCAGCGGGGGGATAGTGGATGGGGATGATGGGT
CATGGCCATGGGGTAATAGTGGCTTTAGCTGGATTAGTATCAACGACGAG
GACGGCGAGACAGTTAGTCAGGGGATGTGGGGAACGCGAAGGGCGGAAAG
AGGAGGGGTCATTGATGTCAAGGCGACTGACGCGGATGATGATGAGGACG
AGGATGGGGGAAATGTGGGAAGCGCCGGAAGAGATTTGGAGGATTTTGAT
CGCCGTTTGCGTGATCGAGAATGAACGGAGAGAGGAAGTGCGATTTGTTT
GTTGGGTTTGAAGCGTGGAGGAGTGTGCATGAGAAAACAGAATAGAATGA
ATAGAGAGAAGGCGAAAGCGGATAACAAAGATAGGAATTAATGAATAATC
TCCCA
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Coding sequence (CDS) from alignment at scaffold_7:1169426..1170630-

>mRNA_3311 ID=mRNA_3311|Name=jgi.p|Nanoce1779_2|585291|organism=Nannochloropsis oceanica|type=CDS|length=954bp|location=Sequence derived from alignment at scaffold_7:1169426..1170630- (Nannochloropsis oceanica)
ATGCAGCGGCATGCATTTCCTAGCTTGTTGGCGGCGACAGCAGCGGTAGT
GGTATGCTGTTTCATCGTTCCTGTCCACGCCTTCATCTGTCCGACCCTGT
CCCACCATCGACTTGTCGCACCCCCGCCTGCCCACGCGTCCAAAGCCGCC
CTGAGCAGGAGAAGAAGACAACGTGCACATCCCATCCTCTACGCTCGACT
GAAGAATACAGGTAACAAAGTGGATCTCGACCCGGACGAAATAGAACGCC
TTTTTCAAGCGTTCCTCCGCGGAGACCGCAGTAGCATGGAGCAATACGAG
GAGCAGCGGCGTCTACAAGCGGAAAAAGCAGAAGAAGACACACAAGGCCT
GTGGGGCAAGGCCAAACATGTCATTCGAGGCATTGGATCCAAGGTCCCTC
TTTTATTTATGGCTCCCCTTGTCCTATGGGTGGGGTTCCAACTAAGTGGA
TTGGCGGTGGCGCTTGCGTTGACATCTGCCGTTGTGCTGGCAGGCTTTGC
ACTTCCCCCCATGTTCGCCCTCACATTTTTGATACCGCTTATTGCGTTGC
TGACACTTGGAATTTTTGTATTTCCCATCGTTCCGTTCGCGATCCTTGGT
TTCCTACCTGGTTTTGCTCTTTTGCCGTTGCTCTTTTTGGGAGGGTTCTT
CTGGTTAACGCAATTTTCAGGCTTGAGCAGCAGCATCAGCAGCAGGAGCA
GCGGGGGGATAGTGGATGGGGATGATGGGTCATGGCCATGGGGTAATAGT
GGCTTTAGCTGGATTAGTATCAACGACGAGGACGGCGAGACAGTTAGTCA
GGGGATGTGGGGAACGCGAAGGGCGGAAAGAGGAGGGGTCATTGATGTCA
AGGCGACTGACGCGGATGATGATGAGGACGAGGATGGGGGAAATGTGGGA
AGCGCCGGAAGAGATTTGGAGGATTTTGATCGCCGTTTGCGTGATCGAGA
ATGA
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Synonyms
Publications