jgi.p|Nanoce1779_2|585224, mRNA_3295 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585224
Unique NamemRNA_3295
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length662
Alignment locationscaffold_7:1128981..1129642 +

Link to JBrowse

Properties
Property NameValue
TranscriptId585310
TrackFilteredModels2
ProteinId585224
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:1128981..1129642 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585224gene_3295Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585224mRNA_3295-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3295CDS_3295Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3295 ID=mRNA_3295|Name=jgi.p|Nanoce1779_2|585224|organism=Nannochloropsis oceanica|type=mRNA|length=662bp
CGCCCCCCTAGAACCAGCACACACACGCGCGCGCACACACACCATGCATG
TATTGCAGAAATGTCATTCGCTTGCTTTCCCTCACTACATTTTCGCTTTC
CCTCACAACGTTTTCGCTTTCCCTTCTTTCACTCCATACAATGTGTGGGG
GCGTCAAATCAGGAGCAGCTTCAGAGAAAGGAGACTAAAAGCAGGAGGAA
AACGTCTAAGCCCGTGCGGCATGCAATTATACTCCTTCCTTCCCTCCTTC
CCTTCTTCTCTCCCTTCCTCTCTCCCTTCACACTTACAAAAAATCTAACG
CCCCCACACAAACATATACAAATAGTCATCTTTCCTCCCTCGCCCTCCCT
TCCTCCCTCCTTCTCCCCTTTCCTTCCCCTAGAAAAAGCCAAACACAGAC
TGTACCGCACACACACCCTCCGCCTCCACCAACTCCCTCCCTCTCCCTCG
CTTCTTCGTGGTTGCTTGAAACCTATCAGGGACCCCACACGCAGCAAGGC
AAATCTTTTCCTCTACATCCTTTATTCCCTCCTTTTTCAACACGGCGTCG
CTCCACCAAAATCCGCCCTCCTCCTCCACTTCCTCCTCCACTTCCTCCTC
CTCCTCCTCCACCTCCTCCTCCCAATAACCATCGTCTTCTTCCTCTGACC
ACCAATCACCGC
back to top

protein sequence of jgi.p|Nanoce1779_2|585224

>mRNA_3295-protein ID=mRNA_3295-protein|Name=jgi.p|Nanoce1779_2|585224|organism=Nannochloropsis oceanica|type=polypeptide|length=196bp
MSFACFPSLHFRFPSQRFRFPFFHSIQCVGASNQEQLQRKETKSRRKTSK
PVRHAIILLPSLLPFFSPFLSPFTLTKNLTPPHKHIQIVIFPPSPSLPPS
FSPFLPLEKAKHRLYRTHTLRLHQLPPSPSLLRGCLKPIRDPTRSKANLF
LYILYSLLFQHGVAPPKSALLLHFLLHFLLLLLHLLLPITIVFFL*
back to top

mRNA from alignment at scaffold_7:1128981..1129642+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3295 ID=mRNA_3295|Name=jgi.p|Nanoce1779_2|585224|organism=Nannochloropsis oceanica|type=mRNA|length=662bp|location=Sequence derived from alignment at scaffold_7:1128981..1129642+ (Nannochloropsis oceanica)
CGCCCCCCTAGAACCAGCACACACACGCGCGCGCACACACACCATGCATG
TATTGCAGAAATGTCATTCGCTTGCTTTCCCTCACTACATTTTCGCTTTC
CCTCACAACGTTTTCGCTTTCCCTTCTTTCACTCCATACAATGTGTGGGG
GCGTCAAATCAGGAGCAGCTTCAGAGAAAGGAGACTAAAAGCAGGAGGAA
AACGTCTAAGCCCGTGCGGCATGCAATTATACTCCTTCCTTCCCTCCTTC
CCTTCTTCTCTCCCTTCCTCTCTCCCTTCACACTTACAAAAAATCTAACG
CCCCCACACAAACATATACAAATAGTCATCTTTCCTCCCTCGCCCTCCCT
TCCTCCCTCCTTCTCCCCTTTCCTTCCCCTAGAAAAAGCCAAACACAGAC
TGTACCGCACACACACCCTCCGCCTCCACCAACTCCCTCCCTCTCCCTCG
CTTCTTCGTGGTTGCTTGAAACCTATCAGGGACCCCACACGCAGCAAGGC
AAATCTTTTCCTCTACATCCTTTATTCCCTCCTTTTTCAACACGGCGTCG
CTCCACCAAAATCCGCCCTCCTCCTCCACTTCCTCCTCCACTTCCTCCTC
CTCCTCCTCCACCTCCTCCTCCCAATAACCATCGTCTTCTTCCTCTGACC
ACCAATCACCGC
back to top

Coding sequence (CDS) from alignment at scaffold_7:1128981..1129642+

>mRNA_3295 ID=mRNA_3295|Name=jgi.p|Nanoce1779_2|585224|organism=Nannochloropsis oceanica|type=CDS|length=588bp|location=Sequence derived from alignment at scaffold_7:1128981..1129642+ (Nannochloropsis oceanica)
ATGTCATTCGCTTGCTTTCCCTCACTACATTTTCGCTTTCCCTCACAACG
TTTTCGCTTTCCCTTCTTTCACTCCATACAATGTGTGGGGGCGTCAAATC
AGGAGCAGCTTCAGAGAAAGGAGACTAAAAGCAGGAGGAAAACGTCTAAG
CCCGTGCGGCATGCAATTATACTCCTTCCTTCCCTCCTTCCCTTCTTCTC
TCCCTTCCTCTCTCCCTTCACACTTACAAAAAATCTAACGCCCCCACACA
AACATATACAAATAGTCATCTTTCCTCCCTCGCCCTCCCTTCCTCCCTCC
TTCTCCCCTTTCCTTCCCCTAGAAAAAGCCAAACACAGACTGTACCGCAC
ACACACCCTCCGCCTCCACCAACTCCCTCCCTCTCCCTCGCTTCTTCGTG
GTTGCTTGAAACCTATCAGGGACCCCACACGCAGCAAGGCAAATCTTTTC
CTCTACATCCTTTATTCCCTCCTTTTTCAACACGGCGTCGCTCCACCAAA
ATCCGCCCTCCTCCTCCACTTCCTCCTCCACTTCCTCCTCCTCCTCCTCC
ACCTCCTCCTCCCAATAACCATCGTCTTCTTCCTCTGA
back to top
Synonyms
Publications