jgi.p|Nanoce1779_2|585189, mRNA_3280 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585189
Unique NamemRNA_3280
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2045
Alignment locationscaffold_7:1097873..1100059 -

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Properties
Property NameValue
TranscriptId585275
TrackFilteredModels2
ProteinId585189
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:1097873..1100059 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585189gene_3280Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585189mRNA_3280-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3280CDS_3280Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3280 ID=mRNA_3280|Name=jgi.p|Nanoce1779_2|585189|organism=Nannochloropsis oceanica|type=mRNA|length=2045bp
ATAGCCTCTGGAAGCTGCTGGCTGCTTGCCTGCTGCCTCCTAACTTTTTT
GAAGCATGAAGATCAAGAACAACAGGGCAGAGACCTTTTCCCAGTAGCGA
CCCTCGCCACCAATTATGAAAGTACATACCCACGGCGCATGTACACACAT
AAAATTTTATCGCTTTACCTCTTGAACGATCACGAGGCAGCGTTGCTGGT
GCGCGCACCAAAGGCCTGCTGCTGTCTCACAACATTGGTTCACGCGCTTT
CCAGCTGCTTCAACTTCGGCATGCACACTCAGCCACTTCTCCCGACATCA
CTTACACGACACAGGTGCGCAGGAGGTGGTGGGCCAAGAAGCAGCAGTAG
AGAGTATCATTAGCAGCACCGGCAGCGACAGCACATCAGCACTGCGCGAA
GTCAAGCACAAGCAAGAAAGGATCCGCACCATTCCTTCCTCAATTTTATG
GCGTCTGCAGCACCCACCATCAAAGTGGTGGTCACAGGAGGCGGAGGCTT
CTTGGGACGATATCTATGCCAGACACTGCTACGACGGAAGCGATTGAACG
GCCGAGCCCTGGAGAGTATTGCCATTCTTGACGATATTTTTGGAGATACC
CACATTCCCTGCGACACCAAAGTCCAGGTGTTCCCCAACGGGCCTACCAA
CGGTGCCTCCTCCAACATTCGCTTGGAGAGCTACCGAGGAGACATTACCG
ATCGGAAGCTCGTACAGGAGGTGTTGAACCCGGGACCAGGCTCTGGTGGG
GTGGTGGTATTTCACCTGGCCTCGATCATGAGCGGACAGGGAGAGACGCA
GTTTGACAAGTGCTTAAGCGTGAACCTCGACGGCACCCGCAACATCCTCG
AAGAAGCCCGAGCCCTCCACGCCCAGGGTCAAGCTGGGGGACAACCCGTG
CGTTTTGTCTTCCCCTCTTCCATTGCTGCCTTCGGCCCCGCCAGTGAAGT
AAACGACGAGACCAAGAGAGTGCCTCAGAGCACGTACGGGACAACGAAAG
TAATGGGGGAGCTTTTGATTAATGATTTTACTCGCAAGGGGTGGATCGAT
GGAAGGACGGGGAGGCTGCCTACAGTGATTGTGAGGCCGGGTAATGTGAA
TGGTGCAGCGACCGGGTGTTTCTCGGCCGTGGTCCGAGAGGTGCTGATGG
GACATGACTATGTCATTCCTATCGACCCGCGCCAGTCACATCCAGTGATT
TCTGCGAGACGGACGATAAAGTGTTTGTTGGCTTTGGCTGAGGTCGAAAG
TGAGAAGTTGGGATTTGACCGAAGTGTTAACTTGCCGGCGTTGCAGACAA
CGATGGATGAGCTCTTGTTTCACACTCGGCAGATTGCGCAGGGGAGGGGT
ATTCCAATAGGGGAGGTGGTTGTCAAGGTGGATCCATTGGTGAGCAGCAT
TGTCGGAGGCATGCCACAGGTCATGCATAGCCACCGGGCGAAGGCGCTAG
GTTTTCCGAGAGATGGGAGTGTGGAGGCGGTGATTGAAGAATATGTGGAC
GAATTTTTGGATGATGAGATGAAGGATGATTATCCACTTTTTTCTGTGTA
GACCGGGATGGGTAGGGAGCGAAGAAGAGTGAGAGGGAGGATGACTGTAA
TAATTTGGAATCTTTGGAAGATAAGAGTGTTTCTGCTTTTGTTCCAAGGA
GGAGGGATGAAGGACATGGGCGTATTGTGAAGAAATGGAGAAGAGAAAGG
AAGGGGGGAACGCACGTGTCTTTGTACAGGCCAGCGGAGATTGCATGTTA
TCGAAACTTGCGGAAGACGAAAGAATAGGAAGTGCACCACCCGTAGTATT
ATTTTCAACGAATAAGAGTTTTAAACCGATAATGATCAAGATAGAGAGAT
GTTTAGAGGAAGTCCAAGAGCGTCAGAGTGGGGGAGGAGAAAAATGGAGA
GAAGTGGGTGCACCAAAAAGAGCCAGTAACGACGAGTAACCATAAAGACC
AGGAGAAATTACGGGAAAAAGAATAACGCAACATACATAACAGTAAATCG
GGACAGATGCGATCATTGCTTTTGGCCCTGTGGCGACGAAAAAGG
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protein sequence of jgi.p|Nanoce1779_2|585189

>mRNA_3280-protein ID=mRNA_3280-protein|Name=jgi.p|Nanoce1779_2|585189|organism=Nannochloropsis oceanica|type=polypeptide|length=368bp
MASAAPTIKVVVTGGGGFLGRYLCQTLLRRKRLNGRALESIAILDDIFGD
THIPCDTKVQVFPNGPTNGASSNIRLESYRGDITDRKLVQEVLNPGPGSG
GVVVFHLASIMSGQGETQFDKCLSVNLDGTRNILEEARALHAQGQAGGQP
VRFVFPSSIAAFGPASEVNDETKRVPQSTYGTTKVMGELLINDFTRKGWI
DGRTGRLPTVIVRPGNVNGAATGCFSAVVREVLMGHDYVIPIDPRQSHPV
ISARRTIKCLLALAEVESEKLGFDRSVNLPALQTTMDELLFHTRQIAQGR
GIPIGEVVVKVDPLVSSIVGGMPQVMHSHRAKALGFPRDGSVEAVIEEYV
DEFLDDEMKDDYPLFSV*
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mRNA from alignment at scaffold_7:1097873..1100059-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3280 ID=mRNA_3280|Name=jgi.p|Nanoce1779_2|585189|organism=Nannochloropsis oceanica|type=mRNA|length=2187bp|location=Sequence derived from alignment at scaffold_7:1097873..1100059- (Nannochloropsis oceanica)
ATAGCCTCTGGAAGCTGCTGGCTGCTTGCCTGCTGCCTCCTAACTTTTTT
GAAGCATGAAGATCAAGAACAACAGGGCAGAGACCTTTTCCCAGTAGCGA
CCCTCGCCACCAATTATGAAAGTACATACCCACGGCGCATGTACACACAT
AAAATTTTATCGCTTTACCTCTTGAACGATCACGAGGCAGCGTTGCTGGT
GCGCGCACCAAAGGCCTGCTGCTGTCTCACAACATTGGTTCACGCGCTTT
CCAGCTGCTTCAACTTCGGCATGCACACTCAGCCACTTCTCCCGACATCA
CTTACACGACACAGGTGCGCAGGAGGTGGTGGGCCAAGAAGCAGCAGTAG
AGAGTATCATTAGCAGCACCGGCAGCGACAGCACATCAGCACTGCGCGAA
GTCAAGCACAAGCAAGAAAGGATCCGCACCATTCCTTCCTCAATTTTATG
GCGTCTGCAGCACCCACCATCAAAGTGGTGGTCACAGGAGGCGGAGGCTT
CTTGGGACGATATCTATGCCAGACACTGCTACGACGGAAGCGATTGAACG
GCCGAGCCCTGGAGAGTATTGCCATTCTTGACGATATTTTTGGAGATACC
CACATTCCCTGCGACACCAAAGTCCAGGTGTTCCCCAACGGGCCTACCAA
CGGTGCCTCCTCCAACATTCGCTTGGAGAGCTACCGAGGAGACATTACCG
ATCGGAAGCTCGTACAGGAGGTGTTGAACCCGGGACCAGGCTCTGGTGGG
GTGGTGGTATTTCACCTGGCCTCGATCATGAGCGGACAGGGAGAGACGCA
GTTTGACAAGTGCTTAAGCGTGAACCTCGGTACGTCCGCTTCCATACTTA
TTTTGGGGGATGATATGGTTTTAATGCATATTACCGTGCGGTCATGACGT
AAACTCATCTTTCCTTCCTTCCTCCCTCCTTCCTTTCCCCCTCCTCCCTT
TCCTCCCGCCCTCGACACCAGACGGCACCCGCAACATCCTCGAAGAAGCC
CGAGCCCTCCACGCCCAGGGTCAAGCTGGGGGACAACCCGTGCGTTTTGT
CTTCCCCTCTTCCATTGCTGCCTTCGGCCCCGCCAGTGAAGTAAACGACG
AGACCAAGAGAGTGCCTCAGAGCACGTACGGGACAACGAAAGTAATGGGG
GAGCTTTTGATTAATGATTTTACTCGCAAGGGGTGGATCGATGGAAGGAC
GGGGAGGCTGCCTACAGTGATTGTGAGGCCGGGTAATGTGAATGGTGCAG
CGACCGGGTGTTTCTCGGCCGTGGTCCGAGAGGTGCTGATGGGACATGAC
TATGTCATTCCTATCGACCCGCGCCAGTCACATCCAGTGATTTCTGCGAG
ACGGACGATAAAGTGTTTGTTGGCTTTGGCTGAGGTCGAAAGTGAGAAGT
TGGGATTTGACCGAAGTGTTAACTTGCCGGCGTTGCAGACAACGATGGAT
GAGCTCTTGTTTCACACTCGGCAGATTGCGCAGGGGAGGGGTATTCCAAT
AGGGGAGGTGGTTGTCAAGGTGGATCCATTGGTGAGCAGCATTGTCGGAG
GCATGCCACAGGTCATGCATAGCCACCGGGCGAAGGCGCTAGGTTTTCCG
AGAGATGGGAGTGTGGAGGCGGTGATTGAAGAATATGTGGACGAATTTTT
GGATGATGAGATGAAGGATGATTATCCACTTTTTTCTGTGTAGACCGGGA
TGGGTAGGGAGCGAAGAAGAGTGAGAGGGAGGATGACTGTAATAATTTGG
AATCTTTGGAAGATAAGAGTGTTTCTGCTTTTGTTCCAAGGAGGAGGGAT
GAAGGACATGGGCGTATTGTGAAGAAATGGAGAAGAGAAAGGAAGGGGGG
AACGCACGTGTCTTTGTACAGGCCAGCGGAGATTGCATGTTATCGAAACT
TGCGGAAGACGAAAGAATAGGAAGTGCACCACCCGTAGTATTATTTTCAA
CGAATAAGAGTTTTAAACCGATAATGATCAAGATAGAGAGATGTTTAGAG
GAAGTCCAAGAGCGTCAGAGTGGGGGAGGAGAAAAATGGAGAGAAGTGGG
TGCACCAAAAAGAGCCAGTAACGACGAGTAACCATAAAGACCAGGAGAAA
TTACGGGAAAAAGAATAACGCAACATACATAACAGTAAATCGGGACAGAT
GCGATCATTGCTTTTGGCCCTGTGGCGACGAAAAAGG
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Coding sequence (CDS) from alignment at scaffold_7:1097873..1100059-

>mRNA_3280 ID=mRNA_3280|Name=jgi.p|Nanoce1779_2|585189|organism=Nannochloropsis oceanica|type=CDS|length=2208bp|location=Sequence derived from alignment at scaffold_7:1097873..1100059- (Nannochloropsis oceanica)
ACGGCACCCGCAACATCCTCGAAGAAGCCCGAGCCCTCCACGCCCAGGGT
CAAGCTGGGGGACAACCCGTGCGTTTTGTCTTCCCCTCTTCCATTGCTGC
CTTCGGCCCCGCCAGTGAAGTAAACGACGAGACCAAGAGAGTGCCTCAGA
GCACGTACGGGACAACGAAAGTAATGGGGGAGCTTTTGATTAATGATTTT
ACTCGCAAGGGGTGGATCGATGGAAGGACGGGGAGGCTGCCTACAGTGAT
TGTGAGGCCGGGTAATGTGAATGGTGCAGCGACCGGGTGTTTCTCGGCCG
TGGTCCGAGAGGTGCTGATGGGACATGACTATGTCATTCCTATCGACCCG
CGCCAGTCACATCCAGTGATTTCTGCGAGACGGACGATAAAGTGTTTGTT
GGCTTTGGCTGAGGTCGAAAGTGAGAAGTTGGGATTTGACCGAAGTGTTA
ACTTGCCGGCGTTGCAGACAACGATGGATGAGCTCTTGTTTCACACTCGG
CAGATTGCGCAGGGGAGGGGTATTCCAATAGGGGAGGTGGTTGTCAAGGT
GGATCCATTGGTGAGCAGCATTGTCGGAGGCATGCCACAGGTCATGCATA
GCCACCGGGCGAAGGCGCTAGGTTTTCCGAGAGATGGGAGTGTGGAGGCG
GTGATTGAAGAATATGTGGACGAATTTTTGGATGATGAGATGAAGGATGA
TTATCCACTTTTTTCTGTGTAGATGGCGTCTGCAGCACCCACCATCAAAG
TGGTGGTCACAGGAGGCGGAGGCTTCTTGGGACGATATCTATGCCAGACA
CTGCTACGACGGAAGCGATTGAACGGCCGAGCCCTGGAGAGTATTGCCAT
TCTTGACGATATTTTTGGAGATACCCACATTCCCTGCGACACCAAAGTCC
AGGTGTTCCCCAACGGGCCTACCAACGGTGCCTCCTCCAACATTCGCTTG
GAGAGCTACCGAGGAGACATTACCGATCGGAAGCTCGTACAGGAGGTGTT
GAACCCGGGACCAGGCTCTGGTGGGGTGGTGGTATTTCACCTGGCCTCGA
TCATGAGCGGACAGGGAGAGACGCAGTTTGACAAGTGCTTAAGCGTGAAC
CTCGACGGCACCCGCAACATCCTCGAAGAAGCCCGAGCCCTCCACGCCCA
GGGTCAAGCTGGGGGACAACCCGTGCGTTTTGTCTTCCCCTCTTCCATTG
CTGCCTTCGGCCCCGCCAGTGAAGTAAACGACGAGACCAAGAGAGTGCCT
CAGAGCACGTACGGGACAACGAAAGTAATGGGGGAGCTTTTGATTAATGA
TTTTACTCGCAAGGGGTGGATCGATGGAAGGACGGGGAGGCTGCCTACAG
TGATTGTGAGGCCGGGTAATGTGAATGGTGCAGCGACCGGGTGTTTCTCG
GCCGTGGTCCGAGAGGTGCTGATGGGACATGACTATGTCATTCCTATCGA
CCCGCGCCAGTCACATCCAGTGATTTCTGCGAGACGGACGATAAAGTGTT
TGTTGGCTTTGGCTGAGGTCGAAAGTGAGAAGTTGGGATTTGACCGAAGT
GTTAACTTGCCGGCGTTGCAGACAACGATGGATGAGCTCTTGTTTCACAC
TCGGCAGATTGCGCAGGGGAGGGGTATTCCAATAGGGGAGGTGGTTGTCA
AGGTGGATCCATTGGTGAGCAGCATTGTCGGAGGCATGCCACAGGTCATG
CATAGCCACCGGGCGAAGGCGCTAGGTTTTCCGAGAGATGGGAGTGTGGA
GGCGGTGATTGAAGAATATGTGGACGAATTTTTGGATGATGAGATGAAGG
ATGATTATCCACTTTTTTCTGTGTAGATGGCGTCTGCAGCACCCACCATC
AAAGTGGTGGTCACAGGAGGCGGAGGCTTCTTGGGACGATATCTATGCCA
GACACTGCTACGACGGAAGCGATTGAACGGCCGAGCCCTGGAGAGTATTG
CCATTCTTGACGATATTTTTGGAGATACCCACATTCCCTGCGACACCAAA
GTCCAGGTGTTCCCCAACGGGCCTACCAACGGTGCCTCCTCCAACATTCG
CTTGGAGAGCTACCGAGGAGACATTACCGATCGGAAGCTCGTACAGGAGG
TGTTGAACCCGGGACCAGGCTCTGGTGGGGTGGTGGTATTTCACCTGGCC
TCGATCATGAGCGGACAGGGAGAGACGCAGTTTGACAAGTGCTTAAGCGT
GAACCTCG
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Synonyms
Publications