jgi.p|Nanoce1779_2|585212, mRNA_3291 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|585212
Unique Name	mRNA_3291
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2564
Alignment location	scaffold_7:1119906..1122821 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	585298
Track	FilteredModels2
ProteinId	585212

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:1119906..1122821 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585212	gene_3291	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585212	mRNA_3291-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3291	CDS_3291	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:1119906..1122821+
coding sequence from alignment at scaffold_7:1119906..1122821+

mRNA sequence

>mRNA_3291 ID=mRNA_3291|Name=jgi.p|Nanoce1779_2|585212|organism=Nannochloropsis oceanica|type=mRNA|length=2564bp
AACAGGCTCCGCACGCGCACGTAGCTGCAATTTTCCGGAAGCCAGGCTCA
TCTGGGTGACCTTCACGCGACACTCGAAAATCCACCTCGTCGTCGTATTG
TCATGCTCCCCACCACACGCCGCTTCTCCTGCACTTTCTCCCTCCTCTTT
GTGCTGCTCTGTATCAGCACCACGAGCAGCACGGCCTTCTTCCTCTCCTC
CTCCGCTCCTCAGCCTGGGCCCCAACCCGCCGTAACCCGCACCGCGCTGT
CCGCCACGCCATCCTCCTCCACCGACCAAACCTCAGTCCACGGCAACTGG
CTTCGTGCCGCCTCCTTCCTTGCCCTCACCCTCCTTCCAAGCACTTTGGC
TAGTCCCGCGGGTGCCTTTGATGCCAAGGGCGTTAAGCTCTTTGAGAACA
ACTGCGCAAGTTGCCACGTGGGGGGAGGTAATATTATCGGATACGCCCGC
GGGAAGACTTTGAAAGAAGAAGCCCTGGTCAAAAATAAAGTCGCCAGCCG
GGCCGCCATTGTCTCCATGCTACAACAAGGCAAAGGTGTGATGCCTAAGT
ACGGGAGCTACACACGCAAGAACGGTGACGTTGTTCCGGCTAAATTGTCG
GAGCAGGAGATGGGGATTGTGGCTGATTATGTGTTAGAGCAGGCTAAGGC
CGGGTGGAAGTAGTGAGTGGGATCTCTCAAGCTCCCATTCTTTCCTGCTG
ATCATCGCCATACTGATCATTATGCTCGCCAGGCGCGTTTCCCTGCGTGC
TCCCTCCCGAAAGAATAGAACCAAAGCGGCTGCAGCGTCAGCAGTCAGGG
TTACTGGGGTCCCAGGAGCGCACGTACCCGGAGACTGGAGAATCGAGGAG
AAGGAGAAGAAAGAAAAGGAATAGAAGAAGACGACAAAGGAGAAGAGGGA
AAAGCTCAGCTATCCAGACATTCAGATAGATATTTAAATATAAATAGAGG
TGTACCGCACACACACATATAAATCCGCTTGCTTTAGGAAGTGCAGTGTG
ACTAACGACGACGAAAACCATGCCCTGTCGCAGACAGCCGCAAAACTTAA
AATAAAAAACCGAAAGCCGGTAATTTTCCTCCTCAACATTGAACTGAGCC
GCGCAAGGAAACAAAAGAGAAAGACCGTGAAGAACGAGAGTCGCGAGTGT
TCAGGAAAAAGTCTCGCATCCGAAAGTCAGAATTCCTTATTTTCATTCCT
CACTCAGGACACTTACTCCTTCCATCCCTCCCTCTTTCCTTCCCTCCCAG
CTCCCACGCCACAGGGAAGGGCCGGATTTACGCAGGAGCATCACATTTAA
AACGACGGCACCTCTTGCCTTGGCCACCAAAAAGACATGCACCCAGCCAC
CTCCTACCACCACCATCCGCCCTCCTCCTACCTCCCCTCTTCCGTCCACT
CCTCCACCCACAACCCCTCTTCCTCCTCCTTTTCCCCCCTGTCCGAGTCC
AAAGATCTCCTCCATTCCTACTACCTGTCCCACCAGCCCAATGCCCTCGA
CCCTCGTTTCCTGAATCCCGCCCTCCCCCCCGCCCTCATCCCATGCTGCT
GCCCCCTCTGCTTACGCGTGCGCGCCTCCCCTTCGCTCTTCCTTGCCCCC
GATCGCTCACATCAACTCTTGGTCATCATGCAAGGCCCACCGGGATCGGG
CAAGACGACACTGGCCCATCAAATAGTCAAGAGAGTGCAGGCCCCGCCGG
GCGGCATGGTGATATGCTCCACCGACACCTACTCCCTGACAAGGGATGGG
AGGTACATATGGAATCCGGCCACGCTCGAGGAGAATCATGGGAAGAATCT
AGAGCGCGCCAAGGCCTTTCTGGACGAAGGACGAAGCGTCATTGTCGACA
ACACCAACATCCAAGCATGGCAGCCGAGGGAATACGTCCGTCACGCCATC
CGCCTGGGGGTCCAAGTCGAGTTTGTGCGGGCCTCGGGGAAATTTAATAA
CGTCCACGGAGTGCCGTTGGAAAAAGTGGAGAAAATGAGGTCTGTTGTAA
AGGCTTTGGAACGGCATGGGAGGGAAGAAGGAATGTAATTCATTGGTGGC
TCTCTTCCCGCTATTCTGACCTCGCCTTGTCCGCCTTCGTTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTGTAGGCAAACCATGGAGGTACTCACGATGGA
GAGCGTGTTAAACTCATTGGCACCAGCAGAAAGGAGAGGGCTGCGAGGGG
AGGGAGGGAGAGAGGAAATGAGGGAGGCAGGGCGGATGGCGGCGATGCAA
GGACCGTTATTTTCCCTCCCGGGAGGGGGGAGGGGAAGAGGGGTTGGCGG
AGGAAGGGGGAGAGGGAGGGGGGACTTACGGGAGGAGAGGCTGGAACGAT
CATTGGCAAGGATGCAGATCGGGAGGTGAGGAAGGGAAGGATGGAGGGAA
GAAAGGAGGGAAAGGAATCGTAGGGATCTCGAAGACACCGCCAAAGCACT
TTAGTGAGTGAGGAAAGCAATAGATGGAATTTACGGACAGCGCATGTTGT
AGTGATAGCAAAGACGTCAGAAGGAACGTTGGGGTGGATTACGTCATCCA
CTCCCCTCCCGCAA

protein sequence of jgi.p|Nanoce1779_2|585212

>mRNA_3291-protein ID=mRNA_3291-protein|Name=jgi.p|Nanoce1779_2|585212|organism=Nannochloropsis oceanica|type=polypeptide|length=234bp
MHPATSYHHHPPSSYLPSSVHSSTHNPSSSSFSPLSESKDLLHSYYLSHQ
PNALDPRFLNPALPPALIPCCCPLCLRVRASPSLFLAPDRSHQLLVIMQG
PPGSGKTTLAHQIVKRVQAPPGGMVICSTDTYSLTRDGRYIWNPATLEEN
HGKNLERAKAFLDEGRSVIVDNTNIQAWQPREYVRHAIRLGVQVEFVRAS
GKFNNVHGVPLEKVEKMRSVVKALERHGREEGM*

mRNA from alignment at scaffold_7:1119906..1122821+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3291 ID=mRNA_3291|Name=jgi.p|Nanoce1779_2|585212|organism=Nannochloropsis oceanica|type=mRNA|length=2916bp|location=Sequence derived from alignment at scaffold_7:1119906..1122821+ (Nannochloropsis oceanica)
AACAGGCTCCGCACGCGCACGTAGCTGCAATTTTCCGGAAGCCAGGCTCA
TCTGGGTGACCTTCACGCGACACTCGAAAATCCACCTCGTCGTCGTATTG
TCATGCTCCCCACCACACGCCGCTTCTCCTGCACTTTCTCCCTCCTCTTT
GTGCTGCTCTGTATCAGCACCACGAGCAGCACGGCCTTCTTCCTCTCCTC
CTCCGCTCCTCAGCCTGGGCCCCAACCCGCCGTAACCCGCACCGCGCTGT
CCGCCACGCCATCCTCCTCCACCGACCAAACCTCAGTCCACGGCAACTGG
CTTCGTGCCGCCTCCTTCCTTGCCCTCACCCTCCTTCCAAGCACTTTGGC
TAGTCCCGCGGGTGCCTTTGATGCCAAGGGCGTTAAGCTCTTTGAGAACA
ACTGCGCAAGTTGCCACGTGGGGGGAGGTAATATTATCGGGTAGGTGCTT
GGGAGGAAGGAGGAACACGGAAAGTGAGAGATGGATGGATGGATGGTTTG
GTAGGGACGTATGGTGTCTCCGACTTTTTCTGCGTCGGACCTCTATATCT
ATTACATGTTGTGGGCATGCATCCCATTTATTCTTGACCCTCTTACACCC
TTCCTTCTCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCAGATACGCCC
GCGGGAAGACTTTGAAAGAAGAAGCCCTGGTCAAAAATAAAGTCGCCAGC
CGGGCCGCCATTGTCTCCATGCTACAACAAGGCAAAGGTGTGATGCCTAA
GTACGGGAGCTACACACGCAAGAACGGTGACGTTGTTCCGGCTAAATTGT
CGGAGCAGGAGATGGGGATTGTGGCTGATTATGTGTTAGAGCAGGCTAAG
GCCGGGTGGAAGTAGTGAGTGGGATCTCTCAAGCTCCCATTCTTTCCTGC
TGATCATCGCCATACTGATCATTATGCTCGCCAGGCGCGTTTCCCTGCGT
GCTCCCTCCCGAAAGAATAGAACCAAAGCGGCTGCAGCGTCAGCAGTCAG
GGTTACTGGGGTCCCAGGAGCGCACGTACCCGGAGACTGGAGAATCGAGG
AGAAGGAGAAGAAAGAAAAGGAATAGAAGAAGACGACAAAGGAGAAGAGG
GAAAAGCTCAGCTATCCAGACATTCAGATAGATATTTAAATATAAATAGA
GGTGTACCGCACACACACATATAAATCCGCTTGCTTTAGGAAGTGCAGTG
TGACTAACGACGACGAAAACCATGCCCTGTCGCAGACAGCCGCAAAACTT
AAAATAAAAAACCGAAAGCCGGTAATTTTCCTCCTCAACATTGAACTGAG
CCGCGCAAGGAAACAAAAGAGAAAGACCGTGAAGAACGAGAGTCGCGAGT
GTTCAGGAAAAAGTCTCGCATCCGAAAGTCAGAATTCCTTATTTTCATTC
CTCACTCAGGACACTTACTCCTTCCATCCCTCCCTCTTTCCTTCCCTCCC
AGCTCCCACGCCACAGGGAAGGGCCGGATTTACGCAGGAGCATCACATTT
AAAACGACGGCACCTCTTGCCTTGGCCACCAAAAAGACATGCACCCAGCC
ACCTCCTACCACCACCATCCGCCCTCCTCCTACCTCCCCTCTTCCGTCCA
CTCCTCCACCCACAACCCCTCTTCCTCCTCCTTTTCCCCCCTGTCCGAGT
CCAAAGATCTCCTCCATTCCTACTACCTGTCCCACCAGCCCAATGCCCTC
GACCCTCGTTTCCTGAATCCCGCCCTCCCCCCCGCCCTCATCCCATGCTG
CTGCCCCCTCTGCTTACGCGTGCGCGCCTCCCCTTCGCTCTTCCTTGCCC
CCGATCGCTCACATCAACTCTTGGTCATCATGCAAGGCCCACCGGGATCG
GGCAAGACGACACTGGCCCATCAAATAGTCAAGAGAGTGCAGGCCCCGCC
GGGCGGCATGGTGATATGCTCCACCGACACCTACTCCCTGACAAGGGATG
GGAGGTACATATGGAATCCGGCCACGCTCGAGGAGAATCATGGGAAGAAT
CTAGGTATGCTGGGCGGGAGGGAGGGAGGGAGGGAGGGAGGGATTGGGGG
TCTGACGGTGGTTACTCATTTGATGACAGGCTCCATCACGTACTCACTTC
ACCCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCCCGCGCCC
ACAGAGCGCGCCAAGGCCTTTCTGGACGAAGGACGAAGCGTCATTGTCGA
CAACACCAACATCCAAGCATGGCAGCCGAGGGAATACGTCCGTCACGCCA
TCCGCCTGGGGGTCCAAGTCGAGTTTGTGCGGGCCTCGGGGAAATTTAAT
AACGTCCACGGAGTGCCGTTGGAAAAAGTGGAGAAAATGAGGTCTGTTGT
AAAGGCTTTGGAACGGCATGGGAGGGAAGAAGGAATGTAATTCATTGGTG
GCTCTCTTCCCGCTATTCTGACCTCGCCTTGTCCGCCTTCGTTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTGTAGGCAAACCATGGAGGTACTCACGATG
GAGAGCGTGTTAAACTCATTGGCACCAGCAGAAAGGAGAGGGCTGCGAGG
GGAGGGAGGGAGAGAGGAAATGAGGGAGGCAGGGCGGATGGCGGCGATGC
AAGGACCGTTATTTTCCCTCCCGGGAGGGGGGAGGGGAAGAGGGGTTGGC
GGAGGAAGGGGGAGAGGGAGGGGGGACTTACGGGAGGAGAGGCTGGAACG
ATCATTGGCAAGGATGCAGATCGGGAGGTGAGGAAGGGAAGGATGGAGGG
AAGAAAGGAGGGAAAGGAATCGTAGGGATCTCGAAGACACCGCCAAAGCA
CTTTAGTGAGTGAGGAAAGCAATAGATGGAATTTACGGACAGCGCATGTT
GTAGTGATAGCAAAGACGTCAGAAGGAACGTTGGGGTGGATTACGTCATC
CACTCCCCTCCCGCAA

Coding sequence (CDS) from alignment at scaffold_7:1119906..1122821+

>mRNA_3291 ID=mRNA_3291|Name=jgi.p|Nanoce1779_2|585212|organism=Nannochloropsis oceanica|type=CDS|length=1404bp|location=Sequence derived from alignment at scaffold_7:1119906..1122821+ (Nannochloropsis oceanica)
ATGCACCCAGCCACCTCCTACCACCACCATCCGCCCTCCTCCTACCTCCC
CTCTTCCGTCCACTCCTCCACCCACAACCCCTCTTCCTCCTCCTTTTCCC
CCCTGTCCGAGTCCAAAGATCTCCTCCATTCCTACTACCTGTCCCACCAG
CCCAATGCCCTCGACCCTCGTTTCCTGAATCCCGCCCTCCCCCCCGCCCT
CATCCCATGCTGCTGCCCCCTCTGCTTACGCGTGCGCGCCTCCCCTTCGC
TCTTCCTTGCCCCCGATCGCTCACATCAACTCTTGGTCATCATGCAAGGC
CCACCGGGATCGGGCAAGACGACACTGGCCCATCAAATAGTCAAGAGAGT
GCAGGCCCCGCCGGGCGGCATGGTGATATGCTCCACCGACACCTACTCCC
TGACAAGGGATGGGAGGTACATATGGAATCCGGCCACGCTCGAGGAGAAT
CATGGGAAGAATCTAGAGCGCGCCAAGGCCTTTCTGGACGAAGGACGAAG
CGTCATTGTCGACAACACCAACATCCAAGCATGGCAGCCGAGGGAATACG
TCCGTCACGCCATCCGCCTGGGGGTCCAAGTCGAGTTTGTGCGGGCCTCG
GGGAAATTTAATAACGTCCACGGAGTGCCGTTGGAAAAAGTGGAGAAAAT
GAGGTCTGTTGTAAAGGCTTTGGAACGGCATGGGAGGGAAGAAGGAATGT
AAATGCACCCAGCCACCTCCTACCACCACCATCCGCCCTCCTCCTACCTC
CCCTCTTCCGTCCACTCCTCCACCCACAACCCCTCTTCCTCCTCCTTTTC
CCCCCTGTCCGAGTCCAAAGATCTCCTCCATTCCTACTACCTGTCCCACC
AGCCCAATGCCCTCGACCCTCGTTTCCTGAATCCCGCCCTCCCCCCCGCC
CTCATCCCATGCTGCTGCCCCCTCTGCTTACGCGTGCGCGCCTCCCCTTC
GCTCTTCCTTGCCCCCGATCGCTCACATCAACTCTTGGTCATCATGCAAG
GCCCACCGGGATCGGGCAAGACGACACTGGCCCATCAAATAGTCAAGAGA
GTGCAGGCCCCGCCGGGCGGCATGGTGATATGCTCCACCGACACCTACTC
CCTGACAAGGGATGGGAGGTACATATGGAATCCGGCCACGCTCGAGGAGA
ATCATGGGAAGAATCTAGAGCGCGCCAAGGCCTTTCTGGACGAAGGACGA
AGCGTCATTGTCGACAACACCAACATCCAAGCATGGCAGCCGAGGGAATA
CGTCCGTCACGCCATCCGCCTGGGGGTCCAAGTCGAGTTTGTGCGGGCCT
CGGGGAAATTTAATAACGTCCACGGAGTGCCGTTGGAAAAAGTGGAGAAA
ATGAGGTCTGTTGTAAAGGCTTTGGAACGGCATGGGAGGGAAGAAGGAAT
GTAA

Synonyms

Publications