jgi.p|Nanoce1779_2|585193, mRNA_3283 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585193
Unique NamemRNA_3283
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1050
Alignment locationscaffold_7:1103345..1104394 +

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Properties
Property NameValue
TranscriptId585279
TrackFilteredModels2
ProteinId585193
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:1103345..1104394 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585193gene_3283Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585193mRNA_3283-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3283CDS_3283Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3283 ID=mRNA_3283|Name=jgi.p|Nanoce1779_2|585193|organism=Nannochloropsis oceanica|type=mRNA|length=1050bp
AGATCACAGTCTCCTATCCCGTTTCCACCGTCACAATGAAGACCTTTGCT
GTGCTTACGCTGGGTTCTCTGGCCATGTCCCAGGCCTTTATGGCGCCCTC
CCCAGCCGCATTTGGCCCCATCAGCAGATCAGCGGTGCGATCTTCCGCTG
GTCGCAGCATGAGGATGGAGAACTTTAACCTGCCTGTGGGAGAGGACCAG
GCCGAAAACGTGCCTACCAGCATGCTGGGCGAGGCCAACTATCGCAAGTT
CGTGGCGTCCTACAAGCCTGATGGCATGATCGTCGGCGGCGCCCGCTACC
CCCTGTTCAGGCGCGTCTCGGAGCTCAAGCTTCTGTCCCTGACTGCCGAG
ACTGGCCTCTTGACTCGCCTGGAAGAGTTGGGCCTGAAGTTGAGTGACCT
GGAGAAGTTGCTTCCCTTGGCAGAGGAGCTCCAGTTGTTGCAACTGGCCG
AGAAAAACCAAGACCTGATTCTCCAGACCCTGGCCCCTATTGCTATCGAA
CAAGCCCCTGCCCTCCTCCCCATCCTCACCGCTGTGCTGCGCACGCCTCC
CACAACCTTTTACGCCGTCGCTGCAGCTGCTCTGGCCGCTGAGGCGGGCA
TTGTCCTCGTGAGCGGTAACCCTCTGATTGACGTCCTTGCTGGCATCCCC
CTTGTGGGCGTGGCCGCCGTCTCTGCTGTGGCCGGCACCATTCTGTCCTC
CGGCATCAGTGTCCCGTCCGCTGGCCCCCGCAAGATCAGGTCTGTCTCCT
CTTCTTCCTCCTCTGCCGATGTGACCCCGAAGTTCAAGGTCGGTGGCGGT
GCCAAGAGCGGGAGGGTGAAGGCAGCCAAGCCCATTAATGCCCCGGTACG
TCCTGATAAACTCATGTCATTTCCAGAGTCAATATCTGAACGGAGTCATC
ATCCTTTGCAATTTCCCTCTCGTCGCTCATCCTTAAGTGAATTTTGCTTC
AAGTCAACACCAAGACAAGGAAGCGCCTCTCTGATAGCACCCAAAACCCT
CCCCAACACTTGATACAAATTTATGCAGGTCGTGACCGTCGCTCCCCCCA
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protein sequence of jgi.p|Nanoce1779_2|585193

>mRNA_3283-protein ID=mRNA_3283-protein|Name=jgi.p|Nanoce1779_2|585193|organism=Nannochloropsis oceanica|type=polypeptide|length=326bp
MKTFAVLTLGSLAMSQAFMAPSPAAFGPISRSAVRSSAGRSMRMENFNLP
VGEDQAENVPTSMLGEANYRKFVASYKPDGMIVGGARYPLFRRVSELKLL
SLTAETGLLTRLEELGLKLSDLEKLLPLAEELQLLQLAEKNQDLILQTLA
PIAIEQAPALLPILTAVLRTPPTTFYAVAAAALAAEAGIVLVSGNPLIDV
LAGIPLVGVAAVSAVAGTILSSGISVPSAGPRKIRSVSSSSSSADVTPKF
KVGGGAKSGRVKAAKPINAPVRPDKLMSFPESISERSHHPLQFPSRRSSL
SEFCFKSTPRQGSASLIAPKTLPNT*
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mRNA from alignment at scaffold_7:1103345..1104394+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3283 ID=mRNA_3283|Name=jgi.p|Nanoce1779_2|585193|organism=Nannochloropsis oceanica|type=mRNA|length=1050bp|location=Sequence derived from alignment at scaffold_7:1103345..1104394+ (Nannochloropsis oceanica)
AGATCACAGTCTCCTATCCCGTTTCCACCGTCACAATGAAGACCTTTGCT
GTGCTTACGCTGGGTTCTCTGGCCATGTCCCAGGCCTTTATGGCGCCCTC
CCCAGCCGCATTTGGCCCCATCAGCAGATCAGCGGTGCGATCTTCCGCTG
GTCGCAGCATGAGGATGGAGAACTTTAACCTGCCTGTGGGAGAGGACCAG
GCCGAAAACGTGCCTACCAGCATGCTGGGCGAGGCCAACTATCGCAAGTT
CGTGGCGTCCTACAAGCCTGATGGCATGATCGTCGGCGGCGCCCGCTACC
CCCTGTTCAGGCGCGTCTCGGAGCTCAAGCTTCTGTCCCTGACTGCCGAG
ACTGGCCTCTTGACTCGCCTGGAAGAGTTGGGCCTGAAGTTGAGTGACCT
GGAGAAGTTGCTTCCCTTGGCAGAGGAGCTCCAGTTGTTGCAACTGGCCG
AGAAAAACCAAGACCTGATTCTCCAGACCCTGGCCCCTATTGCTATCGAA
CAAGCCCCTGCCCTCCTCCCCATCCTCACCGCTGTGCTGCGCACGCCTCC
CACAACCTTTTACGCCGTCGCTGCAGCTGCTCTGGCCGCTGAGGCGGGCA
TTGTCCTCGTGAGCGGTAACCCTCTGATTGACGTCCTTGCTGGCATCCCC
CTTGTGGGCGTGGCCGCCGTCTCTGCTGTGGCCGGCACCATTCTGTCCTC
CGGCATCAGTGTCCCGTCCGCTGGCCCCCGCAAGATCAGGTCTGTCTCCT
CTTCTTCCTCCTCTGCCGATGTGACCCCGAAGTTCAAGGTCGGTGGCGGT
GCCAAGAGCGGGAGGGTGAAGGCAGCCAAGCCCATTAATGCCCCGGTACG
TCCTGATAAACTCATGTCATTTCCAGAGTCAATATCTGAACGGAGTCATC
ATCCTTTGCAATTTCCCTCTCGTCGCTCATCCTTAAGTGAATTTTGCTTC
AAGTCAACACCAAGACAAGGAAGCGCCTCTCTGATAGCACCCAAAACCCT
CCCCAACACTTGATACAAATTTATGCAGGTCGTGACCGTCGCTCCCCCCA
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Coding sequence (CDS) from alignment at scaffold_7:1103345..1104394+

>mRNA_3283 ID=mRNA_3283|Name=jgi.p|Nanoce1779_2|585193|organism=Nannochloropsis oceanica|type=CDS|length=978bp|location=Sequence derived from alignment at scaffold_7:1103345..1104394+ (Nannochloropsis oceanica)
ATGAAGACCTTTGCTGTGCTTACGCTGGGTTCTCTGGCCATGTCCCAGGC
CTTTATGGCGCCCTCCCCAGCCGCATTTGGCCCCATCAGCAGATCAGCGG
TGCGATCTTCCGCTGGTCGCAGCATGAGGATGGAGAACTTTAACCTGCCT
GTGGGAGAGGACCAGGCCGAAAACGTGCCTACCAGCATGCTGGGCGAGGC
CAACTATCGCAAGTTCGTGGCGTCCTACAAGCCTGATGGCATGATCGTCG
GCGGCGCCCGCTACCCCCTGTTCAGGCGCGTCTCGGAGCTCAAGCTTCTG
TCCCTGACTGCCGAGACTGGCCTCTTGACTCGCCTGGAAGAGTTGGGCCT
GAAGTTGAGTGACCTGGAGAAGTTGCTTCCCTTGGCAGAGGAGCTCCAGT
TGTTGCAACTGGCCGAGAAAAACCAAGACCTGATTCTCCAGACCCTGGCC
CCTATTGCTATCGAACAAGCCCCTGCCCTCCTCCCCATCCTCACCGCTGT
GCTGCGCACGCCTCCCACAACCTTTTACGCCGTCGCTGCAGCTGCTCTGG
CCGCTGAGGCGGGCATTGTCCTCGTGAGCGGTAACCCTCTGATTGACGTC
CTTGCTGGCATCCCCCTTGTGGGCGTGGCCGCCGTCTCTGCTGTGGCCGG
CACCATTCTGTCCTCCGGCATCAGTGTCCCGTCCGCTGGCCCCCGCAAGA
TCAGGTCTGTCTCCTCTTCTTCCTCCTCTGCCGATGTGACCCCGAAGTTC
AAGGTCGGTGGCGGTGCCAAGAGCGGGAGGGTGAAGGCAGCCAAGCCCAT
TAATGCCCCGGTACGTCCTGATAAACTCATGTCATTTCCAGAGTCAATAT
CTGAACGGAGTCATCATCCTTTGCAATTTCCCTCTCGTCGCTCATCCTTA
AGTGAATTTTGCTTCAAGTCAACACCAAGACAAGGAAGCGCCTCTCTGAT
AGCACCCAAAACCCTCCCCAACACTTGA
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Synonyms
Publications