jgi.p|Nanoce1779_2|585235, mRNA_3297 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585235
Unique NamemRNA_3297
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length936
Alignment locationscaffold_7:1135249..1136685 +

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Properties
Property NameValue
TranscriptId585321
TrackFilteredModels2
ProteinId585235
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:1135249..1136685 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585235gene_3297Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585235mRNA_3297-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3297CDS_3297Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3297 ID=mRNA_3297|Name=jgi.p|Nanoce1779_2|585235|organism=Nannochloropsis oceanica|type=mRNA|length=936bp
AAAAAACAGTCATATGCGTGCCTTGCAACACTTTACCCGGACGGCGTCGT
GCCTCTGCGTCATTCCCGCCTCTGCTTTTGTCAGCGGCTTCGTCCGACCT
CCCCCTCGCAACAGCTGCAGCATGGCCTCCTCTGCCTCCGCCACGCGCCG
TGGCCTCACCACCATGAATATCAAGCCCGCTGACGTCTTAAAAGACCCCA
AGTGGCCCGAGGAGGCCTTCTTCCGCGCGACTGATTTCCAACGGCAAGAC
GAGTCGACCGACACTTCGTTTTACAGCAGTCCCCGCTTTGTCACGCACAT
CGATGACCCGGCAATCAAAGCTCTGACCGATTACTACGCGGTTGCCTTCC
CTCCCAATGCTGAAGTTCTCGACATCTGTTCGTCGTGGATCTCGCATTAC
CCAGAGGGAGCCAAGCGAAAGCGGACAGTTGGCATGGGAATGAATGAGGC
TGAGCTTGCCAAAAATAAGCAGCTGGATGAGTACGTCGTCAAGGACCTGA
ACGTGGACCCCACCCTTCCCTTTTGCGACGAGAGCTTCGACGTAGTGACC
TGTGTAGTTAGTGTGGATTACCTTATTAAACCTCTGGAAGTCTTCGCGGA
GATCTCGCGTGTGCTGAAACCAGGAGGATTATGCATCATGAGCATGAGCA
ATAGATGTTTCCCGACCAAGGCGATCTCTATCTGGTTGGAGACTGGGGAT
GCGGGTCATGTTTTCATCGTCGGCGCGTACTTCCATTATGGCAGTAAGGA
TTTCGAGGCCCCTAAATGTGTTGATATAAGCCCTAATCCCGGGCGGAGCG
ATCCCATGTTTATTGTTCAGGCGGCCAAGAAGATGGAGAAGGCGGCTGCA
TAATGGAAGGAGGGATAGAAGGATGGAGGGGAGGGTGAGGAAAATAAGGC
AAGAAAAACAAAGAAAAGGACGAAGTTAAGAAGTGT
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protein sequence of jgi.p|Nanoce1779_2|585235

>mRNA_3297-protein ID=mRNA_3297-protein|Name=jgi.p|Nanoce1779_2|585235|organism=Nannochloropsis oceanica|type=polypeptide|length=280bp
MRALQHFTRTASCLCVIPASAFVSGFVRPPPRNSCSMASSASATRRGLTT
MNIKPADVLKDPKWPEEAFFRATDFQRQDESTDTSFYSSPRFVTHIDDPA
IKALTDYYAVAFPPNAEVLDICSSWISHYPEGAKRKRTVGMGMNEAELAK
NKQLDEYVVKDLNVDPTLPFCDESFDVVTCVVSVDYLIKPLEVFAEISRV
LKPGGLCIMSMSNRCFPTKAISIWLETGDAGHVFIVGAYFHYGSKDFEAP
KCVDISPNPGRSDPMFIVQAAKKMEKAAA*
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mRNA from alignment at scaffold_7:1135249..1136685+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3297 ID=mRNA_3297|Name=jgi.p|Nanoce1779_2|585235|organism=Nannochloropsis oceanica|type=mRNA|length=1437bp|location=Sequence derived from alignment at scaffold_7:1135249..1136685+ (Nannochloropsis oceanica)
AAAAAACAGTCATATGCGTGCCTTGCAACACTTTACCCGGACGGCGTCGT
GCCTCTGCGTCATTCCCGCCTCTGCTTTTGTCAGCGGCTTCGTCCGACCT
CCCCCTCGCAACAGCTGCAGCATGGCCTCCTCTGCCTCCGCCACGCGCCG
TGGCCTCACCACCATGAATATCAAGCCCGCTGACGTCTTAAAAGACCCCA
AGTGGCCCGAGGAGGCCTTCTTCCGCGCGACTGATTTCCAACGGCAAGAC
GAGTCGACCGACACTTCGTTTTACAGCAGTCCCCGCTTTGTCACGCACAT
CGATGACCCGGCAATCAAAGCTCTGACCGGTAATGATTTGGCTTGGGCAG
GTCCTTTGCTTTTTCCTTGTGATACCTCTTCTACCTGTTGTACGCTTCAT
TCTGTGATTGTCGTGTTGATCGCCGGGTAGATGGGTTTCGGACTTTGGGC
TCGTCATCCCTTCCTCCATCCATCTCTCATGCCCGTCTGTCGCCCCTCCT
TGCCTCTTCTCTAGATTACTACGCGGTTGCCTTCCCTCCCAATGCTGAAG
TTCTCGACATCTGTTCGTCGTGGATCTCGCATTACCCAGAGGGAGCCAAG
CGAAAGCGGACAGTTGGCATGGGAATGAATGAGGCTGAGCTTGCCAAAAA
TAAGCAGCTGGATGAGTACGTCGTCAAGGTATGGCCTCGGATAGGATCGT
TTCCTTCATTCCTTCATGCGAGCCCCCGTATTGATAAATTGGCGATTGAC
TTTGCTTCCTTCCCCTGCCTCTCTCCCTCCCTCCCTCCCTCTACCCCAGG
ACCTGAACGTGGACCCCACCCTTCCCTTTTGCGACGAGAGCTTCGACGTA
GTGACCTGTGTAGTTAGTGTGGATTACCTTATTAAACCTCTGGAAGTCTT
CGCGGAGATCTCGCGTGTGCTGAAACCAGGAGGATTATGCATCATGAGCA
TGAGCAATAGATGTTTCCCGACCAAGGCGATCTCTATCTGGTTGGAGACT
GGGGATGCGGGTCATGTTTTCATCGTGTGAGTAGGGGAAGGAGGGCAGGG
GGGATGGAGAGTTGAGAAGGGGAGGGGAGGGACAGGAGTTCATACCTTCT
TTAATAGCCGAGGACCCACAATTATGTATCAGTTACCTAACGGCCGCTGC
TCGTCCATTCGAAATTTGAAGACGTCACACCTCACAACCGTTCCTTCCTT
CCCTATCCCTCACCCCAAAAGCGGCGCGTACTTCCATTATGGCAGTAAGG
ATTTCGAGGCCCCTAAATGTGTTGATATAAGCCCTAATCCCGGGCGGAGC
GATCCCATGTTTATTGTTCAGGCGGCCAAGAAGATGGAGAAGGCGGCTGC
ATAATGGAAGGAGGGATAGAAGGATGGAGGGGAGGGTGAGGAAAATAAGG
CAAGAAAAACAAAGAAAAGGACGAAGTTAAGAAGTGT
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Coding sequence (CDS) from alignment at scaffold_7:1135249..1136685+

>mRNA_3297 ID=mRNA_3297|Name=jgi.p|Nanoce1779_2|585235|organism=Nannochloropsis oceanica|type=CDS|length=3360bp|location=Sequence derived from alignment at scaffold_7:1135249..1136685+ (Nannochloropsis oceanica)
ATGCGTGCCTTGCAACACTTTACCCGGACGGCGTCGTGCCTCTGCGTCAT
TCCCGCCTCTGCTTTTGTCAGCGGCTTCGTCCGACCTCCCCCTCGCAACA
GCTGCAGCATGGCCTCCTCTGCCTCCGCCACGCGCCGTGGCCTCACCACC
ATGAATATCAAGCCCGCTGACGTCTTAAAAGACCCCAAGTGGCCCGAGGA
GGCCTTCTTCCGCGCGACTGATTTCCAACGGCAAGACGAGTCGACCGACA
CTTCGTTTTACAGCAGTCCCCGCTTTGTCACGCACATCGATGACCCGGCA
ATCAAAGCTCTGACCGATTACTACGCGGTTGCCTTCCCTCCCAATGCTGA
AGTTCTCGACATCTGTTCGTCGTGGATCTCGCATTACCCAGAGGGAGCCA
AGCGAAAGCGGACAGTTGGCATGGGAATGAATGAGGCTGAGCTTGCCAAA
AATAAGCAGCTGGATGAGTACGTCGTCAAGGACCTGAACGTGGACCCCAC
CCTTCCCTTTTGCGACGAGAGCTTCGACGTAGTGACCTGTGTAGTTAGTG
TGGATTACCTTATTAAACCTCTGGAAGTCTTCGCGGAGATCTCGCGTGTG
CTGAAACCAGGAGGATTATGCATCATGAGCATGAGCAATAGATGTTTCCC
GACCAAGGCGATCTCTATCTGGTTGGAGACTGGGGATGCGGGTCATGTTT
TCATCGTCGGCGCGTACTTCCATTATGGCAGTAAGGATTTCGAGGCCCCT
AAATGTGTTGATATAAGCCCTAATCCCGGGCGGAGCGATCCCATGTTTAT
TGTTCAGGCGGCCAAGAAGATGGAGAAGGCGGCTGCATAAATGCGTGCCT
TGCAACACTTTACCCGGACGGCGTCGTGCCTCTGCGTCATTCCCGCCTCT
GCTTTTGTCAGCGGCTTCGTCCGACCTCCCCCTCGCAACAGCTGCAGCAT
GGCCTCCTCTGCCTCCGCCACGCGCCGTGGCCTCACCACCATGAATATCA
AGCCCGCTGACGTCTTAAAAGACCCCAAGTGGCCCGAGGAGGCCTTCTTC
CGCGCGACTGATTTCCAACGGCAAGACGAGTCGACCGACACTTCGTTTTA
CAGCAGTCCCCGCTTTGTCACGCACATCGATGACCCGGCAATCAAAGCTC
TGACCGATTACTACGCGGTTGCCTTCCCTCCCAATGCTGAAGTTCTCGAC
ATCTGTTCGTCGTGGATCTCGCATTACCCAGAGGGAGCCAAGCGAAAGCG
GACAGTTGGCATGGGAATGAATGAGGCTGAGCTTGCCAAAAATAAGCAGC
TGGATGAGTACGTCGTCAAGGACCTGAACGTGGACCCCACCCTTCCCTTT
TGCGACGAGAGCTTCGACGTAGTGACCTGTGTAGTTAGTGTGGATTACCT
TATTAAACCTCTGGAAGTCTTCGCGGAGATCTCGCGTGTGCTGAAACCAG
GAGGATTATGCATCATGAGCATGAGCAATAGATGTTTCCCGACCAAGGCG
ATCTCTATCTGGTTGGAGACTGGGGATGCGGGTCATGTTTTCATCGTCGG
CGCGTACTTCCATTATGGCAGTAAGGATTTCGAGGCCCCTAAATGTGTTG
ATATAAGCCCTAATCCCGGGCGGAGCGATCCCATGTTTATTGTTCAGGCG
GCCAAGAAGATGGAGAAGGCGGCTGCATAAATGCGTGCCTTGCAACACTT
TACCCGGACGGCGTCGTGCCTCTGCGTCATTCCCGCCTCTGCTTTTGTCA
GCGGCTTCGTCCGACCTCCCCCTCGCAACAGCTGCAGCATGGCCTCCTCT
GCCTCCGCCACGCGCCGTGGCCTCACCACCATGAATATCAAGCCCGCTGA
CGTCTTAAAAGACCCCAAGTGGCCCGAGGAGGCCTTCTTCCGCGCGACTG
ATTTCCAACGGCAAGACGAGTCGACCGACACTTCGTTTTACAGCAGTCCC
CGCTTTGTCACGCACATCGATGACCCGGCAATCAAAGCTCTGACCGATTA
CTACGCGGTTGCCTTCCCTCCCAATGCTGAAGTTCTCGACATCTGTTCGT
CGTGGATCTCGCATTACCCAGAGGGAGCCAAGCGAAAGCGGACAGTTGGC
ATGGGAATGAATGAGGCTGAGCTTGCCAAAAATAAGCAGCTGGATGAGTA
CGTCGTCAAGGACCTGAACGTGGACCCCACCCTTCCCTTTTGCGACGAGA
GCTTCGACGTAGTGACCTGTGTAGTTAGTGTGGATTACCTTATTAAACCT
CTGGAAGTCTTCGCGGAGATCTCGCGTGTGCTGAAACCAGGAGGATTATG
CATCATGAGCATGAGCAATAGATGTTTCCCGACCAAGGCGATCTCTATCT
GGTTGGAGACTGGGGATGCGGGTCATGTTTTCATCGTCGGCGCGTACTTC
CATTATGGCAGTAAGGATTTCGAGGCCCCTAAATGTGTTGATATAAGCCC
TAATCCCGGGCGGAGCGATCCCATGTTTATTGTTCAGGCGGCCAAGAAGA
TGGAGAAGGCGGCTGCATAAATGCGTGCCTTGCAACACTTTACCCGGACG
GCGTCGTGCCTCTGCGTCATTCCCGCCTCTGCTTTTGTCAGCGGCTTCGT
CCGACCTCCCCCTCGCAACAGCTGCAGCATGGCCTCCTCTGCCTCCGCCA
CGCGCCGTGGCCTCACCACCATGAATATCAAGCCCGCTGACGTCTTAAAA
GACCCCAAGTGGCCCGAGGAGGCCTTCTTCCGCGCGACTGATTTCCAACG
GCAAGACGAGTCGACCGACACTTCGTTTTACAGCAGTCCCCGCTTTGTCA
CGCACATCGATGACCCGGCAATCAAAGCTCTGACCGATTACTACGCGGTT
GCCTTCCCTCCCAATGCTGAAGTTCTCGACATCTGTTCGTCGTGGATCTC
GCATTACCCAGAGGGAGCCAAGCGAAAGCGGACAGTTGGCATGGGAATGA
ATGAGGCTGAGCTTGCCAAAAATAAGCAGCTGGATGAGTACGTCGTCAAG
GACCTGAACGTGGACCCCACCCTTCCCTTTTGCGACGAGAGCTTCGACGT
AGTGACCTGTGTAGTTAGTGTGGATTACCTTATTAAACCTCTGGAAGTCT
TCGCGGAGATCTCGCGTGTGCTGAAACCAGGAGGATTATGCATCATGAGC
ATGAGCAATAGATGTTTCCCGACCAAGGCGATCTCTATCTGGTTGGAGAC
TGGGGATGCGGGTCATGTTTTCATCGTCGGCGCGTACTTCCATTATGGCA
GTAAGGATTTCGAGGCCCCTAAATGTGTTGATATAAGCCCTAATCCCGGG
CGGAGCGATCCCATGTTTATTGTTCAGGCGGCCAAGAAGATGGAGAAGGC
GGCTGCATAA
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Synonyms
Publications