jgi.p|Nanoce1779_2|565046, mRNA_3290 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|565046
Unique NamemRNA_3290
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length561
Alignment locationscaffold_7:1120008..1120770 +

Link to JBrowse

Properties
Property NameValue
TranscriptId565132
TrackFilteredModels2
ProteinId565046
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:1120008..1120770 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565046gene_3290Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565046mRNA_3290-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3290CDS_3290Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3290 ID=mRNA_3290|Name=jgi.p|Nanoce1779_2|565046|organism=Nannochloropsis oceanica|type=mRNA|length=561bp
ATGCTCCCCACCACACGCCGCTTCTCCTGCACTTTCTCCCTCCTCTTTGT
GCTGCTCTGTATCAGCACCACGAGCAGCACGGCCTTCTTCCTCTCCTCCT
CCGCTCCTCAGCCTGGGCCCCAACCCGCCGTAACCCGCACCGCGCTGTCC
GCCACGCCATCCTCCTCCACCGACCAAACCTCAGTCCACGGCAACTGGCT
TCGTGCCGCCTCCTTCCTTGCCCTCACCCTCCTTCCAAGCACTTTGGCTA
GTCCCGCGGGTGCCTTTGATGCCAAGGGCGTTAAGCTCTTTGAGAACAAC
TGCGCAAGTTGCCACGTGGGGGGAGGTAATATTATCGGATACGCCCGCGG
GAAGACTTTGAAAGAAGAAGCCCTGGTCAAAAATAAAGTCGCCAGCCGGG
CCGCCATTGTCTCCATGCTACAACAAGGCAAAGGTGTGATGCCTAAGTAC
GGGAGCTACACACGCAAGAACGGTGACGTTGTTCCGGCTAAATTGTCGGA
GCAGGAGATGGGGATTGTGGCTGATTATGTGTTAGAGCAGGCTAAGGCCG
GGTGGAAGTAG
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protein sequence of jgi.p|Nanoce1779_2|565046

>mRNA_3290-protein ID=mRNA_3290-protein|Name=jgi.p|Nanoce1779_2|565046|organism=Nannochloropsis oceanica|type=polypeptide|length=187bp
MLPTTRRFSCTFSLLFVLLCISTTSSTAFFLSSSAPQPGPQPAVTRTALS
ATPSSSTDQTSVHGNWLRAASFLALTLLPSTLASPAGAFDAKGVKLFENN
CASCHVGGGNIIGYARGKTLKEEALVKNKVASRAAIVSMLQQGKGVMPKY
GSYTRKNGDVVPAKLSEQEMGIVADYVLEQAKAGWK*
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mRNA from alignment at scaffold_7:1120008..1120770+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3290 ID=mRNA_3290|Name=jgi.p|Nanoce1779_2|565046|organism=Nannochloropsis oceanica|type=mRNA|length=763bp|location=Sequence derived from alignment at scaffold_7:1120008..1120770+ (Nannochloropsis oceanica)
ATGCTCCCCACCACACGCCGCTTCTCCTGCACTTTCTCCCTCCTCTTTGT
GCTGCTCTGTATCAGCACCACGAGCAGCACGGCCTTCTTCCTCTCCTCCT
CCGCTCCTCAGCCTGGGCCCCAACCCGCCGTAACCCGCACCGCGCTGTCC
GCCACGCCATCCTCCTCCACCGACCAAACCTCAGTCCACGGCAACTGGCT
TCGTGCCGCCTCCTTCCTTGCCCTCACCCTCCTTCCAAGCACTTTGGCTA
GTCCCGCGGGTGCCTTTGATGCCAAGGGCGTTAAGCTCTTTGAGAACAAC
TGCGCAAGTTGCCACGTGGGGGGAGGTAATATTATCGGGTAGGTGCTTGG
GAGGAAGGAGGAACACGGAAAGTGAGAGATGGATGGATGGATGGTTTGGT
AGGGACGTATGGTGTCTCCGACTTTTTCTGCGTCGGACCTCTATATCTAT
TACATGTTGTGGGCATGCATCCCATTTATTCTTGACCCTCTTACACCCTT
CCTTCTCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCAGATACGCCCGC
GGGAAGACTTTGAAAGAAGAAGCCCTGGTCAAAAATAAAGTCGCCAGCCG
GGCCGCCATTGTCTCCATGCTACAACAAGGCAAAGGTGTGATGCCTAAGT
ACGGGAGCTACACACGCAAGAACGGTGACGTTGTTCCGGCTAAATTGTCG
GAGCAGGAGATGGGGATTGTGGCTGATTATGTGTTAGAGCAGGCTAAGGC
CGGGTGGAAGTAG
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Coding sequence (CDS) from alignment at scaffold_7:1120008..1120770+

>mRNA_3290 ID=mRNA_3290|Name=jgi.p|Nanoce1779_2|565046|organism=Nannochloropsis oceanica|type=CDS|length=1122bp|location=Sequence derived from alignment at scaffold_7:1120008..1120770+ (Nannochloropsis oceanica)
ATGCTCCCCACCACACGCCGCTTCTCCTGCACTTTCTCCCTCCTCTTTGT
GCTGCTCTGTATCAGCACCACGAGCAGCACGGCCTTCTTCCTCTCCTCCT
CCGCTCCTCAGCCTGGGCCCCAACCCGCCGTAACCCGCACCGCGCTGTCC
GCCACGCCATCCTCCTCCACCGACCAAACCTCAGTCCACGGCAACTGGCT
TCGTGCCGCCTCCTTCCTTGCCCTCACCCTCCTTCCAAGCACTTTGGCTA
GTCCCGCGGGTGCCTTTGATGCCAAGGGCGTTAAGCTCTTTGAGAACAAC
TGCGCAAGTTGCCACGTGGGGGGAGGTAATATTATCGGATACGCCCGCGG
GAAGACTTTGAAAGAAGAAGCCCTGGTCAAAAATAAAGTCGCCAGCCGGG
CCGCCATTGTCTCCATGCTACAACAAGGCAAAGGTGTGATGCCTAAGTAC
GGGAGCTACACACGCAAGAACGGTGACGTTGTTCCGGCTAAATTGTCGGA
GCAGGAGATGGGGATTGTGGCTGATTATGTGTTAGAGCAGGCTAAGGCCG
GGTGGAAGTAGATGCTCCCCACCACACGCCGCTTCTCCTGCACTTTCTCC
CTCCTCTTTGTGCTGCTCTGTATCAGCACCACGAGCAGCACGGCCTTCTT
CCTCTCCTCCTCCGCTCCTCAGCCTGGGCCCCAACCCGCCGTAACCCGCA
CCGCGCTGTCCGCCACGCCATCCTCCTCCACCGACCAAACCTCAGTCCAC
GGCAACTGGCTTCGTGCCGCCTCCTTCCTTGCCCTCACCCTCCTTCCAAG
CACTTTGGCTAGTCCCGCGGGTGCCTTTGATGCCAAGGGCGTTAAGCTCT
TTGAGAACAACTGCGCAAGTTGCCACGTGGGGGGAGGTAATATTATCGGA
TACGCCCGCGGGAAGACTTTGAAAGAAGAAGCCCTGGTCAAAAATAAAGT
CGCCAGCCGGGCCGCCATTGTCTCCATGCTACAACAAGGCAAAGGTGTGA
TGCCTAAGTACGGGAGCTACACACGCAAGAACGGTGACGTTGTTCCGGCT
AAATTGTCGGAGCAGGAGATGGGGATTGTGGCTGATTATGTGTTAGAGCA
GGCTAAGGCCGGGTGGAAGTAG
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Synonyms
Publications