Properties
| Property Name | Value |
|---|
| TranscriptId | 585361 |
| Track | FilteredModels2 |
| ProteinId | 585275 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_7 | supercontig | scaffold_7:1157296..1160297 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3307 ID=mRNA_3307|Name=jgi.p|Nanoce1779_2|585275|organism=Nannochloropsis oceanica|type=mRNA|length=2358bp
ACAGCCTTGAGCCTCGTCCCTTGCCTGCGCCCGTGCGTTCAGATCTCCTG
TAGGGTTGCCGCTTTCTCTCGTCTCTCCACCATTCGCTCGATTGGTGGTA
CTTGAGCAACATACATACGTCGTCATCGCATCGTCATATCAGCTGATACA
GCAGACGCAGAGGCAGCATGGCCGCCAACGGAGGAGAGGTGCACACCGCG
TCCGCCTTGACGACCAAGAAGAGCACGACAGGCTACGTCTGGCATGAGCG
CTACATGTGGCACCATGGCGGGAAGTACGCGTGGAATGAGTGGATCCAGC
CCACCCGGCACTTTGAGTCTCCCGAGTCCAAGCGCCGTCTGCACAACCTC
CTGGATGCCAGCGGCCTCCTCGAAAAGCTCGTTCGCATCCCTCCCCGTCT
TGCCACCGTGGAAGAGATTACTCGCTTCCACACTGCCGAATACGTGGCTA
AGATCCAAAGATTAAGTGCGGAATATGGGGGCGAAGCAGGGGATTTTGCA
ACGTTTGGAAAAGGGTCGTATGACATTGCGCGACTGGCCGTGGGAGGGGT
GTTGGAGGCGGTGGATGCGGTGATCGAGGGAAGGAGAGAAGGAGGGGAGG
AGGGAGAGGTGATCACGAATGCGTACTGCCTCGTTAGACCGCCGGGACAC
CACGCGGAGAGGGATCGGGGGATGGGCTTCTGTTTATTTAATAACGTGGC
GTTGGGCGCATTGCACGCCGTGGCCAAGCACGGGTTGAAACGGGTGGCGA
TTGTGGATTATGACGTTCACCATGGCAACGGCACACAGGCATGTACTCCT
CCCTCCGTCTACCTGCAATCCCACCCCCTTCTTTTTTATGTCGCTATTCT
TCCCCATACTTTCTACAAGGACCCGTCCGTCCTCTTCATTTCCATCCATC
AAGACAGCAACTATCCCGCTGGGACCGGCTACGTCGAGGAACGGGGGCAG
GAAGGGGGGGAGGGCTTCACTATCAACATTCCTCTTCCTCCAGGGAGTGG
GAGCGAGGCCTACTATCAGGCATTTGATCGCGTGGTGCTTCCGGCGGTTC
GGGTGAGTGGCTCGGGAGGAAAGGAGAGAATAAGGGAGGGAAGGGGAAGG
ATACTCGTGCATTCTGATAGTCGATATTATACACATTGGTTTTTGATGCC
TCTCCCTCCCTCCCTCTCTTCCTTCCTCCCTCCCTCCCTCAGGCCTTCGC
CCCTGAGCTGCTCTTGGTCTCCTCCGGGTACGACGCCGGCTTTCTCGACC
CCCTCGCCACAATGATGCTTTCGTCGGAGCATTTTCGAGTGCTGGGGCAG
AAAATGAACGGGGTGGCAGCGGAAGTGTGTGGAGGGAAGATTGTGTACGC
GCACGAGGGAGGATACTCGGACCTTTACGTTCCTTTCTGCGGGCACGCCG
TCATCGAGGAAATGAGTGGGGTGAAGACGGAGGTAAAAGATTGCATGCTG
ACGGACATTAATCATTGGGGGTATCACGAGCTTCAACAGCATCAGGACGC
CGTCATCAAAAAGTGTGAGGTGCTGGTGGATGACCTACAAAAGCGGATGG
CAGCGACGAAATAAGTATGGGTTACGAAGAGGAGAGACCCCTGCATGAAG
CAGAGTTGCTGGGGTATGTGGGAGTGAGTGGGGGAGGTCGGATAATGGAT
ATTAAGGCTCAAGGCCTTGGAGGAGCGAGGAATTTTGAAGGATGCCGATT
ATTTACAATAGGTGGACACATAGTATAAGATGATAGGTGTAGAGAACGTC
AAAATGACGAACGATTGTTCGGGGTTGAAATGGTTTAATGAACGACTTTC
TTGATGAGGAAACGGACTCGAGAGAAGCGCTTCAAGCGTTCCTTCTTGTT
AAGCGTACCAAAGCGCATCATCTGCGAGTCTGAGTCAAACATTCGTAACT
TTGCGTTGCATTCCCTTTTGATTATTGATATTTCGTTTTTTATAAGCGCA
CGCGCGATCCTTTCCATTTGTGTGCTTGTATGGCCGGTCGTGTGGGGTGC
AGTCAGTGATAGGACGCATACAGAAAGAACCTTAACGGCTTCTTCCCCCG
TCATACGCCCCCCTGTCCCGCCTAGCTCCTCAGTCTCAGGGTTAACATCT
GCACGCAGGCGAAATGGACGACGGCGACCCACTTTCTCAGCCAGCCATCC
AGCTCCATCTAGTCTCTCCGCCGCCGAAAGGCAGGAGCCTCTCCAGCAGC
AGCAGCAGCAGCAGCAGCATCATCAGCAGCAACAGCGGCAGCGGCAGCAG
CAGCAGCAGCAGCAGGCGTAGTGCTAGCAGCACACCTCATACTGGGCAGC
AACGACGGCAGCAGCAGCACCACCACCACCAACAGCAACAACAACAACAA
CAACAACA back to topprotein sequence of jgi.p|Nanoce1779_2|585275 >mRNA_3307-protein ID=mRNA_3307-protein|Name=jgi.p|Nanoce1779_2|585275|organism=Nannochloropsis oceanica|type=polypeptide|length=366bp
MAANGGEVHTASALTTKKSTTGYVWHERYMWHHGGKYAWNEWIQPTRHFE
SPESKRRLHNLLDASGLLEKLVRIPPRLATVEEITRFHTAEYVAKIQRLS
AEYGGEAGDFATFGKGSYDIARLAVGGVLEAVDAVIEGRREGGEEGEVIT
NAYCLVRPPGHHAERDRGMGFCLFNNVALGALHAVAKHGLKRVAIVDYDV
HHGNGTQACTPPSVYLQSHPLLFYVAILPHTFYKDPSVLFISIHQDSNYP
AGTGYVEERGQEGGEGFTINIPLPPGSGSEAYYQAFDRVVLPAVRVSGSG
GKERIREGRGRILVHSDSRYYTHWFLMPLPPSLSSFLPPSLRPSPLSCSW
SPPGTTPAFSTPSPQ* back to topmRNA from alignment at scaffold_7:1157296..1160297+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3307 ID=mRNA_3307|Name=jgi.p|Nanoce1779_2|585275|organism=Nannochloropsis oceanica|type=mRNA|length=3002bp|location=Sequence derived from alignment at scaffold_7:1157296..1160297+ (Nannochloropsis oceanica)
ACAGCCTTGAGCCTCGTCCCTTGCCTGCGCCCGTGCGTTCAGATCTCCTG
TAGGGTTGCCGCTTTCTCTCGTCTCTCCACCATTCGCTCGATTGGTGGTA
CTTGAGCAACATACATACGTCGTCATCGCATCGTCATATCAGCTGATACA
GCAGACGCAGAGGCAGCATGGCCGCCAACGGAGGAGAGGTGCACACCGCG
TCCGCCTTGACGACCAAGAAGAGCACGACAGGCTACGTCTGGCATGAGCG
CTACATGTGGCACCATGGCGGGAAGTACGCGTGGAAGTAAGTCACATCGT
CCATTCCTTACGTACACCCTCCACCTTGCTTCATCTCGCCGCCTCAGTCA
CTCCACACTCACGCACATACGACTCTTCCTCACCATAAATTGTACATCGC
AGTGAGTGGATCCAGCCCACCCGGCACTTTGAGTCTCCCGAGTCCAAGCG
CCGTCTGCACAACCTCCTGGATGCCAGCGGCCTCCTCGAAAAGTAAGTGT
TTCCAGCTTCCCACTCCTCTTCCTCCTGCTTTATTCCGTACAATTTAATG
TTCCAGTGGTCTTTACCATCTCCTTATTTTTCTCACAGATAACTCACGTC
GCAATCTAAAGTGCTCCTCTCTCCCTCCTTACCATCCACTCTCAGGCTCG
TTCGCATCCCTCCCCGTCTTGCCACCGTGGAAGAGATTACTCGCTTCCAC
ACTGCCGAATACGTGGCTAAGATCCAAAGATTAAGTGCGGAATATGGGGG
CGAAGCAGGGGATTTTGCAACGTTTGGAAAAGGGTCGTATGACATTGCGC
GACTGGCCGTGGGAGGGGTGTTGGAGGCGGTGGATGCGGTGATCGAGGGA
AGGAGAGAAGGAGGGGAGGAGGGAGAGGTGATCACGAATGCGTACTGCCT
CGTTAGACCGCCGGGACACCACGCGGAGAGGGATCGGGGGATGGGCTTCT
GTTTATTTAATAACGTGGCGTTGGGCGCATTGCACGCCGTGGCCAAGCAC
GGGTTGAAACGGGTGGCGATTGTGGATTATGACGTTCACCATGGCAACGG
CACACAGGCATGTACTCCTCCCTCCGTCTACCTGCAATCCCACCCCCTTC
TTTTTTATGTCGCTATTCTTCCCCATAGTACCCCCCTCCACTCATGTGGC
CTGTTTCACCTCTTTTCGACGCGAATCTGACTTACCTTCCTTCCCCCTTC
TCCCCCCTCCTCCCCTCTCTCCTTCCCTCCCTCTTTGGCAGCAAGCTTTC
TACAAGGACCCGTCCGTCCTCTTCATTTCCATCCATCAAGACAGCAACTA
TCCCGCTGGGACCGGCTACGTCGAGGAACGGGGGCAGGAAGGGGGGGAGG
GCTTCACTATCAACATTCCTCTTCCTCCAGGGAGTGGGAGCGAGGCCTAC
TATCAGGCATTTGATCGCGTGGTGCTTCCGGCGGTTCGGGTGAGTGGCTC
GGGAGGAAAGGAGAGAATAAGGGAGGGAAGGGGAAGGATACTCGTGCATT
CTGATAGTCGATATTATACACATTGGTTTTTGATGCCTCTCCCTCCCTCC
CTCTCTTCCTTCCTCCCTCCCTCCCTCAGGCCTTCGCCCCTGAGCTGCTC
TTGGTCTCCTCCGGGTACGACGCCGGCTTTCTCGACCCCCTCGCCACAAT
GATGCTTTCGTCGGAGCATTTTCGAGTGCTGGGGCAGAAAATGAACGGGG
TGGCAGCGGAAGTGTGTGGAGGGAAGATTGTGTACGCGCACGAGGTAAGG
GGGAGCGGGAGGGAGGGAGGGAGGGAGAGAGAGGGAAATTCAAACAGCCA
GATGGGCGCACCTTCCCAACGGGGTGATCAATCCTAAGGAATACATTTTC
AGGCATCTCTTCATCAAGTCGCCTCCTTGTCCCTTTATCCCGACCCACCC
CTCCATTCTAGGGAGGATACTCGGACCTTTACGTTCCTTTCTGCGGGCAC
GCCGTCATCGAGGAAATGAGTGGGGTGAAGACGGAGGTAAAAGATTGCAT
GCTGACGGACATTAATCATTGGGGGTATCACGAGCTTCAACAGCATCAGG
TAGGTAAGGAGGGAGAGAGCACCGGATTGGAGAAGGAGAGAGAGCAAGAA
CGAGAGGAAAGGTTCACTCACCATGGCACTCTACCACAGGACGCCGTCAT
CAAAAAGTGTGAGGTGCTGGTGGATGACCTACAAAAGCGGATGGCAGCGA
CGAAATAAGTATGGGTTACGAAGAGGAGAGACCCCTGCATGAAGCAGAGT
TGCTGGGGTATGTGGGAGTGAGTGGGGGAGGTCGGATAATGGATATTAAG
GCTCAAGGCCTTGGAGGAGCGAGGAATTTTGAAGGATGCCGATTATTTAC
AATAGGTGGACACATAGTATAAGATGATAGGTGTAGAGAACGTCAAAATG
ACGAACGATTGTTCGGGGTTGAAATGGTTTAATGAACGACTTTCTTGATG
AGGAAACGGACTCGAGAGAAGCGCTTCAAGCGTTCCTTCTTGTTAAGCGT
ACCAAAGCGCATCATCTGCGAGTCTGAGTCAAACATTCGTAACTTTGCGT
TGCATTCCCTTTTGATTATTGATATTTCGTTTTTTATAAGCGCACGCGCG
ATCCTTTCCATTTGTGTGCTTGTATGGCCGGTCGTGTGGGGTGCAGTCAG
TGATAGGACGCATACAGAAAGAACCTTAACGGCTTCTTCCCCCGTCATAC
GCCCCCCTGTCCCGCCTAGCTCCTCAGTCTCAGGGTTAACATCTGCACGC
AGGCGAAATGGACGACGGCGACCCACTTTCTCAGCCAGCCATCCAGCTCC
ATCTAGTCTCTCCGCCGCCGAAAGGCAGGAGCCTCTCCAGCAGCAGCAGC
AGCAGCAGCAGCATCATCAGCAGCAACAGCGGCAGCGGCAGCAGCAGCAG
CAGCAGCAGGCGTAGTGCTAGCAGCACACCTCATACTGGGCAGCAACGAC
GGCAGCAGCAGCACCACCACCACCAACAGCAACAACAACAACAACAACAA
CA back to topCoding sequence (CDS) from alignment at scaffold_7:1157296..1160297+ >mRNA_3307 ID=mRNA_3307|Name=jgi.p|Nanoce1779_2|585275|organism=Nannochloropsis oceanica|type=CDS|length=4392bp|location=Sequence derived from alignment at scaffold_7:1157296..1160297+ (Nannochloropsis oceanica)
ATGGCCGCCAACGGAGGAGAGGTGCACACCGCGTCCGCCTTGACGACCAA
GAAGAGCACGACAGGCTACGTCTGGCATGAGCGCTACATGTGGCACCATG
GCGGGAAGTACGCGTGGAATGAGTGGATCCAGCCCACCCGGCACTTTGAG
TCTCCCGAGTCCAAGCGCCGTCTGCACAACCTCCTGGATGCCAGCGGCCT
CCTCGAAAAGCTCGTTCGCATCCCTCCCCGTCTTGCCACCGTGGAAGAGA
TTACTCGCTTCCACACTGCCGAATACGTGGCTAAGATCCAAAGATTAAGT
GCGGAATATGGGGGCGAAGCAGGGGATTTTGCAACGTTTGGAAAAGGGTC
GTATGACATTGCGCGACTGGCCGTGGGAGGGGTGTTGGAGGCGGTGGATG
CGGTGATCGAGGGAAGGAGAGAAGGAGGGGAGGAGGGAGAGGTGATCACG
AATGCGTACTGCCTCGTTAGACCGCCGGGACACCACGCGGAGAGGGATCG
GGGGATGGGCTTCTGTTTATTTAATAACGTGGCGTTGGGCGCATTGCACG
CCGTGGCCAAGCACGGGTTGAAACGGGTGGCGATTGTGGATTATGACGTT
CACCATGGCAACGGCACACAGGCATGTACTCCTCCCTCCGTCTACCTGCA
ATCCCACCCCCTTCTTTTTTATGTCGCTATTCTTCCCCATACTTTCTACA
AGGACCCGTCCGTCCTCTTCATTTCCATCCATCAAGACAGCAACTATCCC
GCTGGGACCGGCTACGTCGAGGAACGGGGGCAGGAAGGGGGGGAGGGCTT
CACTATCAACATTCCTCTTCCTCCAGGGAGTGGGAGCGAGGCCTACTATC
AGGCATTTGATCGCGTGGTGCTTCCGGCGGTTCGGGTGAGTGGCTCGGGA
GGAAAGGAGAGAATAAGGGAGGGAAGGGGAAGGATACTCGTGCATTCTGA
TAGTCGATATTATACACATTGGTTTTTGATGCCTCTCCCTCCCTCCCTCT
CTTCCTTCCTCCCTCCCTCCCTCAGGCCTTCGCCCCTGAGCTGCTCTTGG
TCTCCTCCGGGTACGACGCCGGCTTTCTCGACCCCCTCGCCACAATGAAT
GGCCGCCAACGGAGGAGAGGTGCACACCGCGTCCGCCTTGACGACCAAGA
AGAGCACGACAGGCTACGTCTGGCATGAGCGCTACATGTGGCACCATGGC
GGGAAGTACGCGTGGAATGAGTGGATCCAGCCCACCCGGCACTTTGAGTC
TCCCGAGTCCAAGCGCCGTCTGCACAACCTCCTGGATGCCAGCGGCCTCC
TCGAAAAGCTCGTTCGCATCCCTCCCCGTCTTGCCACCGTGGAAGAGATT
ACTCGCTTCCACACTGCCGAATACGTGGCTAAGATCCAAAGATTAAGTGC
GGAATATGGGGGCGAAGCAGGGGATTTTGCAACGTTTGGAAAAGGGTCGT
ATGACATTGCGCGACTGGCCGTGGGAGGGGTGTTGGAGGCGGTGGATGCG
GTGATCGAGGGAAGGAGAGAAGGAGGGGAGGAGGGAGAGGTGATCACGAA
TGCGTACTGCCTCGTTAGACCGCCGGGACACCACGCGGAGAGGGATCGGG
GGATGGGCTTCTGTTTATTTAATAACGTGGCGTTGGGCGCATTGCACGCC
GTGGCCAAGCACGGGTTGAAACGGGTGGCGATTGTGGATTATGACGTTCA
CCATGGCAACGGCACACAGGCATGTACTCCTCCCTCCGTCTACCTGCAAT
CCCACCCCCTTCTTTTTTATGTCGCTATTCTTCCCCATACTTTCTACAAG
GACCCGTCCGTCCTCTTCATTTCCATCCATCAAGACAGCAACTATCCCGC
TGGGACCGGCTACGTCGAGGAACGGGGGCAGGAAGGGGGGGAGGGCTTCA
CTATCAACATTCCTCTTCCTCCAGGGAGTGGGAGCGAGGCCTACTATCAG
GCATTTGATCGCGTGGTGCTTCCGGCGGTTCGGGTGAGTGGCTCGGGAGG
AAAGGAGAGAATAAGGGAGGGAAGGGGAAGGATACTCGTGCATTCTGATA
GTCGATATTATACACATTGGTTTTTGATGCCTCTCCCTCCCTCCCTCTCT
TCCTTCCTCCCTCCCTCCCTCAGGCCTTCGCCCCTGAGCTGCTCTTGGTC
TCCTCCGGGTACGACGCCGGCTTTCTCGACCCCCTCGCCACAATGAATGG
CCGCCAACGGAGGAGAGGTGCACACCGCGTCCGCCTTGACGACCAAGAAG
AGCACGACAGGCTACGTCTGGCATGAGCGCTACATGTGGCACCATGGCGG
GAAGTACGCGTGGAATGAGTGGATCCAGCCCACCCGGCACTTTGAGTCTC
CCGAGTCCAAGCGCCGTCTGCACAACCTCCTGGATGCCAGCGGCCTCCTC
GAAAAGCTCGTTCGCATCCCTCCCCGTCTTGCCACCGTGGAAGAGATTAC
TCGCTTCCACACTGCCGAATACGTGGCTAAGATCCAAAGATTAAGTGCGG
AATATGGGGGCGAAGCAGGGGATTTTGCAACGTTTGGAAAAGGGTCGTAT
GACATTGCGCGACTGGCCGTGGGAGGGGTGTTGGAGGCGGTGGATGCGGT
GATCGAGGGAAGGAGAGAAGGAGGGGAGGAGGGAGAGGTGATCACGAATG
CGTACTGCCTCGTTAGACCGCCGGGACACCACGCGGAGAGGGATCGGGGG
ATGGGCTTCTGTTTATTTAATAACGTGGCGTTGGGCGCATTGCACGCCGT
GGCCAAGCACGGGTTGAAACGGGTGGCGATTGTGGATTATGACGTTCACC
ATGGCAACGGCACACAGGCATGTACTCCTCCCTCCGTCTACCTGCAATCC
CACCCCCTTCTTTTTTATGTCGCTATTCTTCCCCATACTTTCTACAAGGA
CCCGTCCGTCCTCTTCATTTCCATCCATCAAGACAGCAACTATCCCGCTG
GGACCGGCTACGTCGAGGAACGGGGGCAGGAAGGGGGGGAGGGCTTCACT
ATCAACATTCCTCTTCCTCCAGGGAGTGGGAGCGAGGCCTACTATCAGGC
ATTTGATCGCGTGGTGCTTCCGGCGGTTCGGGTGAGTGGCTCGGGAGGAA
AGGAGAGAATAAGGGAGGGAAGGGGAAGGATACTCGTGCATTCTGATAGT
CGATATTATACACATTGGTTTTTGATGCCTCTCCCTCCCTCCCTCTCTTC
CTTCCTCCCTCCCTCCCTCAGGCCTTCGCCCCTGAGCTGCTCTTGGTCTC
CTCCGGGTACGACGCCGGCTTTCTCGACCCCCTCGCCACAATGAATGGCC
GCCAACGGAGGAGAGGTGCACACCGCGTCCGCCTTGACGACCAAGAAGAG
CACGACAGGCTACGTCTGGCATGAGCGCTACATGTGGCACCATGGCGGGA
AGTACGCGTGGAATGAGTGGATCCAGCCCACCCGGCACTTTGAGTCTCCC
GAGTCCAAGCGCCGTCTGCACAACCTCCTGGATGCCAGCGGCCTCCTCGA
AAAGCTCGTTCGCATCCCTCCCCGTCTTGCCACCGTGGAAGAGATTACTC
GCTTCCACACTGCCGAATACGTGGCTAAGATCCAAAGATTAAGTGCGGAA
TATGGGGGCGAAGCAGGGGATTTTGCAACGTTTGGAAAAGGGTCGTATGA
CATTGCGCGACTGGCCGTGGGAGGGGTGTTGGAGGCGGTGGATGCGGTGA
TCGAGGGAAGGAGAGAAGGAGGGGAGGAGGGAGAGGTGATCACGAATGCG
TACTGCCTCGTTAGACCGCCGGGACACCACGCGGAGAGGGATCGGGGGAT
GGGCTTCTGTTTATTTAATAACGTGGCGTTGGGCGCATTGCACGCCGTGG
CCAAGCACGGGTTGAAACGGGTGGCGATTGTGGATTATGACGTTCACCAT
GGCAACGGCACACAGGCATGTACTCCTCCCTCCGTCTACCTGCAATCCCA
CCCCCTTCTTTTTTATGTCGCTATTCTTCCCCATACTTTCTACAAGGACC
CGTCCGTCCTCTTCATTTCCATCCATCAAGACAGCAACTATCCCGCTGGG
ACCGGCTACGTCGAGGAACGGGGGCAGGAAGGGGGGGAGGGCTTCACTAT
CAACATTCCTCTTCCTCCAGGGAGTGGGAGCGAGGCCTACTATCAGGCAT
TTGATCGCGTGGTGCTTCCGGCGGTTCGGGTGAGTGGCTCGGGAGGAAAG
GAGAGAATAAGGGAGGGAAGGGGAAGGATACTCGTGCATTCTGATAGTCG
ATATTATACACATTGGTTTTTGATGCCTCTCCCTCCCTCCCTCTCTTCCT
TCCTCCCTCCCTCCCTCAGGCCTTCGCCCCTGAGCTGCTCTTGGTCTCCT
CCGGGTACGACGCCGGCTTTCTCGACCCCCTCGCCACAATGA back to top
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