jgi.p|Nanoce1779_2|585272, mRNA_3306 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|585272
Unique Name	mRNA_3306
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2215
Alignment location	scaffold_7:1154789..1157003 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	585358
Track	FilteredModels2
ProteinId	585272

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:1154789..1157003 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585272	gene_3306	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585272	mRNA_3306-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3306	CDS_3306	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:1154789..1157003-
coding sequence from alignment at scaffold_7:1154789..1157003-

mRNA sequence

>mRNA_3306 ID=mRNA_3306|Name=jgi.p|Nanoce1779_2|585272|organism=Nannochloropsis oceanica|type=mRNA|length=2215bp
CAGGCCCATGGGGCCTACCTCCACTCCTACTCCTACGCCTCCTCTTTCTC
CTGCTGGCTTACCGCTAGATCCCAAGAAAGAAGAAAACGAAGATGAAGAT
CATGATAGCAACCACCTTACCCTTTCTGAACTCAAAATGTTGGTGCGGAA
AAAGCTGCGGGAATCTGGCGCCATCGACGATATTTTAGGGCAGCTCCGCG
GTCACCTGTTGAGACCACTGGCACGAGCCAATATCCATGAAGACCAAAAA
GTGCATCCATGCCCCGGCATGTCTTTGGAAAACATGGTTCTCAATAGCCT
TGTCGTCGATTTCCTGCGGCACCAAAAATTTCGCCAGACATTGGCGGTGT
TCTTGCCTGAGAGTCACATGCTGGTCCAGCAACACCTCCTGTCACGACAC
GACCTGGCTGAGACGTTGATGCTGGCGCAGAGCAAAGGTGAATCAGAACA
CAAAAGTCTCCTTCACGCATTGGTGCTACCTTTTCAAAGAGCCGAGCCAG
CCGTCGTCTCCTCTTCCTCTTCCTCCCACACTCAAACCCAAACTGAGGCA
GTTTCGACGACGACTACCACCCCTTCCCTTACACAACCCCCTTCCCCCCT
CCACCAGCACCAGCACGAGAAACATCTGAGTCGATTCCAACAAGAATGCG
AAGCTCGCGCCCAGAAGGAAATAGCTGCGGAGATATCTCATTTTCGGGAG
ACGGAGCTGACACACCTCAGGTTGGAAGAGGCCGCGAAGCACCGACGGGA
GCTATTAATTGTCCGCGAGGAAATGCAAGCGACGCAAGACCGGAAAGTGG
AGCAGGCATGGGCACAAGCTAAAGAGGAGGAACGTCGTGTTCGTGTCCGG
TTACAAGCAGCGGAGGCAGCTCAATTCGAGGCGCGACAGGCGGTGTTACG
TGATATGGAGGCCATGCGACGACGCAAGGAAGAGGTGGAACGAGCAGAGG
CACGAGCCGCAGAACGACAGGCAATCCTAGACAAAGAACAATTCACGTTC
AGAGAGCAAATCGCTGCATGGGCTCGACAACGTGCGGGGGAGACAGCAGC
TGCTCACCAAGATGGCGCGAAGGCATACGCATCGCAGCAACAGAGCCTGC
AGGTCCAACAGCACCTTGTCCAGGAAGAGCTTCGAAAAGCACAAGCCGAA
AGATTGGTGTATCAGGAGCAGAGAGCAGATATGCAAGCATTACGAAGGCA
AGTGGAGGAAGCGAGGGGTTGCGTGGAAGAGGTGGAGATGTTGAGGAAGG
AGAAGGAGCGGTGGGTTGTAGCGAGAGAGCGGTTGCAGAGGCAGGAGGAG
GAGGCCTGGGCACGAGAGCAGGAGGCAACGGCCATGGTTAGAAATCTTGA
GCGGACATGCGCAAATCTAGAGAATGAGAATGAGAAAACGCGGCAGCATG
CGAGGGAGGATGAGGCAGAGTTGGAGGGATTAAGGGAGGAAGTGAGGACG
TTGCGGGATTTGTTAGCGTCGTCAACGAAGGCTTTGCATTGCTTGGGAGG
GAGGGCAGAGAGGAAACCAGGCATGGAGGCGGAGCAGGAACAAATAACAG
GAAATCCTCACATACCGTTGTCACTGTCTTTTCCAAAGCCCGAGTTCACA
CAACCATCACTATCACGGCCGGTGGCGATGCCGCCACTCACGTGTGCCCC
GCTCATGCCGATGCCGCCGCCTACATTCCTGTCATTGCCTGTGGCCTGCC
ACCTGCCCCCGTCACCACTTCGATATCCACCTCATTTCGCTTCATCATCT
GTTGCCCCCTCTTCATTCAACCCTTCCTCTTCTTCATCCTGCTCCTCCTC
CTCCTCGACTGCGATTGAATCGGCCATGCGTGCGTACGAGACGGAGGTAC
AAAAACTGCAAGAGGTGCACGATGAATTCCTTATCCTGCATGGGAGAGGA
AGCGATGATTCTGTTACCGCTGCTACCGCTGCTACCGCTGCTGTTGCTAC
TGCAGCAGGCGCGGTCAAGAAGCAGGTGGATAGCGATGAAGCGGAGGAAA
GGGAGGTGGCTGAGGACGTGTGTGTGGGTGAAAAGTGAAAGGAGGTTGAA
GTTGAGACAATGAGACTTAGTTGTTGGTTGTTAATGGATGACAAAAACGG
GAAAGGATTACATGTAGAGTAGGACTTGAGTGTGTGCAAACGCGGCGAGG
CCTCGACGGACGCCACCCTGAGGAATGAGATTACCGTTTGTAAAGAATCA
ATCGAAATAGAGAGG

protein sequence of jgi.p|Nanoce1779_2|585272

>mRNA_3306-protein ID=mRNA_3306-protein|Name=jgi.p|Nanoce1779_2|585272|organism=Nannochloropsis oceanica|type=polypeptide|length=677bp
MGPTSTPTPTPPLSPAGLPLDPKKEENEDEDHDSNHLTLSELKMLVRKKL
RESGAIDDILGQLRGHLLRPLARANIHEDQKVHPCPGMSLENMVLNSLVV
DFLRHQKFRQTLAVFLPESHMLVQQHLLSRHDLAETLMLAQSKGESEHKS
LLHALVLPFQRAEPAVVSSSSSSHTQTQTEAVSTTTTTPSLTQPPSPLHQ
HQHEKHLSRFQQECEARAQKEIAAEISHFRETELTHLRLEEAAKHRRELL
IVREEMQATQDRKVEQAWAQAKEEERRVRVRLQAAEAAQFEARQAVLRDM
EAMRRRKEEVERAEARAAERQAILDKEQFTFREQIAAWARQRAGETAAAH
QDGAKAYASQQQSLQVQQHLVQEELRKAQAERLVYQEQRADMQALRRQVE
EARGCVEEVEMLRKEKERWVVARERLQRQEEEAWAREQEATAMVRNLERT
CANLENENEKTRQHAREDEAELEGLREEVRTLRDLLASSTKALHCLGGRA
ERKPGMEAEQEQITGNPHIPLSLSFPKPEFTQPSLSRPVAMPPLTCAPLM
PMPPPTFLSLPVACHLPPSPLRYPPHFASSSVAPSSFNPSSSSSCSSSSS
TAIESAMRAYETEVQKLQEVHDEFLILHGRGSDDSVTAATAATAAVATAA
GAVKKQVDSDEAEEREVAEDVCVGEK*

mRNA from alignment at scaffold_7:1154789..1157003-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3306 ID=mRNA_3306|Name=jgi.p|Nanoce1779_2|585272|organism=Nannochloropsis oceanica|type=mRNA|length=2215bp|location=Sequence derived from alignment at scaffold_7:1154789..1157003- (Nannochloropsis oceanica)
CAGGCCCATGGGGCCTACCTCCACTCCTACTCCTACGCCTCCTCTTTCTC
CTGCTGGCTTACCGCTAGATCCCAAGAAAGAAGAAAACGAAGATGAAGAT
CATGATAGCAACCACCTTACCCTTTCTGAACTCAAAATGTTGGTGCGGAA
AAAGCTGCGGGAATCTGGCGCCATCGACGATATTTTAGGGCAGCTCCGCG
GTCACCTGTTGAGACCACTGGCACGAGCCAATATCCATGAAGACCAAAAA
GTGCATCCATGCCCCGGCATGTCTTTGGAAAACATGGTTCTCAATAGCCT
TGTCGTCGATTTCCTGCGGCACCAAAAATTTCGCCAGACATTGGCGGTGT
TCTTGCCTGAGAGTCACATGCTGGTCCAGCAACACCTCCTGTCACGACAC
GACCTGGCTGAGACGTTGATGCTGGCGCAGAGCAAAGGTGAATCAGAACA
CAAAAGTCTCCTTCACGCATTGGTGCTACCTTTTCAAAGAGCCGAGCCAG
CCGTCGTCTCCTCTTCCTCTTCCTCCCACACTCAAACCCAAACTGAGGCA
GTTTCGACGACGACTACCACCCCTTCCCTTACACAACCCCCTTCCCCCCT
CCACCAGCACCAGCACGAGAAACATCTGAGTCGATTCCAACAAGAATGCG
AAGCTCGCGCCCAGAAGGAAATAGCTGCGGAGATATCTCATTTTCGGGAG
ACGGAGCTGACACACCTCAGGTTGGAAGAGGCCGCGAAGCACCGACGGGA
GCTATTAATTGTCCGCGAGGAAATGCAAGCGACGCAAGACCGGAAAGTGG
AGCAGGCATGGGCACAAGCTAAAGAGGAGGAACGTCGTGTTCGTGTCCGG
TTACAAGCAGCGGAGGCAGCTCAATTCGAGGCGCGACAGGCGGTGTTACG
TGATATGGAGGCCATGCGACGACGCAAGGAAGAGGTGGAACGAGCAGAGG
CACGAGCCGCAGAACGACAGGCAATCCTAGACAAAGAACAATTCACGTTC
AGAGAGCAAATCGCTGCATGGGCTCGACAACGTGCGGGGGAGACAGCAGC
TGCTCACCAAGATGGCGCGAAGGCATACGCATCGCAGCAACAGAGCCTGC
AGGTCCAACAGCACCTTGTCCAGGAAGAGCTTCGAAAAGCACAAGCCGAA
AGATTGGTGTATCAGGAGCAGAGAGCAGATATGCAAGCATTACGAAGGCA
AGTGGAGGAAGCGAGGGGTTGCGTGGAAGAGGTGGAGATGTTGAGGAAGG
AGAAGGAGCGGTGGGTTGTAGCGAGAGAGCGGTTGCAGAGGCAGGAGGAG
GAGGCCTGGGCACGAGAGCAGGAGGCAACGGCCATGGTTAGAAATCTTGA
GCGGACATGCGCAAATCTAGAGAATGAGAATGAGAAAACGCGGCAGCATG
CGAGGGAGGATGAGGCAGAGTTGGAGGGATTAAGGGAGGAAGTGAGGACG
TTGCGGGATTTGTTAGCGTCGTCAACGAAGGCTTTGCATTGCTTGGGAGG
GAGGGCAGAGAGGAAACCAGGCATGGAGGCGGAGCAGGAACAAATAACAG
GAAATCCTCACATACCGTTGTCACTGTCTTTTCCAAAGCCCGAGTTCACA
CAACCATCACTATCACGGCCGGTGGCGATGCCGCCACTCACGTGTGCCCC
GCTCATGCCGATGCCGCCGCCTACATTCCTGTCATTGCCTGTGGCCTGCC
ACCTGCCCCCGTCACCACTTCGATATCCACCTCATTTCGCTTCATCATCT
GTTGCCCCCTCTTCATTCAACCCTTCCTCTTCTTCATCCTGCTCCTCCTC
CTCCTCGACTGCGATTGAATCGGCCATGCGTGCGTACGAGACGGAGGTAC
AAAAACTGCAAGAGGTGCACGATGAATTCCTTATCCTGCATGGGAGAGGA
AGCGATGATTCTGTTACCGCTGCTACCGCTGCTACCGCTGCTGTTGCTAC
TGCAGCAGGCGCGGTCAAGAAGCAGGTGGATAGCGATGAAGCGGAGGAAA
GGGAGGTGGCTGAGGACGTGTGTGTGGGTGAAAAGTGAAAGGAGGTTGAA
GTTGAGACAATGAGACTTAGTTGTTGGTTGTTAATGGATGACAAAAACGG
GAAAGGATTACATGTAGAGTAGGACTTGAGTGTGTGCAAACGCGGCGAGG
CCTCGACGGACGCCACCCTGAGGAATGAGATTACCGTTTGTAAAGAATCA
ATCGAAATAGAGAGG

Coding sequence (CDS) from alignment at scaffold_7:1154789..1157003-

>mRNA_3306 ID=mRNA_3306|Name=jgi.p|Nanoce1779_2|585272|organism=Nannochloropsis oceanica|type=CDS|length=2031bp|location=Sequence derived from alignment at scaffold_7:1154789..1157003- (Nannochloropsis oceanica)
ATGGGGCCTACCTCCACTCCTACTCCTACGCCTCCTCTTTCTCCTGCTGG
CTTACCGCTAGATCCCAAGAAAGAAGAAAACGAAGATGAAGATCATGATA
GCAACCACCTTACCCTTTCTGAACTCAAAATGTTGGTGCGGAAAAAGCTG
CGGGAATCTGGCGCCATCGACGATATTTTAGGGCAGCTCCGCGGTCACCT
GTTGAGACCACTGGCACGAGCCAATATCCATGAAGACCAAAAAGTGCATC
CATGCCCCGGCATGTCTTTGGAAAACATGGTTCTCAATAGCCTTGTCGTC
GATTTCCTGCGGCACCAAAAATTTCGCCAGACATTGGCGGTGTTCTTGCC
TGAGAGTCACATGCTGGTCCAGCAACACCTCCTGTCACGACACGACCTGG
CTGAGACGTTGATGCTGGCGCAGAGCAAAGGTGAATCAGAACACAAAAGT
CTCCTTCACGCATTGGTGCTACCTTTTCAAAGAGCCGAGCCAGCCGTCGT
CTCCTCTTCCTCTTCCTCCCACACTCAAACCCAAACTGAGGCAGTTTCGA
CGACGACTACCACCCCTTCCCTTACACAACCCCCTTCCCCCCTCCACCAG
CACCAGCACGAGAAACATCTGAGTCGATTCCAACAAGAATGCGAAGCTCG
CGCCCAGAAGGAAATAGCTGCGGAGATATCTCATTTTCGGGAGACGGAGC
TGACACACCTCAGGTTGGAAGAGGCCGCGAAGCACCGACGGGAGCTATTA
ATTGTCCGCGAGGAAATGCAAGCGACGCAAGACCGGAAAGTGGAGCAGGC
ATGGGCACAAGCTAAAGAGGAGGAACGTCGTGTTCGTGTCCGGTTACAAG
CAGCGGAGGCAGCTCAATTCGAGGCGCGACAGGCGGTGTTACGTGATATG
GAGGCCATGCGACGACGCAAGGAAGAGGTGGAACGAGCAGAGGCACGAGC
CGCAGAACGACAGGCAATCCTAGACAAAGAACAATTCACGTTCAGAGAGC
AAATCGCTGCATGGGCTCGACAACGTGCGGGGGAGACAGCAGCTGCTCAC
CAAGATGGCGCGAAGGCATACGCATCGCAGCAACAGAGCCTGCAGGTCCA
ACAGCACCTTGTCCAGGAAGAGCTTCGAAAAGCACAAGCCGAAAGATTGG
TGTATCAGGAGCAGAGAGCAGATATGCAAGCATTACGAAGGCAAGTGGAG
GAAGCGAGGGGTTGCGTGGAAGAGGTGGAGATGTTGAGGAAGGAGAAGGA
GCGGTGGGTTGTAGCGAGAGAGCGGTTGCAGAGGCAGGAGGAGGAGGCCT
GGGCACGAGAGCAGGAGGCAACGGCCATGGTTAGAAATCTTGAGCGGACA
TGCGCAAATCTAGAGAATGAGAATGAGAAAACGCGGCAGCATGCGAGGGA
GGATGAGGCAGAGTTGGAGGGATTAAGGGAGGAAGTGAGGACGTTGCGGG
ATTTGTTAGCGTCGTCAACGAAGGCTTTGCATTGCTTGGGAGGGAGGGCA
GAGAGGAAACCAGGCATGGAGGCGGAGCAGGAACAAATAACAGGAAATCC
TCACATACCGTTGTCACTGTCTTTTCCAAAGCCCGAGTTCACACAACCAT
CACTATCACGGCCGGTGGCGATGCCGCCACTCACGTGTGCCCCGCTCATG
CCGATGCCGCCGCCTACATTCCTGTCATTGCCTGTGGCCTGCCACCTGCC
CCCGTCACCACTTCGATATCCACCTCATTTCGCTTCATCATCTGTTGCCC
CCTCTTCATTCAACCCTTCCTCTTCTTCATCCTGCTCCTCCTCCTCCTCG
ACTGCGATTGAATCGGCCATGCGTGCGTACGAGACGGAGGTACAAAAACT
GCAAGAGGTGCACGATGAATTCCTTATCCTGCATGGGAGAGGAAGCGATG
ATTCTGTTACCGCTGCTACCGCTGCTACCGCTGCTGTTGCTACTGCAGCA
GGCGCGGTCAAGAAGCAGGTGGATAGCGATGAAGCGGAGGAAAGGGAGGT
GGCTGAGGACGTGTGTGTGGGTGAAAAGTGA

Synonyms

Publications