jgi.p|Nanoce1779_2|585269, mRNA_3305 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|585269
Unique Name	mRNA_3305
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1094
Alignment location	scaffold_7:1153671..1154764 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	585355
Track	FilteredModels2
ProteinId	585269

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:1153671..1154764 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585269	gene_3305	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585269	mRNA_3305-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3305	CDS_3305	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:1153671..1154764+
coding sequence from alignment at scaffold_7:1153671..1154764+

mRNA sequence

>mRNA_3305 ID=mRNA_3305|Name=jgi.p|Nanoce1779_2|585269|organism=Nannochloropsis oceanica|type=mRNA|length=1094bp
AGGCATCAGTGCCCAATCAAGGTGCAGCACACCGCAACCCGATCGCGCCC
ACAAGTGTAGCGCTTTTGGACCACGTCGAAAGCAACACACGGCAAGTGCG
ATGCGGGGCAACGTTTGGGGCTCCTTTTCCCATGCTTGCAGCGCTATTCC
CATGGGCTGGCCATCCCACTGGCACCTCTACCACGGCAAGCTGAACGCCG
ATGCAGAGGCCTATGCCTCCGCGATCTGGCGCACGATGCCCTCTTTCTCG
CCTTGAGAGCCGATCCATAATGACCGCATAAAAGGAAGGTGTTCATTTTC
CCCTTTTACGACCTCTAACAGTTCTCTTCCACACCCCTGCACTCAACTAT
TCCCACCACAGATCAACTATGTTCAAGCAACTCTTTTTCTTGGCCGCTTT
CCTGGCTGTGCTAGCCCAGGCGTTCGTGCCCCAGACTGCCCTCCCCAAGA
AGCATCTCTCCTTTTCATCCTCCGCTGCTGCTACCGCCGCTTGCCGGCCG
CAACGACAACAAATGAATGTGCCCTTTGTGGCGCTTATGGCCAAGATGAC
TGCTGAGGAGGAGGAAGAGGCCCGCAAGCTAACCTTTCAGAACAACCAAC
GCTCCCGCAAAGGACGCACCACGGACGAGGACGGCAAGTCCAACATCTGG
GCATACGACCGAAAGGAAGAGGTGGAGGTTGGCAAGGGCAACGGTATCAT
CATTGTGGGTGTGCTGATCGCCATTTTCCTTGGTGCCTTGACCTTCCTGC
CCACCATCCAATTCCCCAGCTACGATTAAGCGTCAGACCACACATGACTC
TGACAAGACAGATGTGACAGTGTGCTCTCTTTGTGTAGTGCGTGATTTCC
ATGTTCCCCCGCTTTCCTCCTCCTCCTTCTCCTTTTCCTACTTGTCATGC
TCATTTGAGATTTTAAATTAAGCCCGAAAGCAACGCTGTCACCGCCGGGT
AGTGGTGGAACAAGATGAGACAGGAGCTCCATACCTCGAAAGTAGATCAA
AAAACTACCAAAAATAGGGAACTTGTGTCTTGTCAGCAACGAACGAAGAA
AGAGATGAAAGATGAAGAAGAAACGTTTACCGCGCATCTAGATA

protein sequence of jgi.p|Nanoce1779_2|585269

>mRNA_3305-protein ID=mRNA_3305-protein|Name=jgi.p|Nanoce1779_2|585269|organism=Nannochloropsis oceanica|type=polypeptide|length=137bp
MFKQLFFLAAFLAVLAQAFVPQTALPKKHLSFSSSAAATAACRPQRQQMN
VPFVALMAKMTAEEEEEARKLTFQNNQRSRKGRTTDEDGKSNIWAYDRKE
EVEVGKGNGIIIVGVLIAIFLGALTFLPTIQFPSYD*

mRNA from alignment at scaffold_7:1153671..1154764+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3305 ID=mRNA_3305|Name=jgi.p|Nanoce1779_2|585269|organism=Nannochloropsis oceanica|type=mRNA|length=1094bp|location=Sequence derived from alignment at scaffold_7:1153671..1154764+ (Nannochloropsis oceanica)
AGGCATCAGTGCCCAATCAAGGTGCAGCACACCGCAACCCGATCGCGCCC
ACAAGTGTAGCGCTTTTGGACCACGTCGAAAGCAACACACGGCAAGTGCG
ATGCGGGGCAACGTTTGGGGCTCCTTTTCCCATGCTTGCAGCGCTATTCC
CATGGGCTGGCCATCCCACTGGCACCTCTACCACGGCAAGCTGAACGCCG
ATGCAGAGGCCTATGCCTCCGCGATCTGGCGCACGATGCCCTCTTTCTCG
CCTTGAGAGCCGATCCATAATGACCGCATAAAAGGAAGGTGTTCATTTTC
CCCTTTTACGACCTCTAACAGTTCTCTTCCACACCCCTGCACTCAACTAT
TCCCACCACAGATCAACTATGTTCAAGCAACTCTTTTTCTTGGCCGCTTT
CCTGGCTGTGCTAGCCCAGGCGTTCGTGCCCCAGACTGCCCTCCCCAAGA
AGCATCTCTCCTTTTCATCCTCCGCTGCTGCTACCGCCGCTTGCCGGCCG
CAACGACAACAAATGAATGTGCCCTTTGTGGCGCTTATGGCCAAGATGAC
TGCTGAGGAGGAGGAAGAGGCCCGCAAGCTAACCTTTCAGAACAACCAAC
GCTCCCGCAAAGGACGCACCACGGACGAGGACGGCAAGTCCAACATCTGG
GCATACGACCGAAAGGAAGAGGTGGAGGTTGGCAAGGGCAACGGTATCAT
CATTGTGGGTGTGCTGATCGCCATTTTCCTTGGTGCCTTGACCTTCCTGC
CCACCATCCAATTCCCCAGCTACGATTAAGCGTCAGACCACACATGACTC
TGACAAGACAGATGTGACAGTGTGCTCTCTTTGTGTAGTGCGTGATTTCC
ATGTTCCCCCGCTTTCCTCCTCCTCCTTCTCCTTTTCCTACTTGTCATGC
TCATTTGAGATTTTAAATTAAGCCCGAAAGCAACGCTGTCACCGCCGGGT
AGTGGTGGAACAAGATGAGACAGGAGCTCCATACCTCGAAAGTAGATCAA
AAAACTACCAAAAATAGGGAACTTGTGTCTTGTCAGCAACGAACGAAGAA
AGAGATGAAAGATGAAGAAGAAACGTTTACCGCGCATCTAGATA

Coding sequence (CDS) from alignment at scaffold_7:1153671..1154764+

>mRNA_3305 ID=mRNA_3305|Name=jgi.p|Nanoce1779_2|585269|organism=Nannochloropsis oceanica|type=CDS|length=411bp|location=Sequence derived from alignment at scaffold_7:1153671..1154764+ (Nannochloropsis oceanica)
ATGTTCAAGCAACTCTTTTTCTTGGCCGCTTTCCTGGCTGTGCTAGCCCA
GGCGTTCGTGCCCCAGACTGCCCTCCCCAAGAAGCATCTCTCCTTTTCAT
CCTCCGCTGCTGCTACCGCCGCTTGCCGGCCGCAACGACAACAAATGAAT
GTGCCCTTTGTGGCGCTTATGGCCAAGATGACTGCTGAGGAGGAGGAAGA
GGCCCGCAAGCTAACCTTTCAGAACAACCAACGCTCCCGCAAAGGACGCA
CCACGGACGAGGACGGCAAGTCCAACATCTGGGCATACGACCGAAAGGAA
GAGGTGGAGGTTGGCAAGGGCAACGGTATCATCATTGTGGGTGTGCTGAT
CGCCATTTTCCTTGGTGCCTTGACCTTCCTGCCCACCATCCAATTCCCCA
GCTACGATTAA

Synonyms

Publications