jgi.p|Nanoce1779_2|585204, mRNA_3287 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|585204
Unique Name	mRNA_3287
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1711
Alignment location	scaffold_7:1112008..1113718 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	585290
Track	FilteredModels2
ProteinId	585204

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:1112008..1113718 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585204	gene_3287	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585204	mRNA_3287-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3287	CDS_3287	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:1112008..1113718+
coding sequence from alignment at scaffold_7:1112008..1113718+

mRNA sequence

>mRNA_3287 ID=mRNA_3287|Name=jgi.p|Nanoce1779_2|585204|organism=Nannochloropsis oceanica|type=mRNA|length=1711bp
ACAGTCATGAAGCTGTTGCTGTCGCTCTTACTTCTAGGGGCCATCCCGGC
TCAGGGCTTCCTGCTGCCCACACCCCTGCACTCCACACCAGCACATGCAC
AAAGCAGCCACCGACGACAAAAGGCAGGTGCTTTGAAAGCTGTAGTGGAC
CCGAACGAAGTTGCAGGCTTCGTCCAAACCCACTTGCCGTCCTCCTCCCA
GTGGCTCCTGCAAACGCTGCAGGGTGTGGCAGACGCCGCCGTTGCCACTG
CCCCGGACGCAGCCGCTGCTGTCGAAAATGGGAAGGAATTGACCGGAGCC
GCAGCTGCAGCAGCGGCGAACAATGGAGGATGGCTGGCGGCGCCCATTGG
AGCAATTGAGAAGGCGATCACATTCATGCACGAGGGGTTGCAAGGCGCGG
GCCTAACCAACACCTACGGCTTATCCATCATCGCATTCACTGTCCTGGTC
AAGCTCGTGACCTTACCGTTGAACTACAAGCAAATTGAGAGTACCACCAA
AATGCAAGCCATCCAACCAAAGATGAAAGAGATCCAGGCCAAGTACAAAT
CGGACCCGACGGTCCAACAGCAGAAAATGGCGCAGCTTTACTCGGATAAC
AACGTGAACCCCCTCGCTGGCTGCCTGCCAGCCCTCGTCCAAATCCCCAT
CTTCATCTCCCTCTACCGTGCCCTCACCAACCTTGCCGCGCAAAACGAGC
TCAACGAACCGTTTCTGTGGCTTCCTAACCTGGAGGGACCCACGTACGGT
GCCGGCCCTGCCGATGGAATGAACTGGCTGAAGCAGTGGGAGGGTTTTAC
TCCCTCCCTCGGCTGGCACGACACCATCGCCTTCCTGACCATTCCCCTCA
TCCTCATCGTGTCCCAAAGCATCTCGCAACAAATCCTGCAACCCACGCAA
AACAAGGATGATCCCTCGGCTGCTCAATCGCAAGCCATTTTGAAGTTCCT
CCCCTTCATGGTCGGTTATTTTTCCCTGAACGTTCCCTCAGGACTGGGTG
TGTACTGGATCGCCAACAATTTGATCACCACCTTGACAACTGTTGCTGTG
CGTGCCGTTATTCAAGGGAAGGAGGACGCCGCTGCTTCTCTTGTCAGGGG
GGGGGAGTCGGCGCCTGCCGAGCCTGCCCAAGAGCAGAGCGGAGGGCGCG
TGAAGAAGACAGGATTTGGGAAAGCCCCTCCTCCTCCTCCGGCGGCAAAG
AAGGGAGAGGTGGAGGACGTGGACGATGAATTGTCATCAGCGGCTGGAGG
GAAGGAGAGGAAGTTTGGGGGGTTGCCGGCCGTTGGGATCAGTAACGACG
AGCGGATGGGGAGGACAGAGAAGGGTTCGACCGTTGAGGTCTTGAAGCAG
GAGGGGGGGCTGACGGTATTGAGGGAAGTGAAGGATGGATCTGTGGTGTC
CACGACGGTACGATTGACGCCGGAGGAGATGAAGAGGAGGAGGGAGGCGT
TGGAGAGGGGGGAGGATCCGGCAGCCGTTGGGCCTCCTTCGCCGACGTTA
CCTGAACCGTCCAATGACCCGAGGCAGAATAAACGGTCCAAGCGACAAAA
GAAAAAGTAGAGAAAGGAAACAAGTGGAGTACGTAGTGGGAAGAAAAGAA
AGAGAAAGGGGGGACGGGAGGAGGGCAGGGAGCGAGGGTTTAGATGTTTA
TTTGAGTTGTGTGAATTTTGTTTTGATTCGCTGACATGGTTTGTTGGGTG
GGTGAGAGGGG

protein sequence of jgi.p|Nanoce1779_2|585204

>mRNA_3287-protein ID=mRNA_3287-protein|Name=jgi.p|Nanoce1779_2|585204|organism=Nannochloropsis oceanica|type=polypeptide|length=518bp
MKLLLSLLLLGAIPAQGFLLPTPLHSTPAHAQSSHRRQKAGALKAVVDPN
EVAGFVQTHLPSSSQWLLQTLQGVADAAVATAPDAAAAVENGKELTGAAA
AAAANNGGWLAAPIGAIEKAITFMHEGLQGAGLTNTYGLSIIAFTVLVKL
VTLPLNYKQIESTTKMQAIQPKMKEIQAKYKSDPTVQQQKMAQLYSDNNV
NPLAGCLPALVQIPIFISLYRALTNLAAQNELNEPFLWLPNLEGPTYGAG
PADGMNWLKQWEGFTPSLGWHDTIAFLTIPLILIVSQSISQQILQPTQNK
DDPSAAQSQAILKFLPFMVGYFSLNVPSGLGVYWIANNLITTLTTVAVRA
VIQGKEDAAASLVRGGESAPAEPAQEQSGGRVKKTGFGKAPPPPPAAKKG
EVEDVDDELSSAAGGKERKFGGLPAVGISNDERMGRTEKGSTVEVLKQEG
GLTVLREVKDGSVVSTTVRLTPEEMKRRREALERGEDPAAVGPPSPTLPE
PSNDPRQNKRSKRQKKK*

mRNA from alignment at scaffold_7:1112008..1113718+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3287 ID=mRNA_3287|Name=jgi.p|Nanoce1779_2|585204|organism=Nannochloropsis oceanica|type=mRNA|length=1711bp|location=Sequence derived from alignment at scaffold_7:1112008..1113718+ (Nannochloropsis oceanica)
ACAGTCATGAAGCTGTTGCTGTCGCTCTTACTTCTAGGGGCCATCCCGGC
TCAGGGCTTCCTGCTGCCCACACCCCTGCACTCCACACCAGCACATGCAC
AAAGCAGCCACCGACGACAAAAGGCAGGTGCTTTGAAAGCTGTAGTGGAC
CCGAACGAAGTTGCAGGCTTCGTCCAAACCCACTTGCCGTCCTCCTCCCA
GTGGCTCCTGCAAACGCTGCAGGGTGTGGCAGACGCCGCCGTTGCCACTG
CCCCGGACGCAGCCGCTGCTGTCGAAAATGGGAAGGAATTGACCGGAGCC
GCAGCTGCAGCAGCGGCGAACAATGGAGGATGGCTGGCGGCGCCCATTGG
AGCAATTGAGAAGGCGATCACATTCATGCACGAGGGGTTGCAAGGCGCGG
GCCTAACCAACACCTACGGCTTATCCATCATCGCATTCACTGTCCTGGTC
AAGCTCGTGACCTTACCGTTGAACTACAAGCAAATTGAGAGTACCACCAA
AATGCAAGCCATCCAACCAAAGATGAAAGAGATCCAGGCCAAGTACAAAT
CGGACCCGACGGTCCAACAGCAGAAAATGGCGCAGCTTTACTCGGATAAC
AACGTGAACCCCCTCGCTGGCTGCCTGCCAGCCCTCGTCCAAATCCCCAT
CTTCATCTCCCTCTACCGTGCCCTCACCAACCTTGCCGCGCAAAACGAGC
TCAACGAACCGTTTCTGTGGCTTCCTAACCTGGAGGGACCCACGTACGGT
GCCGGCCCTGCCGATGGAATGAACTGGCTGAAGCAGTGGGAGGGTTTTAC
TCCCTCCCTCGGCTGGCACGACACCATCGCCTTCCTGACCATTCCCCTCA
TCCTCATCGTGTCCCAAAGCATCTCGCAACAAATCCTGCAACCCACGCAA
AACAAGGATGATCCCTCGGCTGCTCAATCGCAAGCCATTTTGAAGTTCCT
CCCCTTCATGGTCGGTTATTTTTCCCTGAACGTTCCCTCAGGACTGGGTG
TGTACTGGATCGCCAACAATTTGATCACCACCTTGACAACTGTTGCTGTG
CGTGCCGTTATTCAAGGGAAGGAGGACGCCGCTGCTTCTCTTGTCAGGGG
GGGGGAGTCGGCGCCTGCCGAGCCTGCCCAAGAGCAGAGCGGAGGGCGCG
TGAAGAAGACAGGATTTGGGAAAGCCCCTCCTCCTCCTCCGGCGGCAAAG
AAGGGAGAGGTGGAGGACGTGGACGATGAATTGTCATCAGCGGCTGGAGG
GAAGGAGAGGAAGTTTGGGGGGTTGCCGGCCGTTGGGATCAGTAACGACG
AGCGGATGGGGAGGACAGAGAAGGGTTCGACCGTTGAGGTCTTGAAGCAG
GAGGGGGGGCTGACGGTATTGAGGGAAGTGAAGGATGGATCTGTGGTGTC
CACGACGGTACGATTGACGCCGGAGGAGATGAAGAGGAGGAGGGAGGCGT
TGGAGAGGGGGGAGGATCCGGCAGCCGTTGGGCCTCCTTCGCCGACGTTA
CCTGAACCGTCCAATGACCCGAGGCAGAATAAACGGTCCAAGCGACAAAA
GAAAAAGTAGAGAAAGGAAACAAGTGGAGTACGTAGTGGGAAGAAAAGAA
AGAGAAAGGGGGGACGGGAGGAGGGCAGGGAGCGAGGGTTTAGATGTTTA
TTTGAGTTGTGTGAATTTTGTTTTGATTCGCTGACATGGTTTGTTGGGTG
GGTGAGAGGGG

Coding sequence (CDS) from alignment at scaffold_7:1112008..1113718+

>mRNA_3287 ID=mRNA_3287|Name=jgi.p|Nanoce1779_2|585204|organism=Nannochloropsis oceanica|type=CDS|length=1554bp|location=Sequence derived from alignment at scaffold_7:1112008..1113718+ (Nannochloropsis oceanica)
ATGAAGCTGTTGCTGTCGCTCTTACTTCTAGGGGCCATCCCGGCTCAGGG
CTTCCTGCTGCCCACACCCCTGCACTCCACACCAGCACATGCACAAAGCA
GCCACCGACGACAAAAGGCAGGTGCTTTGAAAGCTGTAGTGGACCCGAAC
GAAGTTGCAGGCTTCGTCCAAACCCACTTGCCGTCCTCCTCCCAGTGGCT
CCTGCAAACGCTGCAGGGTGTGGCAGACGCCGCCGTTGCCACTGCCCCGG
ACGCAGCCGCTGCTGTCGAAAATGGGAAGGAATTGACCGGAGCCGCAGCT
GCAGCAGCGGCGAACAATGGAGGATGGCTGGCGGCGCCCATTGGAGCAAT
TGAGAAGGCGATCACATTCATGCACGAGGGGTTGCAAGGCGCGGGCCTAA
CCAACACCTACGGCTTATCCATCATCGCATTCACTGTCCTGGTCAAGCTC
GTGACCTTACCGTTGAACTACAAGCAAATTGAGAGTACCACCAAAATGCA
AGCCATCCAACCAAAGATGAAAGAGATCCAGGCCAAGTACAAATCGGACC
CGACGGTCCAACAGCAGAAAATGGCGCAGCTTTACTCGGATAACAACGTG
AACCCCCTCGCTGGCTGCCTGCCAGCCCTCGTCCAAATCCCCATCTTCAT
CTCCCTCTACCGTGCCCTCACCAACCTTGCCGCGCAAAACGAGCTCAACG
AACCGTTTCTGTGGCTTCCTAACCTGGAGGGACCCACGTACGGTGCCGGC
CCTGCCGATGGAATGAACTGGCTGAAGCAGTGGGAGGGTTTTACTCCCTC
CCTCGGCTGGCACGACACCATCGCCTTCCTGACCATTCCCCTCATCCTCA
TCGTGTCCCAAAGCATCTCGCAACAAATCCTGCAACCCACGCAAAACAAG
GATGATCCCTCGGCTGCTCAATCGCAAGCCATTTTGAAGTTCCTCCCCTT
CATGGTCGGTTATTTTTCCCTGAACGTTCCCTCAGGACTGGGTGTGTACT
GGATCGCCAACAATTTGATCACCACCTTGACAACTGTTGCTGTGCGTGCC
GTTATTCAAGGGAAGGAGGACGCCGCTGCTTCTCTTGTCAGGGGGGGGGA
GTCGGCGCCTGCCGAGCCTGCCCAAGAGCAGAGCGGAGGGCGCGTGAAGA
AGACAGGATTTGGGAAAGCCCCTCCTCCTCCTCCGGCGGCAAAGAAGGGA
GAGGTGGAGGACGTGGACGATGAATTGTCATCAGCGGCTGGAGGGAAGGA
GAGGAAGTTTGGGGGGTTGCCGGCCGTTGGGATCAGTAACGACGAGCGGA
TGGGGAGGACAGAGAAGGGTTCGACCGTTGAGGTCTTGAAGCAGGAGGGG
GGGCTGACGGTATTGAGGGAAGTGAAGGATGGATCTGTGGTGTCCACGAC
GGTACGATTGACGCCGGAGGAGATGAAGAGGAGGAGGGAGGCGTTGGAGA
GGGGGGAGGATCCGGCAGCCGTTGGGCCTCCTTCGCCGACGTTACCTGAA
CCGTCCAATGACCCGAGGCAGAATAAACGGTCCAAGCGACAAAAGAAAAA
GTAG

Synonyms

Publications