jgi.p|Nanoce1779_2|553935, mRNA_3299 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|553935
Unique Name	mRNA_3299
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1805
Alignment location	scaffold_7:1141274..1143281 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	554021
Track	FilteredModels2
ProteinId	553935

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:1141274..1143281 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|553935	gene_3299	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|553935	mRNA_3299-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3299	CDS_3299	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:1141274..1143281+
coding sequence from alignment at scaffold_7:1141274..1143281+

mRNA sequence

>mRNA_3299 ID=mRNA_3299|Name=jgi.p|Nanoce1779_2|553935|organism=Nannochloropsis oceanica|type=mRNA|length=1805bp
ATGAAAGGAGGGTGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
AGGGGGTGAGCAGCAACAGCACCAGCACCACCAGTACCCGGTGATTGTAA
TCGGGTCATGCGATTCGGTGGAGGATCTAGCAGAGCCCATTCGTCGATGT
TTCTCGTACGAGCTAGCCTTACCCCTACCTGACGACGCTCGTCGAAGTCA
GATCCTTCGCCACACCCTCCGACGGCTCTCTTGCACCTTTTCCCCTTCCT
CCTCTTCCTCCTCTTCCTCCCTCCCCTCCCACCTCTTCCGCCTTGCCCCT
CCCTTGGACCTGCCCTACCTCATCCGAAGCACCGCCGGGCGAACACCCGC
AGAGATTATCTCTCTTCTCGAACATGCCACCCAACAAGCCCTCCTCCGCC
CTCCCGCCCTCCCCATTGACGTCACACAAGCCGACATTTCAACGGCCGAG
AAGGCGTTGACCGCCATCCTTCCCTCCGTCCTTGGTGCCGCTCCTCCCAA
GATACCCTCAGTATACTGGTCGGATATTGGCGGTCTCGCCAACGTCCGGG
ATGAGATTCTCGACGTGATTGAACTGCCGCTCAAACATCCGGAAATCTTC
GCCACGGGCGTCAAACGCCGCGCAGGGATCTTGCTCTACGGCCCGCCGGG
GACAGGGAAGACACTTCTAGCCAAGGCAGTGGCCACCGAATGCGGCCTTG
CCTTTCTATCAGTCAAAGGCCCGGAGCTCTTAGACATGTACATTGGAGAG
AGCGAGCGTAATGTCCGGGCGGTTTTCGCCCAAGCCCGAGCGGCTGCCCC
TTCCGTGTTATTTTTTGATGAGCTCGATTCGCTAGCACCTCAGAGGGGGA
GGGGGAGTGACAGTGGAGGGGTGATGGACAGAGTAGTGTCACAGCTCTTG
GTCGAGCTCGATGGTGTGTCCACGGGCGGGGGGGAGGAAGGGAGGGAAGG
GAGGAGGAAGGACGTGTTTGTGATCGGCGCGACGAACCGTCCCGATCTTC
TCGACGCCTCCTTATTGAGACCCGGGAGATTCGACCGACTGCTGTACCTG
GGGAACTCTCAAGACCCCGCCAATCGCCTCTCCATCATGCAAGCCAGCAC
GCGCAAGTTCCGCCTTGCCCCCGACGTGGACCTGAGCGAGGTGGTGGCCC
ACGTACCGGCTACATGCACGGGCGCGGATTTCTCGGCGGTGGCGGCACAG
GCACTCATGCGCGCCTTGAAGCGGAGGGTGGCAGAACTGGAGGAAGAGCT
GGGAGTCTTGAACGAGGAAGAGGGGGAGGGAGGGAAGGACGAAGGCGTGT
TGTCGTTGAGGACATTTTTGGGCCAGCTGGCTCCTGAGGAGTTGGAGGCC
AGGGTGAAGCAGGAGGACTTTCTGGCAGCAGCAGAAGCAGTGAATCCCTC
GGTGACTCACGAAGAGTTGCAGCATTACGAGAAGCTGCGGGCACAATTCA
GCAGTCACCACGTGGCGGGCCCTTCCTGCCTTCCCTCGTCCTTGCCCGTG
GGAAGCAAAGGTGCTGGTGGTGGTCTTGGTCATGATGCTGCTGCTGCTGG
GGCTGCTGCTGGGGCTGCTGGTGCTGGCACTGATGGGCAGGTAATGCCTC
TCGGGTTGGGAGGAGGTTTGACAAAGGGGGTGCTGGAGAGGCCAAAGGGG
AAGATTGGAGAGAGAGATGGTGGTGTAGAAAGAGCCACGGAGAATGGAGA
AAGAAGATGAGGATAAGGAGAGGGAGGAGGGGGAGGAGGAAGCGGGGAGA
ATGGAGAAGGAGGAAAAGGAGAGGGACGAGGAGGAGGAGGAGGAGGAGGA
GGAGG

protein sequence of jgi.p|Nanoce1779_2|553935

>mRNA_3299-protein ID=mRNA_3299-protein|Name=jgi.p|Nanoce1779_2|553935|organism=Nannochloropsis oceanica|type=polypeptide|length=570bp
MKGGWGGREGGREGGREGGEQQQHQHHQYPVIVIGSCDSVEDLAEPIRRC
FSYELALPLPDDARRSQILRHTLRRLSCTFSPSSSSSSSSLPSHLFRLAP
PLDLPYLIRSTAGRTPAEIISLLEHATQQALLRPPALPIDVTQADISTAE
KALTAILPSVLGAAPPKIPSVYWSDIGGLANVRDEILDVIELPLKHPEIF
ATGVKRRAGILLYGPPGTGKTLLAKAVATECGLAFLSVKGPELLDMYIGE
SERNVRAVFAQARAAAPSVLFFDELDSLAPQRGRGSDSGGVMDRVVSQLL
VELDGVSTGGGEEGREGRRKDVFVIGATNRPDLLDASLLRPGRFDRLLYL
GNSQDPANRLSIMQASTRKFRLAPDVDLSEVVAHVPATCTGADFSAVAAQ
ALMRALKRRVAELEEELGVLNEEEGEGGKDEGVLSLRTFLGQLAPEELEA
RVKQEDFLAAAEAVNPSVTHEELQHYEKLRAQFSSHHVAGPSCLPSSLPV
GSKGAGGGLGHDAAAAGAAAGAAGAGTDGQVMPLGLGGGLTKGVLERPKG
KIGERDGGVERATENGERR*

mRNA from alignment at scaffold_7:1141274..1143281+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3299 ID=mRNA_3299|Name=jgi.p|Nanoce1779_2|553935|organism=Nannochloropsis oceanica|type=mRNA|length=2008bp|location=Sequence derived from alignment at scaffold_7:1141274..1143281+ (Nannochloropsis oceanica)
ATGAAAGGAGGGTGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
AGGGGGTGAGCAGCAACAGCACCAGCACCACCAGTACCCGGTGATTGTAA
TCGGGTCATGCGATTCGGTGGAGGATCTAGCAGAGCCCATTCGTCGATGT
TTCTCGTACGAGCTAGCCTTACCCCTACCTGACGACGCTCGTCGAAGTCA
GATCCTTCGCCACACCCTCCGACGGCTCTCTTGCACCTTTTCCCCTTCCT
CCTCTTCCTCCTCTTCCTCCCTCCCCTCCCACCTCTTCCGCCTTGCCCCT
CCCTTGGACCTGCCCTACCTCATCCGAAGCACCGCCGGGCGAACACCCGC
AGAGATTATCTCTCTTCTCGAACATGCCACCCAACAAGCCCTCCTCCGCC
CTCCCGCCCTCCCCATTGACGTCACACAAGCCGACATTTCAACGGCCGAG
AAGGCGTTGACCGCCATCCTTCCCTCCGTCCTTGGTGCCGCTCCTCCCAA
GATACCCTCAGTATACTGGTCGGATATTGGCGGTCTCGCCAACGTCCGGG
ATGAGATTCTCGACGTGATTGAACTGCCGCTCAAACATCCGGGTACGTTG
GACGGCTTGATTTCCTCCCTCCGTCCCTGCCTGCTTGCCTGCCTCCCTCT
TCCCCACCCTCTTTTCATCCTTCCCTCCTCTCGCCCTCTCTCCCTCATTC
CATCCCTCCCTCCCTCCCGTGCTCCTCTCTTTCGTCCTCCCTACAATCTT
AATCCCTCTCTCACCACTCCTTTCCTCCCTCCCTCTCTCCCTCAGAAATC
TTCGCCACGGGCGTCAAACGCCGCGCAGGGATCTTGCTCTACGGCCCGCC
GGGGACAGGGAAGACACTTCTAGCCAAGGCAGTGGCCACCGAATGCGGCC
TTGCCTTTCTATCAGTCAAAGGCCCGGAGCTCTTAGACATGTACATTGGA
GAGAGCGAGCGTAATGTCCGGGCGGTTTTCGCCCAAGCCCGAGCGGCTGC
CCCTTCCGTGTTATTTTTTGATGAGCTCGATTCGCTAGCACCTCAGAGGG
GGAGGGGGAGTGACAGTGGAGGGGTGATGGACAGAGTAGTGTCACAGCTC
TTGGTCGAGCTCGATGGTGTGTCCACGGGCGGGGGGGAGGAAGGGAGGGA
AGGGAGGAGGAAGGACGTGTTTGTGATCGGCGCGACGAACCGTCCCGATC
TTCTCGACGCCTCCTTATTGAGACCCGGGAGATTCGACCGACTGCTGTAC
CTGGGGAACTCTCAAGACCCCGCCAATCGCCTCTCCATCATGCAAGCCAG
CACGCGCAAGTTCCGCCTTGCCCCCGACGTGGACCTGAGCGAGGTGGTGG
CCCACGTACCGGCTACATGCACGGGCGCGGATTTCTCGGCGGTGGCGGCA
CAGGCACTCATGCGCGCCTTGAAGCGGAGGGTGGCAGAACTGGAGGAAGA
GCTGGGAGTCTTGAACGAGGAAGAGGGGGAGGGAGGGAAGGACGAAGGCG
TGTTGTCGTTGAGGACATTTTTGGGCCAGCTGGCTCCTGAGGAGTTGGAG
GCCAGGGTGAAGCAGGAGGACTTTCTGGCAGCAGCAGAAGCAGTGAATCC
CTCGGTGACTCACGAAGAGTTGCAGCATTACGAGAAGCTGCGGGCACAAT
TCAGCAGTCACCACGTGGCGGGCCCTTCCTGCCTTCCCTCGTCCTTGCCC
GTGGGAAGCAAAGGTGCTGGTGGTGGTCTTGGTCATGATGCTGCTGCTGC
TGGGGCTGCTGCTGGGGCTGCTGGTGCTGGCACTGATGGGCAGGTAATGC
CTCTCGGGTTGGGAGGAGGTTTGACAAAGGGGGTGCTGGAGAGGCCAAAG
GGGAAGATTGGAGAGAGAGATGGTGGTGTAGAAAGAGCCACGGAGAATGG
AGAAAGAAGATGAGGATAAGGAGAGGGAGGAGGGGGAGGAGGAAGCGGGG
AGAATGGAGAAGGAGGAAAAGGAGAGGGACGAGGAGGAGGAGGAGGAGGA
GGAGGAGG

Coding sequence (CDS) from alignment at scaffold_7:1141274..1143281+

>mRNA_3299 ID=mRNA_3299|Name=jgi.p|Nanoce1779_2|553935|organism=Nannochloropsis oceanica|type=CDS|length=3420bp|location=Sequence derived from alignment at scaffold_7:1141274..1143281+ (Nannochloropsis oceanica)
ATGAAAGGAGGGTGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
AGGGGGTGAGCAGCAACAGCACCAGCACCACCAGTACCCGGTGATTGTAA
TCGGGTCATGCGATTCGGTGGAGGATCTAGCAGAGCCCATTCGTCGATGT
TTCTCGTACGAGCTAGCCTTACCCCTACCTGACGACGCTCGTCGAAGTCA
GATCCTTCGCCACACCCTCCGACGGCTCTCTTGCACCTTTTCCCCTTCCT
CCTCTTCCTCCTCTTCCTCCCTCCCCTCCCACCTCTTCCGCCTTGCCCCT
CCCTTGGACCTGCCCTACCTCATCCGAAGCACCGCCGGGCGAACACCCGC
AGAGATTATCTCTCTTCTCGAACATGCCACCCAACAAGCCCTCCTCCGCC
CTCCCGCCCTCCCCATTGACGTCACACAAGCCGACATTTCAACGGCCGAG
AAGGCGTTGACCGCCATCCTTCCCTCCGTCCTTGGTGCCGCTCCTCCCAA
GATACCCTCAGTATACTGGTCGGATATTGGCGGTCTCGCCAACGTCCGGG
ATGAGATTCTCGACGTGATTGAACTGCCGCTCAAACATCCGGAAATCTTC
GCCACGGGCGTCAAACGCCGCGCAGGGATCTTGCTCTACGGCCCGCCGGG
GACAGGGAAGACACTTCTAGCCAAGGCAGTGGCCACCGAATGCGGCCTTG
CCTTTCTATCAGTCAAAGGCCCGGAGCTCTTAGACATGTACATTGGAGAG
AGCGAGCGTAATGTCCGGGCGGTTTTCGCCCAAGCCCGAGCGGCTGCCCC
TTCCGTGTTATTTTTTGATGAGCTCGATTCGCTAGCACCTCAGAGGGGGA
GGGGGAGTGACAGTGGAGGGGTGATGGACAGAGTAGTGTCACAGCTCTTG
GTCGAGCTCGATGGTGTGTCCACGGGCGGGGGGGAGGAAGGGAGGGAAGG
GAGGAGGAAGGACGTGTTTGTGATCGGCGCGACGAACCGTCCCGATCTTC
TCGACGCCTCCTTATTGAGACCCGGGAGATTCGACCGACTGCTGTACCTG
GGGAACTCTCAAGACCCCGCCAATCGCCTCTCCATCATGCAAGCCAGCAC
GCGCAAGTTCCGCCTTGCCCCCGACGTGGACCTGAGCGAGGTGGTGGCCC
ACGTACCGGCTACATGCACGGGCGCGGATTTCTCGGCGGTGGCGGCACAG
GCACTCATGCGCGCCTTGAAGCGGAGGGTGGCAGAACTGGAGGAAGAGCT
GGGAGTCTTGAACGAGGAAGAGGGGGAGGGAGGGAAGGACGAAGGCGTGT
TGTCGTTGAGGACATTTTTGGGCCAGCTGGCTCCTGAGGAGTTGGAGGCC
AGGGTGAAGCAGGAGGACTTTCTGGCAGCAGCAGAAGCAGTGAATCCCTC
GGTGACTCACGAAGAGTTGCAGCATTACGAGAAGCTGCGGGCACAATTCA
GCAGTCACCACGTGGCGGGCCCTTCCTGCCTTCCCTCGTCCTTGCCCGTG
GGAAGCAAAGGTGCTGGTGGTGGTCTTGGTCATGATGCTGCTGCTGCTGG
GGCTGCTGCTGGGGCTGCTGGTGCTGGCACTGATGGGCAGGTAATGCCTC
TCGGGTTGGGAGGAGGTTTGACAAAGGGGGTGCTGGAGAGGCCAAAGGGG
AAGATTGGAGAGAGAGATGGTGGTGTAGAAAGAGCCACGGAGAATGGAGA
AAGAAGATGAATGAAAGGAGGGTGGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAAGGGGGTGAGCAGCAACAGCACCAGCACCACCAGTACCCG
GTGATTGTAATCGGGTCATGCGATTCGGTGGAGGATCTAGCAGAGCCCAT
TCGTCGATGTTTCTCGTACGAGCTAGCCTTACCCCTACCTGACGACGCTC
GTCGAAGTCAGATCCTTCGCCACACCCTCCGACGGCTCTCTTGCACCTTT
TCCCCTTCCTCCTCTTCCTCCTCTTCCTCCCTCCCCTCCCACCTCTTCCG
CCTTGCCCCTCCCTTGGACCTGCCCTACCTCATCCGAAGCACCGCCGGGC
GAACACCCGCAGAGATTATCTCTCTTCTCGAACATGCCACCCAACAAGCC
CTCCTCCGCCCTCCCGCCCTCCCCATTGACGTCACACAAGCCGACATTTC
AACGGCCGAGAAGGCGTTGACCGCCATCCTTCCCTCCGTCCTTGGTGCCG
CTCCTCCCAAGATACCCTCAGTATACTGGTCGGATATTGGCGGTCTCGCC
AACGTCCGGGATGAGATTCTCGACGTGATTGAACTGCCGCTCAAACATCC
GGAAATCTTCGCCACGGGCGTCAAACGCCGCGCAGGGATCTTGCTCTACG
GCCCGCCGGGGACAGGGAAGACACTTCTAGCCAAGGCAGTGGCCACCGAA
TGCGGCCTTGCCTTTCTATCAGTCAAAGGCCCGGAGCTCTTAGACATGTA
CATTGGAGAGAGCGAGCGTAATGTCCGGGCGGTTTTCGCCCAAGCCCGAG
CGGCTGCCCCTTCCGTGTTATTTTTTGATGAGCTCGATTCGCTAGCACCT
CAGAGGGGGAGGGGGAGTGACAGTGGAGGGGTGATGGACAGAGTAGTGTC
ACAGCTCTTGGTCGAGCTCGATGGTGTGTCCACGGGCGGGGGGGAGGAAG
GGAGGGAAGGGAGGAGGAAGGACGTGTTTGTGATCGGCGCGACGAACCGT
CCCGATCTTCTCGACGCCTCCTTATTGAGACCCGGGAGATTCGACCGACT
GCTGTACCTGGGGAACTCTCAAGACCCCGCCAATCGCCTCTCCATCATGC
AAGCCAGCACGCGCAAGTTCCGCCTTGCCCCCGACGTGGACCTGAGCGAG
GTGGTGGCCCACGTACCGGCTACATGCACGGGCGCGGATTTCTCGGCGGT
GGCGGCACAGGCACTCATGCGCGCCTTGAAGCGGAGGGTGGCAGAACTGG
AGGAAGAGCTGGGAGTCTTGAACGAGGAAGAGGGGGAGGGAGGGAAGGAC
GAAGGCGTGTTGTCGTTGAGGACATTTTTGGGCCAGCTGGCTCCTGAGGA
GTTGGAGGCCAGGGTGAAGCAGGAGGACTTTCTGGCAGCAGCAGAAGCAG
TGAATCCCTCGGTGACTCACGAAGAGTTGCAGCATTACGAGAAGCTGCGG
GCACAATTCAGCAGTCACCACGTGGCGGGCCCTTCCTGCCTTCCCTCGTC
CTTGCCCGTGGGAAGCAAAGGTGCTGGTGGTGGTCTTGGTCATGATGCTG
CTGCTGCTGGGGCTGCTGCTGGGGCTGCTGGTGCTGGCACTGATGGGCAG
GTAATGCCTCTCGGGTTGGGAGGAGGTTTGACAAAGGGGGTGCTGGAGAG
GCCAAAGGGGAAGATTGGAGAGAGAGATGGTGGTGTAGAAAGAGCCACGG
AGAATGGAGAAAGAAGATGA

Synonyms

Publications