jgi.p|Nanoce1779_2|585260, mRNA_3303 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|585260
Unique Name	mRNA_3303
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1171
Alignment location	scaffold_7:1150321..1151730 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	585346
Track	FilteredModels2
ProteinId	585260

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:1150321..1151730 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585260	gene_3303	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585260	mRNA_3303-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3303	CDS_3303	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:1150321..1151730+
coding sequence from alignment at scaffold_7:1150321..1151730+

mRNA sequence

>mRNA_3303 ID=mRNA_3303|Name=jgi.p|Nanoce1779_2|585260|organism=Nannochloropsis oceanica|type=mRNA|length=1171bp
ACGACAGATATGAGCAGACATACCGCGGCGTCGCGGGCCTTGCAGCACTA
TACGTCAATGGCCCAGACAGAGGACAAAGAGAACGCGGGGCAGGTCGCTT
GGCTCCGCGAGGAAAATGACTACTACGACGATGAGGATGAGCAGCCTAGG
TCCCTGTTTTGTGGGGGCGGCATGGGTGCCTTGTGTGCGGCGATCCATCA
TTTGCATCCCCACGAGGCAGCGACCCCTGCTGCAGCAAAGAAGAAAGAGT
ACATGCAGCAACAACATGTCAGTAACGAAGAAGGAATACCATCCAGCGAA
ATACTAGAGCATGCGACGGCCTTGGACGAGGTGATCGTCAAAGAGCAAGA
AGAGGAGGGTGAGGAGGAGATAGCTGTGGAGATTGATATGCACGCGTCCG
CGGCACGACAGCAACTGCAACCTATCTCTCGATCATGCTTGCAGGGACAC
GACGACGTCTACACCGCAGCTGGAGACAATTGTCGAAGGACCCGTTCCTT
TTCTTCTTCCTTTCTCCTTCCTCCTTCCCTTCCTACCACTACCCTACTAA
CCGAAATGCGGGCAACGTTGCGCGGCACACGTCCTGCTCCTCCTCCTCCT
CCTTCTCCTCCTTCTCCTCCTTCTCCTGCTGCTCGTGCTGCTTCTTCTAC
CGCTGGAACTGCTCTTGGCAAAATCAATTCTATTTTGCATCTTCCTCCTA
CCCGCCAACAGCATCAACAGCCAAACCCAAAGCAAGGACAACGTCTTCGC
GCCATTCCCGCCTCTCAAAAATTCGTGCTATGTATGTCATGTAGCAACGA
AGAGTGGCTTCAAGTGCCACAGACAGCCAAGTACGTGCGTTGTCCCATCT
GCACCAGCATAACCATTGCTCTTACTTCCAATACTCGATTCCCGGTGAGA
GAGGAAAGGAGGACGGGGGGGGGTCCCTGCACACGGTTGATGACTTTTTT
TTCGATGCTTCAAGGGGGGGGAGGGGGGCCGGCGTCATTATAAGAGGGAA
GAAGGAAGTCAGGGAGTCAGGGAGGAAAGGCAAAATATAATAAAAGAGGT
TTGAGTGGTGTACAGACGTGTGGCCAATGGGGTTAAGGCAAGTGACTTGG
AATGTGTGTACGTGTGAGTATGTGTGTGTGTGTGGAATGATATGAAGCTG
AAGGAACGAAGGGGGGGACGA

protein sequence of jgi.p|Nanoce1779_2|585260

>mRNA_3303-protein ID=mRNA_3303-protein|Name=jgi.p|Nanoce1779_2|585260|organism=Nannochloropsis oceanica|type=polypeptide|length=328bp
MSRHTAASRALQHYTSMAQTEDKENAGQVAWLREENDYYDDEDEQPRSLF
CGGGMGALCAAIHHLHPHEAATPAAAKKKEYMQQQHVSNEEGIPSSEILE
HATALDEVIVKEQEEEGEEEIAVEIDMHASAARQQLQPISRSCLQGHDDV
YTAAGDNCRRTRSFSSSFLLPPSLPTTTLLTEMRATLRGTRPAPPPPPSP
PSPPSPAARAASSTAGTALGKINSILHLPPTRQQHQQPNPKQGQRLRAIP
ASQKFVLCMSCSNEEWLQVPQTAKYVRCPICTSITIALTSNTRFPVREER
RTGGGPCTRLMTFFSMLQGGGGGPASL*

mRNA from alignment at scaffold_7:1150321..1151730+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3303 ID=mRNA_3303|Name=jgi.p|Nanoce1779_2|585260|organism=Nannochloropsis oceanica|type=mRNA|length=1410bp|location=Sequence derived from alignment at scaffold_7:1150321..1151730+ (Nannochloropsis oceanica)
ACGACAGATATGAGCAGACATACCGCGGCGTCGCGGGCCTTGCAGCACTA
TACGTCAATGGCCCAGACAGAGGACAAAGAGAACGCGGGGCAGGTCGCTT
GGCTCGTAAGTATATGTGCAACCTGAGCTCGCACGACTCTAGCTATCTAT
TCCACATCATTTAGGATTATAGAACATATACCCTTGGCACAAACATCTGT
TACGTATGTTTCTCATAAATTACAGATTTATGGATACGATTTTAGACAGA
GCTTTTCCCTACCTTCCAAGAAAGAGGCCCCCTATTCACGTTCTCTCTCT
TTATCCAACCCACCCAACCAACCGACATCTTGCTTTTACTACAGCGCGAG
GAAAATGACTACTACGACGATGAGGATGAGCAGCCTAGGTCCCTGTTTTG
TGGGGGCGGCATGGGTGCCTTGTGTGCGGCGATCCATCATTTGCATCCCC
ACGAGGCAGCGACCCCTGCTGCAGCAAAGAAGAAAGAGTACATGCAGCAA
CAACATGTCAGTAACGAAGAAGGAATACCATCCAGCGAAATACTAGAGCA
TGCGACGGCCTTGGACGAGGTGATCGTCAAAGAGCAAGAAGAGGAGGGTG
AGGAGGAGATAGCTGTGGAGATTGATATGCACGCGTCCGCGGCACGACAG
CAACTGCAACCTATCTCTCGATCATGCTTGCAGGGACACGACGACGTCTA
CACCGCAGCTGGAGACAATTGTCGAAGGACCCGTTCCTTTTCTTCTTCCT
TTCTCCTTCCTCCTTCCCTTCCTACCACTACCCTACTAACCGAAATGCGG
GCAACGTTGCGCGGCACACGTCCTGCTCCTCCTCCTCCTCCTTCTCCTCC
TTCTCCTCCTTCTCCTGCTGCTCGTGCTGCTTCTTCTACCGCTGGAACTG
CTCTTGGCAAAATCAATTCTATTTTGCATCTTCCTCCTACCCGCCAACAG
CATCAACAGCCAAACCCAAAGCAAGGACAACGTCTTCGCGCCATTCCCGC
CTCTCAAAAATTCGTGCTATGTATGTCATGTAGCAACGAAGAGTGGCTTC
AAGTGCCACAGACAGCCAAGTACGTGCGTTGTCCCATCTGCACCAGCATA
ACCATTGCTCTTACTTCCAATACTCGATTCCCGGTGAGAGAGGAAAGGAG
GACGGGGGGGGGTCCCTGCACACGGTTGATGACTTTTTTTTCGATGCTTC
AAGGGGGGGGAGGGGGGCCGGCGTCATTATAAGAGGGAAGAAGGAAGTCA
GGGAGTCAGGGAGGAAAGGCAAAATATAATAAAAGAGGTTTGAGTGGTGT
ACAGACGTGTGGCCAATGGGGTTAAGGCAAGTGACTTGGAATGTGTGTAC
GTGTGAGTATGTGTGTGTGTGTGGAATGATATGAAGCTGAAGGAACGAAG
GGGGGGACGA

Coding sequence (CDS) from alignment at scaffold_7:1150321..1151730+

>mRNA_3303 ID=mRNA_3303|Name=jgi.p|Nanoce1779_2|585260|organism=Nannochloropsis oceanica|type=CDS|length=1968bp|location=Sequence derived from alignment at scaffold_7:1150321..1151730+ (Nannochloropsis oceanica)
ATGAGCAGACATACCGCGGCGTCGCGGGCCTTGCAGCACTATACGTCAAT
GGCCCAGACAGAGGACAAAGAGAACGCGGGGCAGGTCGCTTGGCTCCGCG
AGGAAAATGACTACTACGACGATGAGGATGAGCAGCCTAGGTCCCTGTTT
TGTGGGGGCGGCATGGGTGCCTTGTGTGCGGCGATCCATCATTTGCATCC
CCACGAGGCAGCGACCCCTGCTGCAGCAAAGAAGAAAGAGTACATGCAGC
AACAACATGTCAGTAACGAAGAAGGAATACCATCCAGCGAAATACTAGAG
CATGCGACGGCCTTGGACGAGGTGATCGTCAAAGAGCAAGAAGAGGAGGG
TGAGGAGGAGATAGCTGTGGAGATTGATATGCACGCGTCCGCGGCACGAC
AGCAACTGCAACCTATCTCTCGATCATGCTTGCAGGGACACGACGACGTC
TACACCGCAGCTGGAGACAATTGTCGAAGGACCCGTTCCTTTTCTTCTTC
CTTTCTCCTTCCTCCTTCCCTTCCTACCACTACCCTACTAACCGAAATGC
GGGCAACGTTGCGCGGCACACGTCCTGCTCCTCCTCCTCCTCCTTCTCCT
CCTTCTCCTCCTTCTCCTGCTGCTCGTGCTGCTTCTTCTACCGCTGGAAC
TGCTCTTGGCAAAATCAATTCTATTTTGCATCTTCCTCCTACCCGCCAAC
AGCATCAACAGCCAAACCCAAAGCAAGGACAACGTCTTCGCGCCATTCCC
GCCTCTCAAAAATTCGTGCTATGTATGTCATGTAGCAACGAAGAGTGGCT
TCAAGTGCCACAGACAGCCAAGTACGTGCGTTGTCCCATCTGCACCAGCA
TAACCATTGCTCTTACTTCCAATACTCGATTCCCGGTGAGAGAGGAAAGG
AGGACGGGGGGGGGTCCCTGCACACGGTTGATGACTTTTTTTTCGATGCT
TCAAGGGGGGGGAGGGGGGCCGGCGTCATTATAAATGAGCAGACATACCG
CGGCGTCGCGGGCCTTGCAGCACTATACGTCAATGGCCCAGACAGAGGAC
AAAGAGAACGCGGGGCAGGTCGCTTGGCTCCGCGAGGAAAATGACTACTA
CGACGATGAGGATGAGCAGCCTAGGTCCCTGTTTTGTGGGGGCGGCATGG
GTGCCTTGTGTGCGGCGATCCATCATTTGCATCCCCACGAGGCAGCGACC
CCTGCTGCAGCAAAGAAGAAAGAGTACATGCAGCAACAACATGTCAGTAA
CGAAGAAGGAATACCATCCAGCGAAATACTAGAGCATGCGACGGCCTTGG
ACGAGGTGATCGTCAAAGAGCAAGAAGAGGAGGGTGAGGAGGAGATAGCT
GTGGAGATTGATATGCACGCGTCCGCGGCACGACAGCAACTGCAACCTAT
CTCTCGATCATGCTTGCAGGGACACGACGACGTCTACACCGCAGCTGGAG
ACAATTGTCGAAGGACCCGTTCCTTTTCTTCTTCCTTTCTCCTTCCTCCT
TCCCTTCCTACCACTACCCTACTAACCGAAATGCGGGCAACGTTGCGCGG
CACACGTCCTGCTCCTCCTCCTCCTCCTTCTCCTCCTTCTCCTCCTTCTC
CTGCTGCTCGTGCTGCTTCTTCTACCGCTGGAACTGCTCTTGGCAAAATC
AATTCTATTTTGCATCTTCCTCCTACCCGCCAACAGCATCAACAGCCAAA
CCCAAAGCAAGGACAACGTCTTCGCGCCATTCCCGCCTCTCAAAAATTCG
TGCTATGTATGTCATGTAGCAACGAAGAGTGGCTTCAAGTGCCACAGACA
GCCAAGTACGTGCGTTGTCCCATCTGCACCAGCATAACCATTGCTCTTAC
TTCCAATACTCGATTCCCGGTGAGAGAGGAAAGGAGGACGGGGGGGGGTC
CCTGCACACGGTTGATGACTTTTTTTTCGATGCTTCAAGGGGGGGGAGGG
GGGCCGGCGTCATTATAA

Synonyms

Publications