jgi.p|Nanoce1779_2|585191, mRNA_3281 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|585191
Unique Name	mRNA_3281
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1378
Alignment location	scaffold_7:1100388..1101765 +

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Properties


Property Name	Value
TranscriptId	585277
Track	FilteredModels2
ProteinId	585191

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:1100388..1101765 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585191	gene_3281	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585191	mRNA_3281-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3281	CDS_3281	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:1100388..1101765+
coding sequence from alignment at scaffold_7:1100388..1101765+

mRNA sequence

>mRNA_3281 ID=mRNA_3281|Name=jgi.p|Nanoce1779_2|585191|organism=Nannochloropsis oceanica|type=mRNA|length=1378bp
TGCAATGGCGGCAGCACGGCCGCCACTACCAGAAAAACCTTCCTTGCCTC
CTCCCCTTTCCCCTCCTCCTCTTCCTCTTCCTACTCCTCCTCATCCCCCT
ACTCGCCCCTCCTCCGTCGGCTACCACCACCCCCCTCCTCCCAAGCGTCG
TCGGCCGCCTCCCTCTCCACCGCCACCCGCCTCATGGACAGCATGAGCTT
TGAACCCCGGGTGGGCAAGGCGCCAGGCACGTCCAGCAGCAGCACTAATG
CCACCCCTCCCCCCACCCGCCGCACGGGCGCCATCGCCTTGAAGGTCGGC
ATGATGGGTGTATACGACCAGTGGGGGCAACGGTACCCATGTACAATCCT
TGCGCTCGATTCAGTGCAAGCGTTGCAGATCAAGAAGGACGCGACAGACG
GGTATACTGCAGTCCAACTGGGTGCAGGCGAAAAGAAATCAAAAAACATC
TCTCAGCCCGAAAGAGGACACCTCGACCGGTGGATTGATGGGGATGGGAC
TGCACCACCCAAGCGAAAATTGTGGGAGTTTAGGGTGACGCCCGATGCAC
TGCTCTTACCAGGCACGCCCGTGCTGGCGCAGCACTTTGTTCCGGGGCAA
CTGGTGGACGTGGCGGGCACGAGCAAGGGGAAGGGATTTCAAGGTGTGAT
GAAACGATGGGGTTTTAAAGGCCAAGGTGCCTCCCACGGCGTCTCTGTCT
CGCACCGTTCTCTGGGGTCCACGGGACAAAACACTTCCCCTGGGCGCGTG
TTTAAGGGCAAGAAGATGCCGGGCCGGATGGGGGGGAAACGAGTGACGGT
CCAGAACCTCTGGCTGTACAAGATTGACACGGAACGCAACCTCCTCTACA
TTAAAGGCCACATTCCCGGCAACAAGGGGGCTTTCGTCCGTGTCACCGAT
GCCGTGAAGGGTGCGCGTTTCCCTGCCCCTCCACCTATTCCTACATTTGT
CCCCGAGGAGGGAATCACCTATCCGAAGGAGATAACGGCCCAAGCGCCGG
ATGTGGACCCGCTGACGCCGCCGGAGGGGAGGGACGACGAGTAGAGGGCG
GGGTTGGTGGGGGGAGGAAGGGAGGAAGGGTGTTTTAGAATGGCGGCGAA
GAAGAACGAACAAAAGAAGAAAGCACTTTCGATACGAGAAGAAAGGTCTT
TGCGCGGAAGGAGGGGGGGATGATGTTTTGTCCCCCTGTTCGTTATGGTT
GGTTAATTCTTGAAGAAAACCCCTCGGTGCCTCATGGTACGGACTTTACG
CCTAGTAGCATTTTTCTCCTGTACACTCTCTTCCTCCGCGACCTAGTCAT
GTGCATGTTCTAGGAAGCACCACTAGTGCCCTCCACCGTCCACAGCCGTT
TCTCTCACGCCGTAGGGCACCCTCGCCC

protein sequence of jgi.p|Nanoce1779_2|585191

>mRNA_3281-protein ID=mRNA_3281-protein|Name=jgi.p|Nanoce1779_2|585191|organism=Nannochloropsis oceanica|type=polypeptide|length=287bp
MDSMSFEPRVGKAPGTSSSSTNATPPPTRRTGAIALKVGMMGVYDQWGQR
YPCTILALDSVQALQIKKDATDGYTAVQLGAGEKKSKNISQPERGHLDRW
IDGDGTAPPKRKLWEFRVTPDALLLPGTPVLAQHFVPGQLVDVAGTSKGK
GFQGVMKRWGFKGQGASHGVSVSHRSLGSTGQNTSPGRVFKGKKMPGRMG
GKRVTVQNLWLYKIDTERNLLYIKGHIPGNKGAFVRVTDAVKGARFPAPP
PIPTFVPEEGITYPKEITAQAPDVDPLTPPEGRDDE*

mRNA from alignment at scaffold_7:1100388..1101765+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3281 ID=mRNA_3281|Name=jgi.p|Nanoce1779_2|585191|organism=Nannochloropsis oceanica|type=mRNA|length=1378bp|location=Sequence derived from alignment at scaffold_7:1100388..1101765+ (Nannochloropsis oceanica)
TGCAATGGCGGCAGCACGGCCGCCACTACCAGAAAAACCTTCCTTGCCTC
CTCCCCTTTCCCCTCCTCCTCTTCCTCTTCCTACTCCTCCTCATCCCCCT
ACTCGCCCCTCCTCCGTCGGCTACCACCACCCCCCTCCTCCCAAGCGTCG
TCGGCCGCCTCCCTCTCCACCGCCACCCGCCTCATGGACAGCATGAGCTT
TGAACCCCGGGTGGGCAAGGCGCCAGGCACGTCCAGCAGCAGCACTAATG
CCACCCCTCCCCCCACCCGCCGCACGGGCGCCATCGCCTTGAAGGTCGGC
ATGATGGGTGTATACGACCAGTGGGGGCAACGGTACCCATGTACAATCCT
TGCGCTCGATTCAGTGCAAGCGTTGCAGATCAAGAAGGACGCGACAGACG
GGTATACTGCAGTCCAACTGGGTGCAGGCGAAAAGAAATCAAAAAACATC
TCTCAGCCCGAAAGAGGACACCTCGACCGGTGGATTGATGGGGATGGGAC
TGCACCACCCAAGCGAAAATTGTGGGAGTTTAGGGTGACGCCCGATGCAC
TGCTCTTACCAGGCACGCCCGTGCTGGCGCAGCACTTTGTTCCGGGGCAA
CTGGTGGACGTGGCGGGCACGAGCAAGGGGAAGGGATTTCAAGGTGTGAT
GAAACGATGGGGTTTTAAAGGCCAAGGTGCCTCCCACGGCGTCTCTGTCT
CGCACCGTTCTCTGGGGTCCACGGGACAAAACACTTCCCCTGGGCGCGTG
TTTAAGGGCAAGAAGATGCCGGGCCGGATGGGGGGGAAACGAGTGACGGT
CCAGAACCTCTGGCTGTACAAGATTGACACGGAACGCAACCTCCTCTACA
TTAAAGGCCACATTCCCGGCAACAAGGGGGCTTTCGTCCGTGTCACCGAT
GCCGTGAAGGGTGCGCGTTTCCCTGCCCCTCCACCTATTCCTACATTTGT
CCCCGAGGAGGGAATCACCTATCCGAAGGAGATAACGGCCCAAGCGCCGG
ATGTGGACCCGCTGACGCCGCCGGAGGGGAGGGACGACGAGTAGAGGGCG
GGGTTGGTGGGGGGAGGAAGGGAGGAAGGGTGTTTTAGAATGGCGGCGAA
GAAGAACGAACAAAAGAAGAAAGCACTTTCGATACGAGAAGAAAGGTCTT
TGCGCGGAAGGAGGGGGGGATGATGTTTTGTCCCCCTGTTCGTTATGGTT
GGTTAATTCTTGAAGAAAACCCCTCGGTGCCTCATGGTACGGACTTTACG
CCTAGTAGCATTTTTCTCCTGTACACTCTCTTCCTCCGCGACCTAGTCAT
GTGCATGTTCTAGGAAGCACCACTAGTGCCCTCCACCGTCCACAGCCGTT
TCTCTCACGCCGTAGGGCACCCTCGCCC

Coding sequence (CDS) from alignment at scaffold_7:1100388..1101765+

>mRNA_3281 ID=mRNA_3281|Name=jgi.p|Nanoce1779_2|585191|organism=Nannochloropsis oceanica|type=CDS|length=861bp|location=Sequence derived from alignment at scaffold_7:1100388..1101765+ (Nannochloropsis oceanica)
ATGGACAGCATGAGCTTTGAACCCCGGGTGGGCAAGGCGCCAGGCACGTC
CAGCAGCAGCACTAATGCCACCCCTCCCCCCACCCGCCGCACGGGCGCCA
TCGCCTTGAAGGTCGGCATGATGGGTGTATACGACCAGTGGGGGCAACGG
TACCCATGTACAATCCTTGCGCTCGATTCAGTGCAAGCGTTGCAGATCAA
GAAGGACGCGACAGACGGGTATACTGCAGTCCAACTGGGTGCAGGCGAAA
AGAAATCAAAAAACATCTCTCAGCCCGAAAGAGGACACCTCGACCGGTGG
ATTGATGGGGATGGGACTGCACCACCCAAGCGAAAATTGTGGGAGTTTAG
GGTGACGCCCGATGCACTGCTCTTACCAGGCACGCCCGTGCTGGCGCAGC
ACTTTGTTCCGGGGCAACTGGTGGACGTGGCGGGCACGAGCAAGGGGAAG
GGATTTCAAGGTGTGATGAAACGATGGGGTTTTAAAGGCCAAGGTGCCTC
CCACGGCGTCTCTGTCTCGCACCGTTCTCTGGGGTCCACGGGACAAAACA
CTTCCCCTGGGCGCGTGTTTAAGGGCAAGAAGATGCCGGGCCGGATGGGG
GGGAAACGAGTGACGGTCCAGAACCTCTGGCTGTACAAGATTGACACGGA
ACGCAACCTCCTCTACATTAAAGGCCACATTCCCGGCAACAAGGGGGCTT
TCGTCCGTGTCACCGATGCCGTGAAGGGTGCGCGTTTCCCTGCCCCTCCA
CCTATTCCTACATTTGTCCCCGAGGAGGGAATCACCTATCCGAAGGAGAT
AACGGCCCAAGCGCCGGATGTGGACCCGCTGACGCCGCCGGAGGGGAGGG
ACGACGAGTAG

Synonyms

Publications