jgi.p|Nanoce1779_2|553913, mRNA_3285 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|553913
Unique NamemRNA_3285
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1324
Alignment locationscaffold_7:1106534..1107857 +

Link to JBrowse

Properties
Property NameValue
TranscriptId553999
TrackFilteredModels2
ProteinId553913
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:1106534..1107857 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|553913gene_3285Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|553913mRNA_3285-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3285CDS_3285Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3285 ID=mRNA_3285|Name=jgi.p|Nanoce1779_2|553913|organism=Nannochloropsis oceanica|type=mRNA|length=1324bp
ATGCCGCCTGATGACCCGCCTCCGCCCATCGTGGTCATTTGCCATGGTGT
CTTCCAAACAGCGGCAGATTTGTATGAATTTTGCACGTTTCTGACAGAGA
CGTGCGGATACATAGCATGTGTCTTCAACCGGAGGGGAAACGACATGCCC
TTGTCGAGAGCGCGGTTCAATACGGTCGGGGACCAGTGCGATTTTCGATT
TATTTTGTCTCGGATGAGGGACTTTTTCCCGAATAATTGTTTTTACGGCG
TGGGGATTAGCGCGGGCTCGAGTTTGTTGGCCAGGTATTTGGGGGATGCA
GGGGAAGAGAGTGAGTTGGTGGGCGGGGTTCTGATCTCAGGGGGATATGA
TATGGAGCTGTCCTTGCAGCACATGACGCCATTGGCGGATTTAGTGGTGA
CCACCCATGCCAAGAGCTTCTTCCTGGAGCGGAACGAGGAGACCTTGAAG
AAAGAGGATGGGCCAGGCTTGCAGCGGTTGAAGAGGAGCAGGTCCATGCA
GGAGTTCCATGAGCACTTGCATATCTTTGACGGGAAGGCCTCTAGAGAAG
AGTATTTTCAAACCCATAACCCGGCGCTGGTCCTCGGCAAGATTGCCCGA
CCCGTGGTGTACATTAATGCCTACGACGATATGTGCTTCCCGGGTCATTT
TACCTTCCAATTCAAGAAGCTGGTGGAGGAATGTCAGCTGGCCACGGTAC
TGCATGTGGAGAAGGGGGGGCATGGGACGTTTTATGAGAATTGGGATGCC
GGTTCCTCTCGGGCTTTTCAGTGCGTGAGGGAGTTCGTGGATTGTCTGCA
GAAGGGGTAAGGGGGGGGGGGAGGTGGGAGCATATGTACTATATTTGTGT
TGGTAGATGAAGGAAGGGAGGGAGTGTCGATCAGAGATACACTCAGGAGA
GGGAGGGAGAGGAGGAGGAGGGGCCTCGTACAGTACACATCGCTTTGATC
TTCACCACCCAAAGGATGTGAGAAGAGGGAGAGAAAGCGGAGACAAACTC
CAGATGAGCACTCTATGTCAGCCGATACACAAAGCGAAAAGAGGAGATAG
CGAGGGAGATAAGAAAGAAGAGTAAATGCAACAACATGAGACACCAGAGT
CTGAAAAAGAGGGTGGGAAACCAAGATGATTTTTTCGTATATGCAGAGTG
AAAAATGTAATAGGGCGATTGGGCTATAGAGTAGGGAAGCAAGTATGGAA
GAGCGAGACCAGCAGAATAGCGTTTTTTTGTAACATAAGAGCAACGGTAA
CGACAACAACGATACAGAGGACACAAAAGAGAAGGGAAGCAAAAATAAGA
GAGGAAGAATCAACAATTCGTTCT
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protein sequence of jgi.p|Nanoce1779_2|553913

>mRNA_3285-protein ID=mRNA_3285-protein|Name=jgi.p|Nanoce1779_2|553913|organism=Nannochloropsis oceanica|type=polypeptide|length=270bp
MPPDDPPPPIVVICHGVFQTAADLYEFCTFLTETCGYIACVFNRRGNDMP
LSRARFNTVGDQCDFRFILSRMRDFFPNNCFYGVGISAGSSLLARYLGDA
GEESELVGGVLISGGYDMELSLQHMTPLADLVVTTHAKSFFLERNEETLK
KEDGPGLQRLKRSRSMQEFHEHLHIFDGKASREEYFQTHNPALVLGKIAR
PVVYINAYDDMCFPGHFTFQFKKLVEECQLATVLHVEKGGHGTFYENWDA
GSSRAFQCVREFVDCLQKG*
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mRNA from alignment at scaffold_7:1106534..1107857+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3285 ID=mRNA_3285|Name=jgi.p|Nanoce1779_2|553913|organism=Nannochloropsis oceanica|type=mRNA|length=1324bp|location=Sequence derived from alignment at scaffold_7:1106534..1107857+ (Nannochloropsis oceanica)
ATGCCGCCTGATGACCCGCCTCCGCCCATCGTGGTCATTTGCCATGGTGT
CTTCCAAACAGCGGCAGATTTGTATGAATTTTGCACGTTTCTGACAGAGA
CGTGCGGATACATAGCATGTGTCTTCAACCGGAGGGGAAACGACATGCCC
TTGTCGAGAGCGCGGTTCAATACGGTCGGGGACCAGTGCGATTTTCGATT
TATTTTGTCTCGGATGAGGGACTTTTTCCCGAATAATTGTTTTTACGGCG
TGGGGATTAGCGCGGGCTCGAGTTTGTTGGCCAGGTATTTGGGGGATGCA
GGGGAAGAGAGTGAGTTGGTGGGCGGGGTTCTGATCTCAGGGGGATATGA
TATGGAGCTGTCCTTGCAGCACATGACGCCATTGGCGGATTTAGTGGTGA
CCACCCATGCCAAGAGCTTCTTCCTGGAGCGGAACGAGGAGACCTTGAAG
AAAGAGGATGGGCCAGGCTTGCAGCGGTTGAAGAGGAGCAGGTCCATGCA
GGAGTTCCATGAGCACTTGCATATCTTTGACGGGAAGGCCTCTAGAGAAG
AGTATTTTCAAACCCATAACCCGGCGCTGGTCCTCGGCAAGATTGCCCGA
CCCGTGGTGTACATTAATGCCTACGACGATATGTGCTTCCCGGGTCATTT
TACCTTCCAATTCAAGAAGCTGGTGGAGGAATGTCAGCTGGCCACGGTAC
TGCATGTGGAGAAGGGGGGGCATGGGACGTTTTATGAGAATTGGGATGCC
GGTTCCTCTCGGGCTTTTCAGTGCGTGAGGGAGTTCGTGGATTGTCTGCA
GAAGGGGTAAGGGGGGGGGGGAGGTGGGAGCATATGTACTATATTTGTGT
TGGTAGATGAAGGAAGGGAGGGAGTGTCGATCAGAGATACACTCAGGAGA
GGGAGGGAGAGGAGGAGGAGGGGCCTCGTACAGTACACATCGCTTTGATC
TTCACCACCCAAAGGATGTGAGAAGAGGGAGAGAAAGCGGAGACAAACTC
CAGATGAGCACTCTATGTCAGCCGATACACAAAGCGAAAAGAGGAGATAG
CGAGGGAGATAAGAAAGAAGAGTAAATGCAACAACATGAGACACCAGAGT
CTGAAAAAGAGGGTGGGAAACCAAGATGATTTTTTCGTATATGCAGAGTG
AAAAATGTAATAGGGCGATTGGGCTATAGAGTAGGGAAGCAAGTATGGAA
GAGCGAGACCAGCAGAATAGCGTTTTTTTGTAACATAAGAGCAACGGTAA
CGACAACAACGATACAGAGGACACAAAAGAGAAGGGAAGCAAAAATAAGA
GAGGAAGAATCAACAATTCGTTCT
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Coding sequence (CDS) from alignment at scaffold_7:1106534..1107857+

>mRNA_3285 ID=mRNA_3285|Name=jgi.p|Nanoce1779_2|553913|organism=Nannochloropsis oceanica|type=CDS|length=810bp|location=Sequence derived from alignment at scaffold_7:1106534..1107857+ (Nannochloropsis oceanica)
ATGCCGCCTGATGACCCGCCTCCGCCCATCGTGGTCATTTGCCATGGTGT
CTTCCAAACAGCGGCAGATTTGTATGAATTTTGCACGTTTCTGACAGAGA
CGTGCGGATACATAGCATGTGTCTTCAACCGGAGGGGAAACGACATGCCC
TTGTCGAGAGCGCGGTTCAATACGGTCGGGGACCAGTGCGATTTTCGATT
TATTTTGTCTCGGATGAGGGACTTTTTCCCGAATAATTGTTTTTACGGCG
TGGGGATTAGCGCGGGCTCGAGTTTGTTGGCCAGGTATTTGGGGGATGCA
GGGGAAGAGAGTGAGTTGGTGGGCGGGGTTCTGATCTCAGGGGGATATGA
TATGGAGCTGTCCTTGCAGCACATGACGCCATTGGCGGATTTAGTGGTGA
CCACCCATGCCAAGAGCTTCTTCCTGGAGCGGAACGAGGAGACCTTGAAG
AAAGAGGATGGGCCAGGCTTGCAGCGGTTGAAGAGGAGCAGGTCCATGCA
GGAGTTCCATGAGCACTTGCATATCTTTGACGGGAAGGCCTCTAGAGAAG
AGTATTTTCAAACCCATAACCCGGCGCTGGTCCTCGGCAAGATTGCCCGA
CCCGTGGTGTACATTAATGCCTACGACGATATGTGCTTCCCGGGTCATTT
TACCTTCCAATTCAAGAAGCTGGTGGAGGAATGTCAGCTGGCCACGGTAC
TGCATGTGGAGAAGGGGGGGCATGGGACGTTTTATGAGAATTGGGATGCC
GGTTCCTCTCGGGCTTTTCAGTGCGTGAGGGAGTTCGTGGATTGTCTGCA
GAAGGGGTAA
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Synonyms
Publications