jgi.p|Nanoce1779_2|636692, mRNA_329 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|636692
Unique NamemRNA_329
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length318
Alignment locationscaffold_3:815423..815852 +

Link to JBrowse

Properties
Property NameValue
TranscriptId636778
TrackFilteredModels2
ProteinId636692
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:815423..815852 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|636692gene_329Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|636692mRNA_329-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_329CDS_329Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_329 ID=mRNA_329|Name=jgi.p|Nanoce1779_2|636692|organism=Nannochloropsis oceanica|type=mRNA|length=318bp
ATGGCGTACGTAAGGAGCGACGGCACTGTGCTGGCCAAAAAGAGCTTTGT
GCAATCCATCACGGACGCGTTCTGGGGTTTTTGCAATGCTATTGGCTTAT
TCTTTTCCACATTCTCGCCATCCACGCGGGAGGAGCGACGTGCCCAGGCG
CTAGAACGCCGGGGTGCACGCAGAGGGGCGAGCAGCAGCAGCGTTGGGAC
CGGGGGCGGCGGAGGCAGCAACACGTTGCGACACCGGGGCGCCAACATTC
ACGGTCTACGTCAATCCTCTCAAGCCACGGTGCCGGGTGGAGGGTGCTCT
GGCGGGGGCTGTGGCTAA
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protein sequence of jgi.p|Nanoce1779_2|636692

>mRNA_329-protein ID=mRNA_329-protein|Name=jgi.p|Nanoce1779_2|636692|organism=Nannochloropsis oceanica|type=polypeptide|length=106bp
MAYVRSDGTVLAKKSFVQSITDAFWGFCNAIGLFFSTFSPSTREERRAQA
LERRGARRGASSSSVGTGGGGGSNTLRHRGANIHGLRQSSQATVPGGGCS
GGGCG*
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mRNA from alignment at scaffold_3:815423..815852+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_329 ID=mRNA_329|Name=jgi.p|Nanoce1779_2|636692|organism=Nannochloropsis oceanica|type=mRNA|length=430bp|location=Sequence derived from alignment at scaffold_3:815423..815852+ (Nannochloropsis oceanica)
ATGGCGTACGTAAGGAGCGACGGTACGTCTTGCATGTCTCGCGGTCCTTT
TGTCGGTGAAGGCTGTCTTTTGATGGTGCTAAGCTACTGCCTCCTTGTCG
TCATTCCCTCTCGTTTCTCGCCCCCCACCCACAGGCACTGTGCTGGCCAA
AAAGAGCTTTGTGCAATCCATCACGGACGCGTTCTGGGGTTTTTGCAATG
CTATTGGCTTATTCTTTTCCACATTCTCGCCATCCACGCGGGAGGAGCGA
CGTGCCCAGGCGCTAGAACGCCGGGGTGCACGCAGAGGGGCGAGCAGCAG
CAGCGTTGGGACCGGGGGCGGCGGAGGCAGCAACACGTTGCGACACCGGG
GCGCCAACATTCACGGTCTACGTCAATCCTCTCAAGCCACGGTGCCGGGT
GGAGGGTGCTCTGGCGGGGGCTGTGGCTAA
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Coding sequence (CDS) from alignment at scaffold_3:815423..815852+

>mRNA_329 ID=mRNA_329|Name=jgi.p|Nanoce1779_2|636692|organism=Nannochloropsis oceanica|type=CDS|length=636bp|location=Sequence derived from alignment at scaffold_3:815423..815852+ (Nannochloropsis oceanica)
ATGGCGTACGTAAGGAGCGACGGCACTGTGCTGGCCAAAAAGAGCTTTGT
GCAATCCATCACGGACGCGTTCTGGGGTTTTTGCAATGCTATTGGCTTAT
TCTTTTCCACATTCTCGCCATCCACGCGGGAGGAGCGACGTGCCCAGGCG
CTAGAACGCCGGGGTGCACGCAGAGGGGCGAGCAGCAGCAGCGTTGGGAC
CGGGGGCGGCGGAGGCAGCAACACGTTGCGACACCGGGGCGCCAACATTC
ACGGTCTACGTCAATCCTCTCAAGCCACGGTGCCGGGTGGAGGGTGCTCT
GGCGGGGGCTGTGGCTAAATGGCGTACGTAAGGAGCGACGGCACTGTGCT
GGCCAAAAAGAGCTTTGTGCAATCCATCACGGACGCGTTCTGGGGTTTTT
GCAATGCTATTGGCTTATTCTTTTCCACATTCTCGCCATCCACGCGGGAG
GAGCGACGTGCCCAGGCGCTAGAACGCCGGGGTGCACGCAGAGGGGCGAG
CAGCAGCAGCGTTGGGACCGGGGGCGGCGGAGGCAGCAACACGTTGCGAC
ACCGGGGCGCCAACATTCACGGTCTACGTCAATCCTCTCAAGCCACGGTG
CCGGGTGGAGGGTGCTCTGGCGGGGGCTGTGGCTAA
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Synonyms
Publications