jgi.p|Nanoce1779_2|585201, mRNA_3286 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585201
Unique NamemRNA_3286
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1845
Alignment locationscaffold_7:1109099..1111114 +

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Properties
Property NameValue
TranscriptId585287
TrackFilteredModels2
ProteinId585201
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:1109099..1111114 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585201gene_3286Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585201mRNA_3286-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3286CDS_3286Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3286 ID=mRNA_3286|Name=jgi.p|Nanoce1779_2|585201|organism=Nannochloropsis oceanica|type=mRNA|length=1845bp
CGCCCCTCTCTGGTCGATGTCGGTGAGAACTAAGTAACTGCATCTGCTGC
TGCTGCTGCTGTTCTTGCTCCTGGTCATCCTCATAGTAAGGGAAAAAATG
CTCGTGGTAATGCGGCGAGGAGGAGGAGAGTGGAGACATGGGCGAAGGGA
GGGGGCCAATAAGCACGACAGAAGCTGCAGCAGGAGAAGGGTACAAAGAC
ATAGGGAGGCTCAGGGGTGGCGGGTCATCTTCTTCCTCGTGGGAGGTGTT
TTCGTCATCGTCCTCCATGTTGTTCTCGGTATGGTGAGGATGTTGGAGAT
GGGCGTGAAGCGTGCTCATATCCTCCTCCCCCTCCTCCGGCTCCTCCTCC
TCCTCCTCGCCTATCATCTGCCCCTCCCCTTCCTCAAGCCAATCGTGGAA
GCCGTCCTCGTCGGGCCAGACAATATGCAGATCAACGGTCCCACCACCAG
GAATGGGTAGCACGGCACCGGCAGCACCACCAGCTGGAGCACCCGCGGCA
GCACCCACCGCGGCAGCTGCAGAGGGAGGCGCGCCGGCAGAGGCATGAAC
CCAATTGTCACTGCCCACGCCAATGAGAACCATGTTCTCGTTTGGATTAA
GAAAGTTCGTGGGTGTAGATGCAGAGGACGCTATTGCGGTTAGTGCTGGC
TGGGAGTACTCATATATCGGACTAACAAACCCAAGAGCATATGAGTCAGG
AGGTCAAGATGATGAAAATGACTGATGGGCGATGAAGCACCGGGGTATGC
CTATGCATGTGTTATTGAAACAGGGTCATGAGAGATTCATGTCTAGCCAC
GTGCAAGCGGAAGAACGGTCCCTTCGACGGCGAGCCTCGCCGTCACGAGA
CGCCCAAGTTTTGGAGAAGTTGCTTGGAGTTCTTCCGGAACCCACGAAGC
GAGGTCTCAAAATGAAAAAAACTTTGCACAATTCGAATTGTCCGAACATG
ATGCACAATTCTCTCTCTGATGATAAGGGTTGGTAACAAAGGTGTCCCAT
GCCTTGTCTTGTTTTTTTAAGTGTAGGCTTTTTATGGCGCAAGCCGGACC
AGGCCGACCGTGAAGAGCATTACCCCCCCCCCGGGCAGAATGCTTAGACC
ATATGAAATGAGCATTCTCAATGCTCTTTAAGTTCTGAAATATGTACACC
TATCCTCGAATTGTGTTGTGACCCATCAGGACAGAAAAGTGACGGACAAG
TTATCAGATCGACCCAGGATGGCAAAAGCGAGAGTAGAAGAAAGATCGGG
GACATAGGGGTTGAGTGGCGGGTTGAAACCCGCCACTCTTAGGAATGCAA
TTTGAAGAATTTGTTACATGGGGGCTCGGAATATGTAAAGACACAAGAAA
AAAAAGGAGAAAGGAGAAGTGAAAGAGTAGAAAAGATTTTTGGACTTAGG
GCGCGCGAAATGCCGAACGAGCACCATCGAGAGTCATCTTGGCGTCCTTT
CTCTTTACCAAAGTTTAAGCCAGCGCAACATTATTTACGTATATCATACC
TCAACTATCTAAGACTAGAACCGTAGAAGCCATGCTTTTTTCAAAGTGGT
GAGATAGACGAGAGAAAGGATTGAAAAAGTCAAACTATGCAGCCTCCTAC
CTTTACCCAAGCAAGCGCGACTAGGGAACCATTGGAGCATAAATACGAAT
CGACACGATGAGAGTCACTATAGCATCAGCACTATCCATTTTGCTTTGTT
GAGGGGTACTGTGCTGCGCATGCAGTGCAAGGAGGGGAGGGAGGAAAAAA
AGAAGGAGAACGAGAACGAGAAGGAAAAGGAGAAGAGAAGGAGACGGGTT
CCCGCAACATGCACCAAAAGGAAGCCGCCCCTTGACAAGCAGCGC
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protein sequence of jgi.p|Nanoce1779_2|585201

>mRNA_3286-protein ID=mRNA_3286-protein|Name=jgi.p|Nanoce1779_2|585201|organism=Nannochloropsis oceanica|type=polypeptide|length=121bp
MLVVMRRGGGEWRHGRREGANKHDRSCSRRRVQRHREAQGWRVIFFLVGG
VFVIVLHVVLGMVRMLEMGVKRAHILLPLLRLLLLLLAYHLPLPFLKPIV
EAVLVGPDNMQINGPTTRNG*
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mRNA from alignment at scaffold_7:1109099..1111114+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3286 ID=mRNA_3286|Name=jgi.p|Nanoce1779_2|585201|organism=Nannochloropsis oceanica|type=mRNA|length=2016bp|location=Sequence derived from alignment at scaffold_7:1109099..1111114+ (Nannochloropsis oceanica)
CGCCCCTCTCTGGTCGATGTCGGTGAGAACTAAGTAACTGCATCTGCTGC
TGCTGCTGCTGTTCTTGCTCCTGGTCATCCTCATAGTAAGGGAAAAAATG
CTCGTGGTAATGCGGCGAGGAGGAGGAGAGTGGAGACATGGGCGAAGGGA
GGGGGCCAATAAGCACGACAGAAGCTGCAGCAGGAGAAGGGTACAAAGAC
ATAGGGAGGCTCAGGGGTGGCGGGTCATCTTCTTCCTCGTGGGAGGTGTT
TTCGTCATCGTCCTCCATGTTGTTCTCGGTATGGTGAGGATGTTGGAGAT
GGGCGTGAAGCGTGCTGATGTGCGATGGAAGAGGCGGAATAAGAGGAGAG
GAAGGGTGTTAGGAACGGTGGTACTGCGCAAGATGACAAGCTGATAGATA
GCAGATTTGGAATTTCCGAAGTAAGTGAAACATTAATTCTGTCATTCCAT
TTGCTGATGCAAAATGCATGACTTGTCACACGTACCTCATATCCTCCTCC
CCCTCCTCCGGCTCCTCCTCCTCCTCCTCGCCTATCATCTGCCCCTCCCC
TTCCTCAAGCCAATCGTGGAAGCCGTCCTCGTCGGGCCAGACAATATGCA
GATCAACGGTCCCACCACCAGGAATGGGTAGCACGGCACCGGCAGCACCA
CCAGCTGGAGCACCCGCGGCAGCACCCACCGCGGCAGCTGCAGAGGGAGG
CGCGCCGGCAGAGGCATGAACCCAATTGTCACTGCCCACGCCAATGAGAA
CCATGTTCTCGTTTGGATTAAGAAAGTTCGTGGGTGTAGATGCAGAGGAC
GCTATTGCGGTTAGTGCTGGCTGGGAGTACTCATATATCGGACTAACAAA
CCCAAGAGCATATGAGTCAGGAGGTCAAGATGATGAAAATGACTGATGGG
CGATGAAGCACCGGGGTATGCCTATGCATGTGTTATTGAAACAGGGTCAT
GAGAGATTCATGTCTAGCCACGTGCAAGCGGAAGAACGGTCCCTTCGACG
GCGAGCCTCGCCGTCACGAGACGCCCAAGTTTTGGAGAAGTTGCTTGGAG
TTCTTCCGGAACCCACGAAGCGAGGTCTCAAAATGAAAAAAACTTTGCAC
AATTCGAATTGTCCGAACATGATGCACAATTCTCTCTCTGATGATAAGGG
TTGGTAACAAAGGTGTCCCATGCCTTGTCTTGTTTTTTTAAGTGTAGGCT
TTTTATGGCGCAAGCCGGACCAGGCCGACCGTGAAGAGCATTACCCCCCC
CCCGGGCAGAATGCTTAGACCATATGAAATGAGCATTCTCAATGCTCTTT
AAGTTCTGAAATATGTACACCTATCCTCGAATTGTGTTGTGACCCATCAG
GACAGAAAAGTGACGGACAAGTTATCAGATCGACCCAGGATGGCAAAAGC
GAGAGTAGAAGAAAGATCGGGGACATAGGGGTTGAGTGGCGGGTTGAAAC
CCGCCACTCTTAGGAATGCAATTTGAAGAATTTGTTACATGGGGGCTCGG
AATATGTAAAGACACAAGAAAAAAAAGGAGAAAGGAGAAGTGAAAGAGTA
GAAAAGATTTTTGGACTTAGGGCGCGCGAAATGCCGAACGAGCACCATCG
AGAGTCATCTTGGCGTCCTTTCTCTTTACCAAAGTTTAAGCCAGCGCAAC
ATTATTTACGTATATCATACCTCAACTATCTAAGACTAGAACCGTAGAAG
CCATGCTTTTTTCAAAGTGGTGAGATAGACGAGAGAAAGGATTGAAAAAG
TCAAACTATGCAGCCTCCTACCTTTACCCAAGCAAGCGCGACTAGGGAAC
CATTGGAGCATAAATACGAATCGACACGATGAGAGTCACTATAGCATCAG
CACTATCCATTTTGCTTTGTTGAGGGGTACTGTGCTGCGCATGCAGTGCA
AGGAGGGGAGGGAGGAAAAAAAGAAGGAGAACGAGAACGAGAAGGAAAAG
GAGAAGAGAAGGAGACGGGTTCCCGCAACATGCACCAAAAGGAAGCCGCC
CCTTGACAAGCAGCGC
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Coding sequence (CDS) from alignment at scaffold_7:1109099..1111114+

>mRNA_3286 ID=mRNA_3286|Name=jgi.p|Nanoce1779_2|585201|organism=Nannochloropsis oceanica|type=CDS|length=726bp|location=Sequence derived from alignment at scaffold_7:1109099..1111114+ (Nannochloropsis oceanica)
ATGCTCGTGGTAATGCGGCGAGGAGGAGGAGAGTGGAGACATGGGCGAAG
GGAGGGGGCCAATAAGCACGACAGAAGCTGCAGCAGGAGAAGGGTACAAA
GACATAGGGAGGCTCAGGGGTGGCGGGTCATCTTCTTCCTCGTGGGAGGT
GTTTTCGTCATCGTCCTCCATGTTGTTCTCGGTATGGTGAGGATGTTGGA
GATGGGCGTGAAGCGTGCTCATATCCTCCTCCCCCTCCTCCGGCTCCTCC
TCCTCCTCCTCGCCTATCATCTGCCCCTCCCCTTCCTCAAGCCAATCGTG
GAAGCCGTCCTCGTCGGGCCAGACAATATGCAGATCAACGGTCCCACCAC
CAGGAATGGGTAGATGCTCGTGGTAATGCGGCGAGGAGGAGGAGAGTGGA
GACATGGGCGAAGGGAGGGGGCCAATAAGCACGACAGAAGCTGCAGCAGG
AGAAGGGTACAAAGACATAGGGAGGCTCAGGGGTGGCGGGTCATCTTCTT
CCTCGTGGGAGGTGTTTTCGTCATCGTCCTCCATGTTGTTCTCGGTATGG
TGAGGATGTTGGAGATGGGCGTGAAGCGTGCTCATATCCTCCTCCCCCTC
CTCCGGCTCCTCCTCCTCCTCCTCGCCTATCATCTGCCCCTCCCCTTCCT
CAAGCCAATCGTGGAAGCCGTCCTCGTCGGGCCAGACAATATGCAGATCA
ACGGTCCCACCACCAGGAATGGGTAG
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Synonyms
Publications