jgi.p|Nanoce1779_2|402462, mRNA_3284 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|402462
Unique NamemRNA_3284
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length959
Alignment locationscaffold_7:1104956..1105914 -

Link to JBrowse

Properties
Property NameValue
TranscriptId402548
TrackFilteredModels2
ProteinId402462
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:1104956..1105914 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|402462gene_3284Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|402462mRNA_3284-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3284CDS_3284Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3284 ID=mRNA_3284|Name=jgi.p|Nanoce1779_2|402462|organism=Nannochloropsis oceanica|type=mRNA|length=959bp
TAAGACGAAACGCGAGACCAGCAAATTGGATAAATGAATGCGTCGAGATG
CAAGGCAGCAGGCCGTGAGGGGGCAGGGCACAGAAGGAGGCAGCCTGTGG
AAGTATGCTTGGGAAGGGTAAGAGGTGATTAAGAAACAGGATATAAATCA
CATCATGAAGGGATATCTCGCATGCGCACTTCTATACGCGTGCTCGACAG
CATGGCAGAGTGTTGTTAGATCTCGGAACAATGAGATGTGGTGGGAGAAG
CGAGCAAATCCGACTCGTGCTTGGAGCCTTTCGAAACCCGAGCAAAAACG
GCCACGTACCAACACAACAACACTACACCCACCCGTAGATCAGCATCACA
CGGAAAGCCGTCAAGAAGGCAAAGCCAGGCATGCACGCGCGTGCCCCATG
TCCAAGCTGAAGAGGAATCATCACCCACGTGGCTCACCAGCTGACGCAAA
TTCCAGACCTCCCCTCCCCTTGAATTCAAGCGCTCAAATCGTACCTGACA
AAGCAGGAAAGCAAGCTTCTGATTGTCGTTGGTTTCCTGCTGTTTCTCAT
GTTTTCTTTTTTCTTCCTTCGCGGTTGAAGTGCATGCCTGGGCAGCACGA
AAAAAACCGATATCAATTTAGGCAGCCTCACTCGCTTGCCCTCCCCCCCC
TCCTTCCTTCCTACCTTACTTCCCCATGCACTCAAAATAGCAAGACCCTA
GGCACACGAAGGCCACCAACTAAGAATGACACAAAAACCACCCGACAAAT
AGCACATAGAAACACATCCAGTTTTGAGCCTGCACCCGCCCACCAGATGG
ATGTCTGAAGAGGGTGCAACATGACGCAGACACTCCTCTCTTACATCCAT
ACACGCACGTTCACACGCGCTCTCTTTCCCACAGATTTTTTCCTTCCCAC
TTTATGACTAATCGTGGATCGCTATTTTATACTTCAGTGAGCGGGAAGAA
CATTAAACC
back to top

protein sequence of jgi.p|Nanoce1779_2|402462

>mRNA_3284-protein ID=mRNA_3284-protein|Name=jgi.p|Nanoce1779_2|402462|organism=Nannochloropsis oceanica|type=polypeptide|length=218bp
MKGYLACALLYACSTAWQSVVRSRNNEMWWEKRANPTRAWSLSKPEQKRP
RTNTTTLHPPVDQHHTESRQEGKARHARACPMSKLKRNHHPRGSPADANS
RPPLPLNSSAQIVPDKAGKQASDCRWFPAVSHVFFFLPSRLKCMPGQHEK
NRYQFRQPHSLALPPLLPSYLTSPCTQNSKTLGTRRPPTKNDTKTTRQIA
HRNTSSFEPAPAHQMDV*
back to top

mRNA from alignment at scaffold_7:1104956..1105914-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3284 ID=mRNA_3284|Name=jgi.p|Nanoce1779_2|402462|organism=Nannochloropsis oceanica|type=mRNA|length=959bp|location=Sequence derived from alignment at scaffold_7:1104956..1105914- (Nannochloropsis oceanica)
TAAGACGAAACGCGAGACCAGCAAATTGGATAAATGAATGCGTCGAGATG
CAAGGCAGCAGGCCGTGAGGGGGCAGGGCACAGAAGGAGGCAGCCTGTGG
AAGTATGCTTGGGAAGGGTAAGAGGTGATTAAGAAACAGGATATAAATCA
CATCATGAAGGGATATCTCGCATGCGCACTTCTATACGCGTGCTCGACAG
CATGGCAGAGTGTTGTTAGATCTCGGAACAATGAGATGTGGTGGGAGAAG
CGAGCAAATCCGACTCGTGCTTGGAGCCTTTCGAAACCCGAGCAAAAACG
GCCACGTACCAACACAACAACACTACACCCACCCGTAGATCAGCATCACA
CGGAAAGCCGTCAAGAAGGCAAAGCCAGGCATGCACGCGCGTGCCCCATG
TCCAAGCTGAAGAGGAATCATCACCCACGTGGCTCACCAGCTGACGCAAA
TTCCAGACCTCCCCTCCCCTTGAATTCAAGCGCTCAAATCGTACCTGACA
AAGCAGGAAAGCAAGCTTCTGATTGTCGTTGGTTTCCTGCTGTTTCTCAT
GTTTTCTTTTTTCTTCCTTCGCGGTTGAAGTGCATGCCTGGGCAGCACGA
AAAAAACCGATATCAATTTAGGCAGCCTCACTCGCTTGCCCTCCCCCCCC
TCCTTCCTTCCTACCTTACTTCCCCATGCACTCAAAATAGCAAGACCCTA
GGCACACGAAGGCCACCAACTAAGAATGACACAAAAACCACCCGACAAAT
AGCACATAGAAACACATCCAGTTTTGAGCCTGCACCCGCCCACCAGATGG
ATGTCTGAAGAGGGTGCAACATGACGCAGACACTCCTCTCTTACATCCAT
ACACGCACGTTCACACGCGCTCTCTTTCCCACAGATTTTTTCCTTCCCAC
TTTATGACTAATCGTGGATCGCTATTTTATACTTCAGTGAGCGGGAAGAA
CATTAAACC
back to top

Coding sequence (CDS) from alignment at scaffold_7:1104956..1105914-

>mRNA_3284 ID=mRNA_3284|Name=jgi.p|Nanoce1779_2|402462|organism=Nannochloropsis oceanica|type=CDS|length=654bp|location=Sequence derived from alignment at scaffold_7:1104956..1105914- (Nannochloropsis oceanica)
ATGAAGGGATATCTCGCATGCGCACTTCTATACGCGTGCTCGACAGCATG
GCAGAGTGTTGTTAGATCTCGGAACAATGAGATGTGGTGGGAGAAGCGAG
CAAATCCGACTCGTGCTTGGAGCCTTTCGAAACCCGAGCAAAAACGGCCA
CGTACCAACACAACAACACTACACCCACCCGTAGATCAGCATCACACGGA
AAGCCGTCAAGAAGGCAAAGCCAGGCATGCACGCGCGTGCCCCATGTCCA
AGCTGAAGAGGAATCATCACCCACGTGGCTCACCAGCTGACGCAAATTCC
AGACCTCCCCTCCCCTTGAATTCAAGCGCTCAAATCGTACCTGACAAAGC
AGGAAAGCAAGCTTCTGATTGTCGTTGGTTTCCTGCTGTTTCTCATGTTT
TCTTTTTTCTTCCTTCGCGGTTGAAGTGCATGCCTGGGCAGCACGAAAAA
AACCGATATCAATTTAGGCAGCCTCACTCGCTTGCCCTCCCCCCCCTCCT
TCCTTCCTACCTTACTTCCCCATGCACTCAAAATAGCAAGACCCTAGGCA
CACGAAGGCCACCAACTAAGAATGACACAAAAACCACCCGACAAATAGCA
CATAGAAACACATCCAGTTTTGAGCCTGCACCCGCCCACCAGATGGATGT
CTGA
back to top
Synonyms
Publications