jgi.p|Nanoce1779_2|585277, mRNA_3308 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585277
Unique NamemRNA_3308
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1258
Alignment locationscaffold_7:1159040..1160297 +

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Properties
Property NameValue
TranscriptId585363
TrackFilteredModels2
ProteinId585277
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:1159040..1160297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585277gene_3308Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585277mRNA_3308-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3308CDS_3308Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3308 ID=mRNA_3308|Name=jgi.p|Nanoce1779_2|585277|organism=Nannochloropsis oceanica|type=mRNA|length=1258bp
GTAAGGGGGAGCGGGAGGGAGGGAGGGAGGGAGAGAGAGGGAAATTCAAA
CAGCCAGATGGGCGCACCTTCCCAACGGGGTGATCAATCCTAAGGAATAC
ATTTTCAGGCATCTCTTCATCAAGTCGCCTCCTTGTCCCTTTATCCCGAC
CCACCCCTCCATTCTAGGGAGGATACTCGGACCTTTACGTTCCTTTCTGC
GGGCACGCCGTCATCGAGGAAATGAGTGGGGTGAAGACGGAGGTAAAAGA
TTGCATGCTGACGGACATTAATCATTGGGGGTATCACGAGCTTCAACAGC
ATCAGGTAGGTAAGGAGGGAGAGAGCACCGGATTGGAGAAGGAGAGAGAG
CAAGAACGAGAGGAAAGGTTCACTCACCATGGCACTCTACCACAGGACGC
CGTCATCAAAAAGTGTGAGGTGCTGGTGGATGACCTACAAAAGCGGATGG
CAGCGACGAAATAAGTATGGGTTACGAAGAGGAGAGACCCCTGCATGAAG
CAGAGTTGCTGGGGTATGTGGGAGTGAGTGGGGGAGGTCGGATAATGGAT
ATTAAGGCTCAAGGCCTTGGAGGAGCGAGGAATTTTGAAGGATGCCGATT
ATTTACAATAGGTGGACACATAGTATAAGATGATAGGTGTAGAGAACGTC
AAAATGACGAACGATTGTTCGGGGTTGAAATGGTTTAATGAACGACTTTC
TTGATGAGGAAACGGACTCGAGAGAAGCGCTTCAAGCGTTCCTTCTTGTT
AAGCGTACCAAAGCGCATCATCTGCGAGTCTGAGTCAAACATTCGTAACT
TTGCGTTGCATTCCCTTTTGATTATTGATATTTCGTTTTTTATAAGCGCA
CGCGCGATCCTTTCCATTTGTGTGCTTGTATGGCCGGTCGTGTGGGGTGC
AGTCAGTGATAGGACGCATACAGAAAGAACCTTAACGGCTTCTTCCCCCG
TCATACGCCCCCCTGTCCCGCCTAGCTCCTCAGTCTCAGGGTTAACATCT
GCACGCAGGCGAAATGGACGACGGCGACCCACTTTCTCAGCCAGCCATCC
AGCTCCATCTAGTCTCTCCGCCGCCGAAAGGCAGGAGCCTCTCCAGCAGC
AGCAGCAGCAGCAGCAGCATCATCAGCAGCAACAGCGGCAGCGGCAGCAG
CAGCAGCAGCAGCAGGCGTAGTGCTAGCAGCACACCTCATACTGGGCAGC
AACGACGGCAGCAGCAGCACCACCACCACCAACAGCAACAACAACAACAA
CAACAACA
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protein sequence of jgi.p|Nanoce1779_2|585277

>mRNA_3308-protein ID=mRNA_3308-protein|Name=jgi.p|Nanoce1779_2|585277|organism=Nannochloropsis oceanica|type=polypeptide|length=156bp
MRKRTREKRFKRSFLLSVPKRIICESESNIRNFALHSLLIIDISFFISAR
AILSICVLVWPVVWGAVSDRTHTERTLTASSPVIRPPVPPSSSVSGLTSA
RRRNGRRRPTFSASHPAPSSLSAAERQEPLQQQQQQQQHHQQQQRQRQQQ
QQQQA*
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mRNA from alignment at scaffold_7:1159040..1160297+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3308 ID=mRNA_3308|Name=jgi.p|Nanoce1779_2|585277|organism=Nannochloropsis oceanica|type=mRNA|length=1258bp|location=Sequence derived from alignment at scaffold_7:1159040..1160297+ (Nannochloropsis oceanica)
GTAAGGGGGAGCGGGAGGGAGGGAGGGAGGGAGAGAGAGGGAAATTCAAA
CAGCCAGATGGGCGCACCTTCCCAACGGGGTGATCAATCCTAAGGAATAC
ATTTTCAGGCATCTCTTCATCAAGTCGCCTCCTTGTCCCTTTATCCCGAC
CCACCCCTCCATTCTAGGGAGGATACTCGGACCTTTACGTTCCTTTCTGC
GGGCACGCCGTCATCGAGGAAATGAGTGGGGTGAAGACGGAGGTAAAAGA
TTGCATGCTGACGGACATTAATCATTGGGGGTATCACGAGCTTCAACAGC
ATCAGGTAGGTAAGGAGGGAGAGAGCACCGGATTGGAGAAGGAGAGAGAG
CAAGAACGAGAGGAAAGGTTCACTCACCATGGCACTCTACCACAGGACGC
CGTCATCAAAAAGTGTGAGGTGCTGGTGGATGACCTACAAAAGCGGATGG
CAGCGACGAAATAAGTATGGGTTACGAAGAGGAGAGACCCCTGCATGAAG
CAGAGTTGCTGGGGTATGTGGGAGTGAGTGGGGGAGGTCGGATAATGGAT
ATTAAGGCTCAAGGCCTTGGAGGAGCGAGGAATTTTGAAGGATGCCGATT
ATTTACAATAGGTGGACACATAGTATAAGATGATAGGTGTAGAGAACGTC
AAAATGACGAACGATTGTTCGGGGTTGAAATGGTTTAATGAACGACTTTC
TTGATGAGGAAACGGACTCGAGAGAAGCGCTTCAAGCGTTCCTTCTTGTT
AAGCGTACCAAAGCGCATCATCTGCGAGTCTGAGTCAAACATTCGTAACT
TTGCGTTGCATTCCCTTTTGATTATTGATATTTCGTTTTTTATAAGCGCA
CGCGCGATCCTTTCCATTTGTGTGCTTGTATGGCCGGTCGTGTGGGGTGC
AGTCAGTGATAGGACGCATACAGAAAGAACCTTAACGGCTTCTTCCCCCG
TCATACGCCCCCCTGTCCCGCCTAGCTCCTCAGTCTCAGGGTTAACATCT
GCACGCAGGCGAAATGGACGACGGCGACCCACTTTCTCAGCCAGCCATCC
AGCTCCATCTAGTCTCTCCGCCGCCGAAAGGCAGGAGCCTCTCCAGCAGC
AGCAGCAGCAGCAGCAGCATCATCAGCAGCAACAGCGGCAGCGGCAGCAG
CAGCAGCAGCAGCAGGCGTAGTGCTAGCAGCACACCTCATACTGGGCAGC
AACGACGGCAGCAGCAGCACCACCACCACCAACAGCAACAACAACAACAA
CAACAACA
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Coding sequence (CDS) from alignment at scaffold_7:1159040..1160297+

>mRNA_3308 ID=mRNA_3308|Name=jgi.p|Nanoce1779_2|585277|organism=Nannochloropsis oceanica|type=CDS|length=468bp|location=Sequence derived from alignment at scaffold_7:1159040..1160297+ (Nannochloropsis oceanica)
ATGAGGAAACGGACTCGAGAGAAGCGCTTCAAGCGTTCCTTCTTGTTAAG
CGTACCAAAGCGCATCATCTGCGAGTCTGAGTCAAACATTCGTAACTTTG
CGTTGCATTCCCTTTTGATTATTGATATTTCGTTTTTTATAAGCGCACGC
GCGATCCTTTCCATTTGTGTGCTTGTATGGCCGGTCGTGTGGGGTGCAGT
CAGTGATAGGACGCATACAGAAAGAACCTTAACGGCTTCTTCCCCCGTCA
TACGCCCCCCTGTCCCGCCTAGCTCCTCAGTCTCAGGGTTAACATCTGCA
CGCAGGCGAAATGGACGACGGCGACCCACTTTCTCAGCCAGCCATCCAGC
TCCATCTAGTCTCTCCGCCGCCGAAAGGCAGGAGCCTCTCCAGCAGCAGC
AGCAGCAGCAGCAGCATCATCAGCAGCAACAGCGGCAGCGGCAGCAGCAG
CAGCAGCAGCAGGCGTAG
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Synonyms
Publications