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Properties
| Property Name | Value |
|---|
| TranscriptId | 585272 |
| Track | FilteredModels2 |
| ProteinId | 585186 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_7 | supercontig | scaffold_7:1095653..1097171 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3279 ID=mRNA_3279|Name=jgi.p|Nanoce1779_2|585186|organism=Nannochloropsis oceanica|type=mRNA|length=1519bp
AGACAGATATTGCTGCTGTGATCGTATACCAATCACCTACCATAACTATG
CCTATCACTACTGCCTGCCTGTCTCGTCGCCTGTTCAGGGCTGCCACGGC
AACTGCCATATGCTGCTTGCTTCTGGCACCTACGGCCGTCGGGTATGTCA
CACTGCGCCCTCCCTGTGCATCCAGCATGACCCGCGCGTCCCTTTCGTCT
TCCCCTCCCTCGTCCACGGCCACCTCCTCCTCCCGCTCCTCGAGCAACGT
TGTCCATACTGACACGGGCCTTCTCATTAAGAATTACCGCCCCTTGCCTC
CTTCCGACGACGACCCACTCGACGTGCGCTGTGCCCTGCTGCACATCTCC
GCCCGGAAGGCCCTTAAATCTGGCAAGATGGAAATCGCAAGAAGGTTCTA
CGAGCTCTTTCTCTTTCAATGGAAGGGGTATCGGACCGAGAATGCGATTG
CACACACCTACTTCCTGTGGGCCTTGCTCGAGCAACGCGCTAAGGATTAC
ACCAAGGCCCGCCGGCTCTTTCAGGAAGCCACTGAGCGGTACCCTACCCA
TGCTCGTCTTCTTCAGGCTTGGGCATTGATGGAATCCAAGTGTGGCAAGT
TAGAAGAAGCGCAACGACTGATCAAGGAAGCGGTGGAGAATGACAAGAGC
TTGGAGCCCGTATTGAAATGGAAAATGTGGGGATTGCCCCCCGCAACGGC
CGCGGCCGCGGCTGCCATTGTAACTGCTGGAACAGCAGCGCCCGGGGCAG
TAGGTATTGTCTGAAAGGATGGGAGGGGTAGAAGGAGGGTTGAGGGTGTG
GTTTTAGGGACTTAAGATGAGGGGACTGTGGGTAGATGTCGGTACACGCC
GTGTACATGCTTCCTTTTTGGTTAGATACCTGTATATATGAACATAAGGA
TGAAAAATGGTGAGAAAGGAGTATGCAGCACCGAGCAAAAATAGGAATTT
TAAGGGGATGGCAGAAACACACAAGAGAGGACAGTTGAGAGAGTTTGAAT
AACGGTTTCGATTGAACGCAGGCACCAGTGCCTTTCGCACGCGGTGGTTC
ACAACAAGAGAGAGAAAAGAGCAAGGCGGTGGCAGAAGTTGAATGGACCA
ATGGTGCGACATCCCATCCACCACTTGCATGTGTAGATGTGTGCGTGCGC
ATCTTCTGTATCAGGCGATTTCATACATGTCGACCACCACCAACATTTCT
TCCAGCCCCACGTCCCACGCACGTACGTATCGAACGTACCGGTTTTTGAA
TTCGTTTTAGGAAGTGGGAGATTCGGTCCCATCGCGTTCGCATTTGATTA
TACTATCGACGTGACAACAATAACATCTTCAATGCTATGAACGTAGTCAG
GCGGCGGGGAGCTAGGCTACACTACAATTTAGTCTGGGGACGGGTGAGTT
CAGACCACCACCGATTGCCTTGGTGAGAATGGAGAAGAGTGTGCAACAGA
GCAAGAGGACATTTGATAGAAATAGGTATTAGAAGACGTGTAAAAGTGCA
ATTAAAAGTATTTTTTGAT back to topprotein sequence of jgi.p|Nanoce1779_2|585186 >mRNA_3279-protein ID=mRNA_3279-protein|Name=jgi.p|Nanoce1779_2|585186|organism=Nannochloropsis oceanica|type=polypeptide|length=239bp
MPITTACLSRRLFRAATATAICCLLLAPTAVGYVTLRPPCASSMTRASLS
SSPPSSTATSSSRSSSNVVHTDTGLLIKNYRPLPPSDDDPLDVRCALLHI
SARKALKSGKMEIARRFYELFLFQWKGYRTENAIAHTYFLWALLEQRAKD
YTKARRLFQEATERYPTHARLLQAWALMESKCGKLEEAQRLIKEAVENDK
SLEPVLKWKMWGLPPATAAAAAAIVTAGTAAPGAVGIV* back to topmRNA from alignment at scaffold_7:1095653..1097171- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3279 ID=mRNA_3279|Name=jgi.p|Nanoce1779_2|585186|organism=Nannochloropsis oceanica|type=mRNA|length=1519bp|location=Sequence derived from alignment at scaffold_7:1095653..1097171- (Nannochloropsis oceanica)
AGACAGATATTGCTGCTGTGATCGTATACCAATCACCTACCATAACTATG
CCTATCACTACTGCCTGCCTGTCTCGTCGCCTGTTCAGGGCTGCCACGGC
AACTGCCATATGCTGCTTGCTTCTGGCACCTACGGCCGTCGGGTATGTCA
CACTGCGCCCTCCCTGTGCATCCAGCATGACCCGCGCGTCCCTTTCGTCT
TCCCCTCCCTCGTCCACGGCCACCTCCTCCTCCCGCTCCTCGAGCAACGT
TGTCCATACTGACACGGGCCTTCTCATTAAGAATTACCGCCCCTTGCCTC
CTTCCGACGACGACCCACTCGACGTGCGCTGTGCCCTGCTGCACATCTCC
GCCCGGAAGGCCCTTAAATCTGGCAAGATGGAAATCGCAAGAAGGTTCTA
CGAGCTCTTTCTCTTTCAATGGAAGGGGTATCGGACCGAGAATGCGATTG
CACACACCTACTTCCTGTGGGCCTTGCTCGAGCAACGCGCTAAGGATTAC
ACCAAGGCCCGCCGGCTCTTTCAGGAAGCCACTGAGCGGTACCCTACCCA
TGCTCGTCTTCTTCAGGCTTGGGCATTGATGGAATCCAAGTGTGGCAAGT
TAGAAGAAGCGCAACGACTGATCAAGGAAGCGGTGGAGAATGACAAGAGC
TTGGAGCCCGTATTGAAATGGAAAATGTGGGGATTGCCCCCCGCAACGGC
CGCGGCCGCGGCTGCCATTGTAACTGCTGGAACAGCAGCGCCCGGGGCAG
TAGGTATTGTCTGAAAGGATGGGAGGGGTAGAAGGAGGGTTGAGGGTGTG
GTTTTAGGGACTTAAGATGAGGGGACTGTGGGTAGATGTCGGTACACGCC
GTGTACATGCTTCCTTTTTGGTTAGATACCTGTATATATGAACATAAGGA
TGAAAAATGGTGAGAAAGGAGTATGCAGCACCGAGCAAAAATAGGAATTT
TAAGGGGATGGCAGAAACACACAAGAGAGGACAGTTGAGAGAGTTTGAAT
AACGGTTTCGATTGAACGCAGGCACCAGTGCCTTTCGCACGCGGTGGTTC
ACAACAAGAGAGAGAAAAGAGCAAGGCGGTGGCAGAAGTTGAATGGACCA
ATGGTGCGACATCCCATCCACCACTTGCATGTGTAGATGTGTGCGTGCGC
ATCTTCTGTATCAGGCGATTTCATACATGTCGACCACCACCAACATTTCT
TCCAGCCCCACGTCCCACGCACGTACGTATCGAACGTACCGGTTTTTGAA
TTCGTTTTAGGAAGTGGGAGATTCGGTCCCATCGCGTTCGCATTTGATTA
TACTATCGACGTGACAACAATAACATCTTCAATGCTATGAACGTAGTCAG
GCGGCGGGGAGCTAGGCTACACTACAATTTAGTCTGGGGACGGGTGAGTT
CAGACCACCACCGATTGCCTTGGTGAGAATGGAGAAGAGTGTGCAACAGA
GCAAGAGGACATTTGATAGAAATAGGTATTAGAAGACGTGTAAAAGTGCA
ATTAAAAGTATTTTTTGAT back to topCoding sequence (CDS) from alignment at scaffold_7:1095653..1097171- >mRNA_3279 ID=mRNA_3279|Name=jgi.p|Nanoce1779_2|585186|organism=Nannochloropsis oceanica|type=CDS|length=717bp|location=Sequence derived from alignment at scaffold_7:1095653..1097171- (Nannochloropsis oceanica)
ATGCCTATCACTACTGCCTGCCTGTCTCGTCGCCTGTTCAGGGCTGCCAC
GGCAACTGCCATATGCTGCTTGCTTCTGGCACCTACGGCCGTCGGGTATG
TCACACTGCGCCCTCCCTGTGCATCCAGCATGACCCGCGCGTCCCTTTCG
TCTTCCCCTCCCTCGTCCACGGCCACCTCCTCCTCCCGCTCCTCGAGCAA
CGTTGTCCATACTGACACGGGCCTTCTCATTAAGAATTACCGCCCCTTGC
CTCCTTCCGACGACGACCCACTCGACGTGCGCTGTGCCCTGCTGCACATC
TCCGCCCGGAAGGCCCTTAAATCTGGCAAGATGGAAATCGCAAGAAGGTT
CTACGAGCTCTTTCTCTTTCAATGGAAGGGGTATCGGACCGAGAATGCGA
TTGCACACACCTACTTCCTGTGGGCCTTGCTCGAGCAACGCGCTAAGGAT
TACACCAAGGCCCGCCGGCTCTTTCAGGAAGCCACTGAGCGGTACCCTAC
CCATGCTCGTCTTCTTCAGGCTTGGGCATTGATGGAATCCAAGTGTGGCA
AGTTAGAAGAAGCGCAACGACTGATCAAGGAAGCGGTGGAGAATGACAAG
AGCTTGGAGCCCGTATTGAAATGGAAAATGTGGGGATTGCCCCCCGCAAC
GGCCGCGGCCGCGGCTGCCATTGTAACTGCTGGAACAGCAGCGCCCGGGG
CAGTAGGTATTGTCTGA back to top
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