jgi.p|Nanoce1779_2|585287, mRNA_3310 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|585287
Unique Name	mRNA_3310
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1762
Alignment location	scaffold_7:1167321..1169412 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	585373
Track	FilteredModels2
ProteinId	585287

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:1167321..1169412 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585287	gene_3310	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585287	mRNA_3310-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3310	CDS_3310	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:1167321..1169412+
coding sequence from alignment at scaffold_7:1167321..1169412+

mRNA sequence

>mRNA_3310 ID=mRNA_3310|Name=jgi.p|Nanoce1779_2|585287|organism=Nannochloropsis oceanica|type=mRNA|length=1762bp
AGGCATCTTCCCAGAGGTTCACTCCACACCCTTGTGTATGATCCTATCGA
GCATGCGTCCTTTGCTGAATCGCCTTCGCCTTCAAACGGGCCGCTTGGCC
CTCATGGCCGTCCCTGCCACGGCAGCCGCCCATTCCTCCTCTTCTTCCAA
GCTTGACGGGACGCCCGAGACATCCGACCCCAAACAGCATTTCGATTACC
TCGTCATCGGTGGCGGCAGCGGTGGGGTCGCCTCCGCCCGTCGTGCCGCC
TCCTACGGGGCAAAAGTCGCCCTGGTAGAGTACAAGGCCCTGGGAGGGAC
GTGCGTGAATGTTGGATGTGTTCCGAAAAAGGTTATGTTTAATACAGCGG
TCTTGGCAGAGCAAATGCAGGAGGCGGGTAATTTTGGGTTCTATCGAAAG
GGTCCCCTTGCGGAGGTGAATACTCATGACAAGAAAGCCGTCCATGAGAC
GTTCGGGTTTGATTGGAAGGCGATTAAGGATGCAAGGGACGCGTACGTGC
ATCGGCTAAACGGAATCTACACCACCTTGTTGCGGAACAGCAAGGTGGAG
GTGTTGGAGGGCATGGCGAGGTTTACGGGGCCCAAGACCGTGAGTGTGGG
GGGGAAGGAGTATACGGCGGACCACATTTTGATTGCCACGGGGGGGAAAC
CGGTAATGCCTCAGATCCCAGGGGTGGATCATTGTATCCACTCGGACGGG
TTCTTCGCGTTGGAGGAGATGCCGAAGCGGGTGGCGGTGGTGGGGGCGGG
TTATATTGCGGTGGAGCTGGCGGGCATCTTTAATTCGCTGGGGTCGGATA
CGAATTTGTTCGTGAGGTATGATGGACCGTTACGGCCGTTTGATGGACTG
TTGCGGGAGACGTTGATGAAGGAGATGGCGGCGACGGGGTTGCAGCTCCA
CAAGAACAGCACGCCCACAGGGGTGGTGAAGGATGAAAAGACAGGGAAAC
TATCCCTTTGTCTGGCCAGTGGCGAGGTGCACGAGGGTTTCGACGTGATA
TTGCTCGCCGTCGGTCGTGTCCCAGAAACGGAGGCCTTGGGGTTAGCGTC
CTCGGGGGTGGCAATTGTGGGAGGGCAGGGGAGCAAAGGCTACATCAAGG
TGGATGCCCACCAGAACACGTCAGTCCCGGGCGTGTACGCCCTGGGAGAT
GTTTGTGGCAAGGTGGAATTGACCCCGATGGCGATCGCGGCCGGGAGGAG
GCTGGCAGATCGATTATTTGGGGGAATGGAAGGGGTCAAGGCTGACTATA
ACGATGTCCCGACGGTGGTGTTCTCGCACCCACCCCTTGGCACGGTGGGA
CTGACGGAGGCGGAGGCACGGGAGAAGTACGAGGAAAAGGACTTGAAGAT
TTACACCAGTCGGTTCGTGAACTTGTTCTATGGCCCATGGACGGTCCCGC
CTGAGAAGAAGCCCAAGACGGCGATGAAACTGATTTGTGTCGGTCCCGAG
GAGAAGGTGGTGGGCCTGCACGTGATTGGGATGGGGGCGGATGAGATGTT
GCAAGGTTTCGCGGTGGCTTTGAAGAAAGGGTGTACCAAGGCGGATTTGG
ATGCGACCTTGGCAATCCACCCGACGGCTGCGGAAGAGTTTGTGACGCTG
GCGCCGTGGGGATTGAGTGGGAAGAAAGGAGAGAAGGCGAGGGCGAAGCT
TTAAGGTGGAGGAAGGAGGGAAGGACTGAGGGACGGATGGAGGGACGGAG
GGAGAAAGGGGAAAGAGAAGGGAAGAAATGGCAACGCACCGAAGCGTTCT
AAATCAATGGTA

protein sequence of jgi.p|Nanoce1779_2|585287

>mRNA_3310-protein ID=mRNA_3310-protein|Name=jgi.p|Nanoce1779_2|585287|organism=Nannochloropsis oceanica|type=polypeptide|length=539bp
MILSSMRPLLNRLRLQTGRLALMAVPATAAAHSSSSSKLDGTPETSDPKQ
HFDYLVIGGGSGGVASARRAASYGAKVALVEYKALGGTCVNVGCVPKKVM
FNTAVLAEQMQEAGNFGFYRKGPLAEVNTHDKKAVHETFGFDWKAIKDAR
DAYVHRLNGIYTTLLRNSKVEVLEGMARFTGPKTVSVGGKEYTADHILIA
TGGKPVMPQIPGVDHCIHSDGFFALEEMPKRVAVVGAGYIAVELAGIFNS
LGSDTNLFVRYDGPLRPFDGLLRETLMKEMAATGLQLHKNSTPTGVVKDE
KTGKLSLCLASGEVHEGFDVILLAVGRVPETEALGLASSGVAIVGGQGSK
GYIKVDAHQNTSVPGVYALGDVCGKVELTPMAIAAGRRLADRLFGGMEGV
KADYNDVPTVVFSHPPLGTVGLTEAEAREKYEEKDLKIYTSRFVNLFYGP
WTVPPEKKPKTAMKLICVGPEEKVVGLHVIGMGADEMLQGFAVALKKGCT
KADLDATLAIHPTAAEEFVTLAPWGLSGKKGEKARAKL*

mRNA from alignment at scaffold_7:1167321..1169412+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3310 ID=mRNA_3310|Name=jgi.p|Nanoce1779_2|585287|organism=Nannochloropsis oceanica|type=mRNA|length=2092bp|location=Sequence derived from alignment at scaffold_7:1167321..1169412+ (Nannochloropsis oceanica)
AGGCATCTTCCCAGAGGTTCACTCCACACCCTTGTGTATGATCCTATCGA
GCATGCGTCCTTTGCTGAATCGCCTTCGCCTTCAAACGGGCCGCTTGGCC
CTCATGGCCGTCCCTGCCACGGCAGCCGCCCATTCCTCCTCTTCTTCCAA
GCTTGACGGGACGCCCGAGGTACGTATGATATGTGCTTACGAAGGACACC
TTTTGATTATTCTTATCCTATGGTGATTCTTTTATGACATGTGTGACGAT
GGCAGGGAATATATGTACTCATGAATGCCTGCCATCGCGTAAATTGTGGT
GCAGGGACGGCCCAACCCCTTCTTCTCTGTCTCCCGTACTCCATCTCCCT
CCCTTGAGAAATCTATCACTCACAATTTAGGACTCAATAATCCCACATAA
GTAGACCACGCCGAGCATCTCCTTATTCCTTAGCTCCTTCCTTCCTATCC
TTTCTAATTCCCTCCTCCCCACCTCTCCTTCCCTATGTCTGCCTGAAAGA
CATCCGACCCCAAACAGCATTTCGATTACCTCGTCATCGGTGGCGGCAGC
GGTGGGGTCGCCTCCGCCCGTCGTGCCGCCTCCTACGGGGCAAAAGTCGC
CCTGGTAGAGTACAAGGCCCTGGGAGGGACGTGCGTGAATGTTGGATGTG
TTCCGAAAAAGGTTATGTTTAATACAGCGGTCTTGGCAGAGCAAATGCAG
GAGGCGGGTAATTTTGGGTTCTATCGAAAGGGTCCCCTTGCGGAGGTGAA
TACTCATGACAAGAAAGCCGTCCATGAGACGTTCGGGTTTGATTGGAAGG
CGATTAAGGATGCAAGGGACGCGTACGTGCATCGGCTAAACGGAATCTAC
ACCACCTTGTTGCGGAACAGCAAGGTGGAGGTGTTGGAGGGCATGGCGAG
GTTTACGGGGCCCAAGACCGTGAGTGTGGGGGGGAAGGAGTATACGGCGG
ACCACATTTTGATTGCCACGGGGGGGAAACCGGTAATGCCTCAGATCCCA
GGGGTGGATCATTGTATCCACTCGGACGGGTTCTTCGCGTTGGAGGAGAT
GCCGAAGCGGGTGGCGGTGGTGGGGGCGGGTTATATTGCGGTGGAGCTGG
CGGGCATCTTTAATTCGCTGGGGTCGGATACGAATTTGTTCGTGAGGTAT
GATGGACCGTTACGGCCGTTTGATGGACTGTTGCGGGAGACGTTGATGAA
GGAGATGGCGGCGACGGGGTTGCAGCTCCACAAGAACAGCACGCCCACAG
GGGTGGTGAAGGATGAAAAGACAGGGAAACTATCCCTTTGTCTGGCCAGT
GGCGAGGTGCACGAGGGTTTCGACGTGATATTGCTCGCCGTCGGTCGTGT
CCCAGAAACGGAGGCCTTGGGGTTAGCGTCCTCGGGGGTGGCAATTGTGG
GAGGGCAGGGGAGCAAAGGCTACATCAAGGTGGATGCCCACCAGAACACG
TCAGTCCCGGGCGTGTACGCCCTGGGAGATGTTTGTGGCAAGGTGGAATT
GACCCCGATGGCGATCGCGGCCGGGAGGAGGCTGGCAGATCGATTATTTG
GGGGAATGGAAGGGGTCAAGGCTGACTATAACGATGTCCCGACGGTGGTG
TTCTCGCACCCACCCCTTGGCACGGTGGGACTGACGGAGGCGGAGGCACG
GGAGAAGTACGAGGAAAAGGACTTGAAGATTTACACCAGTCGGTTCGTGA
ACTTGTTCTATGGCCCATGGACGGTCCCGCCTGAGAAGAAGCCCAAGACG
GCGATGAAACTGATTTGTGTCGGTCCCGAGGAGAAGGTGGTGGGCCTGCA
CGTGATTGGGATGGGGGCGGATGAGATGTTGCAAGGTTTCGCGGTGGCTT
TGAAGAAAGGGTGTACCAAGGCGGATTTGGATGCGACCTTGGCAATCCAC
CCGACGGCTGCGGAAGAGTTTGTGACGCTGGCGCCGTGGGGATTGAGTGG
GAAGAAAGGAGAGAAGGCGAGGGCGAAGCTTTAAGGTGGAGGAAGGAGGG
AAGGACTGAGGGACGGATGGAGGGACGGAGGGAGAAAGGGGAAAGAGAAG
GGAAGAAATGGCAACGCACCGAAGCGTTCTAAATCAATGGTA

Coding sequence (CDS) from alignment at scaffold_7:1167321..1169412+

>mRNA_3310 ID=mRNA_3310|Name=jgi.p|Nanoce1779_2|585287|organism=Nannochloropsis oceanica|type=CDS|length=3234bp|location=Sequence derived from alignment at scaffold_7:1167321..1169412+ (Nannochloropsis oceanica)
ATGATCCTATCGAGCATGCGTCCTTTGCTGAATCGCCTTCGCCTTCAAAC
GGGCCGCTTGGCCCTCATGGCCGTCCCTGCCACGGCAGCCGCCCATTCCT
CCTCTTCTTCCAAGCTTGACGGGACGCCCGAGACATCCGACCCCAAACAG
CATTTCGATTACCTCGTCATCGGTGGCGGCAGCGGTGGGGTCGCCTCCGC
CCGTCGTGCCGCCTCCTACGGGGCAAAAGTCGCCCTGGTAGAGTACAAGG
CCCTGGGAGGGACGTGCGTGAATGTTGGATGTGTTCCGAAAAAGGTTATG
TTTAATACAGCGGTCTTGGCAGAGCAAATGCAGGAGGCGGGTAATTTTGG
GTTCTATCGAAAGGGTCCCCTTGCGGAGGTGAATACTCATGACAAGAAAG
CCGTCCATGAGACGTTCGGGTTTGATTGGAAGGCGATTAAGGATGCAAGG
GACGCGTACGTGCATCGGCTAAACGGAATCTACACCACCTTGTTGCGGAA
CAGCAAGGTGGAGGTGTTGGAGGGCATGGCGAGGTTTACGGGGCCCAAGA
CCGTGAGTGTGGGGGGGAAGGAGTATACGGCGGACCACATTTTGATTGCC
ACGGGGGGGAAACCGGTAATGCCTCAGATCCCAGGGGTGGATCATTGTAT
CCACTCGGACGGGTTCTTCGCGTTGGAGGAGATGCCGAAGCGGGTGGCGG
TGGTGGGGGCGGGTTATATTGCGGTGGAGCTGGCGGGCATCTTTAATTCG
CTGGGGTCGGATACGAATTTGTTCGTGAGGTATGATGGACCGTTACGGCC
GTTTGATGGACTGTTGCGGGAGACGTTGATGAAGGAGATGGCGGCGACGG
GGTTGCAGCTCCACAAGAACAGCACGCCCACAGGGGTGGTGAAGGATGAA
AAGACAGGGAAACTATCCCTTTGTCTGGCCAGTGGCGAGGTGCACGAGGG
TTTCGACGTGATATTGCTCGCCGTCGGTCGTGTCCCAGAAACGGAGGCCT
TGGGGTTAGCGTCCTCGGGGGTGGCAATTGTGGGAGGGCAGGGGAGCAAA
GGCTACATCAAGGTGGATGCCCACCAGAACACGTCAGTCCCGGGCGTGTA
CGCCCTGGGAGATGTTTGTGGCAAGGTGGAATTGACCCCGATGGCGATCG
CGGCCGGGAGGAGGCTGGCAGATCGATTATTTGGGGGAATGGAAGGGGTC
AAGGCTGACTATAACGATGTCCCGACGGTGGTGTTCTCGCACCCACCCCT
TGGCACGGTGGGACTGACGGAGGCGGAGGCACGGGAGAAGTACGAGGAAA
AGGACTTGAAGATTTACACCAGTCGGTTCGTGAACTTGTTCTATGGCCCA
TGGACGGTCCCGCCTGAGAAGAAGCCCAAGACGGCGATGAAACTGATTTG
TGTCGGTCCCGAGGAGAAGGTGGTGGGCCTGCACGTGATTGGGATGGGGG
CGGATGAGATGTTGCAAGGTTTCGCGGTGGCTTTGAAGAAAGGGTGTACC
AAGGCGGATTTGGATGCGACCTTGGCAATCCACCCGACGGCTGCGGAAGA
GTTTGTGACGCTGGCGCCGTGGGGATTGAGTGGGAAGAAAGGAGAGAAGG
CGAGGGCGAAGCTTTAAATGATCCTATCGAGCATGCGTCCTTTGCTGAAT
CGCCTTCGCCTTCAAACGGGCCGCTTGGCCCTCATGGCCGTCCCTGCCAC
GGCAGCCGCCCATTCCTCCTCTTCTTCCAAGCTTGACGGGACGCCCGAGA
CATCCGACCCCAAACAGCATTTCGATTACCTCGTCATCGGTGGCGGCAGC
GGTGGGGTCGCCTCCGCCCGTCGTGCCGCCTCCTACGGGGCAAAAGTCGC
CCTGGTAGAGTACAAGGCCCTGGGAGGGACGTGCGTGAATGTTGGATGTG
TTCCGAAAAAGGTTATGTTTAATACAGCGGTCTTGGCAGAGCAAATGCAG
GAGGCGGGTAATTTTGGGTTCTATCGAAAGGGTCCCCTTGCGGAGGTGAA
TACTCATGACAAGAAAGCCGTCCATGAGACGTTCGGGTTTGATTGGAAGG
CGATTAAGGATGCAAGGGACGCGTACGTGCATCGGCTAAACGGAATCTAC
ACCACCTTGTTGCGGAACAGCAAGGTGGAGGTGTTGGAGGGCATGGCGAG
GTTTACGGGGCCCAAGACCGTGAGTGTGGGGGGGAAGGAGTATACGGCGG
ACCACATTTTGATTGCCACGGGGGGGAAACCGGTAATGCCTCAGATCCCA
GGGGTGGATCATTGTATCCACTCGGACGGGTTCTTCGCGTTGGAGGAGAT
GCCGAAGCGGGTGGCGGTGGTGGGGGCGGGTTATATTGCGGTGGAGCTGG
CGGGCATCTTTAATTCGCTGGGGTCGGATACGAATTTGTTCGTGAGGTAT
GATGGACCGTTACGGCCGTTTGATGGACTGTTGCGGGAGACGTTGATGAA
GGAGATGGCGGCGACGGGGTTGCAGCTCCACAAGAACAGCACGCCCACAG
GGGTGGTGAAGGATGAAAAGACAGGGAAACTATCCCTTTGTCTGGCCAGT
GGCGAGGTGCACGAGGGTTTCGACGTGATATTGCTCGCCGTCGGTCGTGT
CCCAGAAACGGAGGCCTTGGGGTTAGCGTCCTCGGGGGTGGCAATTGTGG
GAGGGCAGGGGAGCAAAGGCTACATCAAGGTGGATGCCCACCAGAACACG
TCAGTCCCGGGCGTGTACGCCCTGGGAGATGTTTGTGGCAAGGTGGAATT
GACCCCGATGGCGATCGCGGCCGGGAGGAGGCTGGCAGATCGATTATTTG
GGGGAATGGAAGGGGTCAAGGCTGACTATAACGATGTCCCGACGGTGGTG
TTCTCGCACCCACCCCTTGGCACGGTGGGACTGACGGAGGCGGAGGCACG
GGAGAAGTACGAGGAAAAGGACTTGAAGATTTACACCAGTCGGTTCGTGA
ACTTGTTCTATGGCCCATGGACGGTCCCGCCTGAGAAGAAGCCCAAGACG
GCGATGAAACTGATTTGTGTCGGTCCCGAGGAGAAGGTGGTGGGCCTGCA
CGTGATTGGGATGGGGGCGGATGAGATGTTGCAAGGTTTCGCGGTGGCTT
TGAAGAAAGGGTGTACCAAGGCGGATTTGGATGCGACCTTGGCAATCCAC
CCGACGGCTGCGGAAGAGTTTGTGACGCTGGCGCCGTGGGGATTGAGTGG
GAAGAAAGGAGAGAAGGCGAGGGCGAAGCTTTAA

Synonyms

Publications