jgi.p|Nanoce1779_2|585185, mRNA_3278 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|585185
Unique Name	mRNA_3278
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2111
Alignment location	scaffold_7:1093170..1095652 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	585271
Track	FilteredModels2
ProteinId	585185

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:1093170..1095652 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585185	gene_3278	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585185	mRNA_3278-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3278	CDS_3278	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:1093170..1095652+
coding sequence from alignment at scaffold_7:1093170..1095652+

mRNA sequence

>mRNA_3278 ID=mRNA_3278|Name=jgi.p|Nanoce1779_2|585185|organism=Nannochloropsis oceanica|type=mRNA|length=2111bp
ACAGTCCTTTGCACCGCTCCATTCTTGAATTTGGTCGCCCCTTTTCTTCT
TCCGCCACAATCAGCAGTAGCAGCACCACCGACCACCCCAACCACCACCA
GCACCATCCCGAAGCCGCGGAATATGTGCAGAGTGCCGCCGAAGAAGGAG
GGACTGACGCTTTTTTTGACAAAACCTCAGTTCTGATGGAAGTGGAAGAC
TGTCCGGGGGCCTTGGCGGAAATGCTGTCCTTCTTTGCTGCCCATAATGT
GAATATCACACGTTTAGAGAGCCGTCCGACAAAGAAGCAATTGGACGGAA
AATTCACCTTTGTCATGTACCTCGATTTTGATGGCTCTCGAGGCGAAGCG
CACGTCGACGCTCTATTGAATGAATTGGGACAACACACTCATAGTCTACT
GGTGTTGGATAAGACGGACGTGCCTTGGTTTCCCCGGCAGGCCTCGCAGC
TGGACGCCATTGCCAATCGGGTGTTAGACGCAGGGGTGGACTTGACGAGT
GAGCACCCGGGATTCTCTGACCCTGTTTATCGTGCCCGACGGGGTGAGCT
GGCGGAGGTGGCGAGGAAGTATGTGCATGGGGAGATTATTCCACGGATTG
AATATACGATGGAGGAGGTGGAGACCTGGGGAGCGGTGTGGAGAAGACAG
GAGGAGTTGCTGCAGCGGCATGCCTGTAGAGAATACCTGGATATATTGGG
GTTGATGAAACAGGAGTGTGGATATGGGCCGCAGAGCATCCCACAACAGG
CGGACATCACCACATTCTTGTCGAGGAGGACGGGGTTTCGCTTGAGGCCC
GTGGCGGGATTGTTGAGCTCGAGGGACTTCTTGAATGGACTGGCCTTTCG
CGTCTTCTTTTGTACGCAGTATATCAGGCACCATTCCCGCCCGCTCTACA
CTCCCGAACCTGATATATGCCACGAGCTCCTGGGTCATGCCCCGCTATTT
GCGGATCCTGATTTCGCGGACTTTTCGAATGAAATCGGTCTCGCCTCCCT
CGGTGCCTCGGACGAAGAAGTAAAGAAACTTGCCTCCTGCTATTGGCACT
CCGTGGAATTTGGTCTTTGTAAACATCAACGACAGCAACAGGAAGAGGGA
GGGAAGGAGGAAAGCGCAAATAGCGGCAGCAGCACCATCAAGGCCTACGG
CGCTGGCTTGCTGTCCTCCTTTGGTGAATTGGAGTATGCGTGCGGAGGCG
GCAAAGGGGGAGAGGGAGGAAGGGAGGGAGGACCGATATTCTTGCCATGG
GACCCGGAGGTGGCTGCAGTACAGGCATATCCAATCACGACTTATCAGCC
TGTGTATTTCGTAGCGGAGAGTCTGTTAGACGCGAAGGAGAAGATGAGGA
AATATTGTGAGAGGAAGATGAGTCGCCCCTTCTTTGCCCGATACATGCCT
GTAACGCAGAGTATTTGGGTGGACCGGGCTGTGAGGGTGGGAAGGAAAGA
GGGGTAGGCTCTTGTTACTCCTCTTTCTCCATAATCACTCGTAGGGAGGG
AAGGAGGGAAGGAGATAGGGGTGGATGAGTCAAGTATACGGAACGTTTGG
ATGGAGCGCGGGATGAGAGTGGATCGGAAGGCGAGACATGGAGGAAGGAA
GCGAAGGTCATAGACACCTTTAAGTCAAGAAGTCAAACTTCCTGACAGAG
AATCAGGATGGACGGATAGAAAGGAGAGGTAGAATGAACGGATAGAAAGG
AGACTCGGGAGAATATAAATTGAAGTCCGAAAAAAGAGAAAATTATAGTG
GTGGGAAAGAAGAGAAAAACAGAGGTTCAGCAACATATAAATTAAAAATT
TTGAGGGGCGAAAAAGAGATTTAGGAGTGTGTGGATATTGTGTCTTCCAT
GTAATCAGAAACAACCAATCAAGGCAATTCTTGGTGTGTAAATTTCGAGC
TACCTCAATAATGAATGTAGAAAGGAAAGAATGATTTGTCCCCCGCATGA
CAGATACATACTCTGGTGCTGTGAGAGCTATATATATTGCTCTTGCAAGC
CACTCTTCATTGTCTTCTTCTTTTTCCTGTCGGGAAAAGGCAGGCACTGT
CTACCACCTTAAAACGCAAGGAAAGCATAAACAAATCGCGACGACACCAA
TCAAAACGTGA

protein sequence of jgi.p|Nanoce1779_2|585185

>mRNA_3278-protein ID=mRNA_3278-protein|Name=jgi.p|Nanoce1779_2|585185|organism=Nannochloropsis oceanica|type=polypeptide|length=424bp
MEVEDCPGALAEMLSFFAAHNVNITRLESRPTKKQLDGKFTFVMYLDFDG
SRGEAHVDALLNELGQHTHSLLVLDKTDVPWFPRQASQLDAIANRVLDAG
VDLTSEHPGFSDPVYRARRGELAEVARKYVHGEIIPRIEYTMEEVETWGA
VWRRQEELLQRHACREYLDILGLMKQECGYGPQSIPQQADITTFLSRRTG
FRLRPVAGLLSSRDFLNGLAFRVFFCTQYIRHHSRPLYTPEPDICHELLG
HAPLFADPDFADFSNEIGLASLGASDEEVKKLASCYWHSVEFGLCKHQRQ
QQEEGGKEESANSGSSTIKAYGAGLLSSFGELEYACGGGKGGEGGREGGP
IFLPWDPEVAAVQAYPITTYQPVYFVAESLLDAKEKMRKYCERKMSRPFF
ARYMPVTQSIWVDRAVRVGRKEG*

mRNA from alignment at scaffold_7:1093170..1095652+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3278 ID=mRNA_3278|Name=jgi.p|Nanoce1779_2|585185|organism=Nannochloropsis oceanica|type=mRNA|length=2483bp|location=Sequence derived from alignment at scaffold_7:1093170..1095652+ (Nannochloropsis oceanica)
ACAGTCCTTTGCACCGCTCCATTCTTGAATTTGGTCGCCCCTTTTCTTCT
TCCGCCACAATCAGCAGTAGCAGCACCACCGACCACCCCAACCACCACCA
GCACCATCCCGAAGCCGCGGAATATGTGCAGAGTGCCGCCGAAGAAGGAG
GGACTGACGCTTTTTTTGACAAAACCTCAGTTCTGATGGAAGTGGAAGAC
TGTCCGGGGGCCTTGGCGGAAATGCTGTCCTTCTTTGCTGCCCATAATGT
GAATATCACACGTTTAGAGAGCCGTCCGACAAAGAAGCAATTGGACGGAA
AATTCACCTTTGTCATGTACCTCGATTTTGATGGCTCTCGAGGCGAAGCG
CACGTCGACGCTCTATTGAATGAATTGGGACAACACACTCATAGTCTACT
GGTGTTGGATAAGACGGACGTGCCTTGGTTTCCCCGGCAGGCCTCGCAGC
TGGACGCCATTGCCAATCGGGTGTTAGACGCAGGGGTGGACTTGACGAGT
GAGCACCCGGGATTCTCTGACCCTGTTTATCGTGCCCGACGGGGTGAGCT
GGCGGAGGTGGCGAGGAAGTATGTGCATGGGGAGATTATTCCACGGATTG
AATATACGATGGAGGAGGTGGAGACCTGGGGAGCGGTGTGGAGAAGACAG
GAGGAGTTGCTGCAGCGGCATGCCTGTAGAGAATACCTGGATATATTGGG
GTTGATGAAACAGGAGTGTGGATATGGGCCGCAGAGCATCCCACAACAGG
CGGACATCACCACATTCTTGTCGAGGAGGACGGGGTTTCGCTTGAGGCCC
GTGGCGGGATTGTTGAGCTCGAGGGACTTCTTGAATGGACTGGCCTTTCG
CGTCTTCTTTTGTACGCAGTATATCAGGTGAATGAGGAGAAAATATTGAT
TCCGCCTCCTATCCACGTGACCTTAACCCCTTCCCTTTGTTGGCACCGGT
TTGTCGCTTACTGCAGTGCCAGCTCTTACGCTCATCGGAGACCGTCACTC
CCTCACCTATTCCCCTCCTCTGACAATCCCACAAACACGCATACCAAAAG
GCACCATTCCCGCCCGCTCTACACTCCCGAACCTGATATATGCCACGAGC
TCCTGGGTCATGCCCCGCTATTTGCGGATCCTGATTTCGCGGACTTTTCG
AATGGTGAGGATGGGTTGAGAGGGAGGAAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAAGGAGGGAGGGTAAGATTGACTCGCTCTGCGCTGCGCATGAAG
CGAATGCAGACGCTTGTCTTATTAATCCAATTGCATCATTTCCCCTCCTA
CGGTCCTTTCATCTACCACCCTCCCTCCCTCTCTCTTTCCCTCCCTCCCT
TAGAAATCGGTCTCGCCTCCCTCGGTGCCTCGGACGAAGAAGTAAAGAAA
CTTGCCTCCTGCTATTGGCACTCCGTGGAATTTGGTCTTTGTAAACATCA
ACGACAGCAACAGGAAGAGGGAGGGAAGGAGGAAAGCGCAAATAGCGGCA
GCAGCACCATCAAGGCCTACGGCGCTGGCTTGCTGTCCTCCTTTGGTGAA
TTGGAGTATGCGTGCGGAGGCGGCAAAGGGGGAGAGGGAGGAAGGGAGGG
AGGACCGATATTCTTGCCATGGGACCCGGAGGTGGCTGCAGTACAGGCAT
ATCCAATCACGACTTATCAGCCTGTGTATTTCGTAGCGGAGAGTCTGTTA
GACGCGAAGGAGAAGATGAGGAAATATTGTGAGAGGAAGATGAGTCGCCC
CTTCTTTGCCCGATACATGCCTGTAACGCAGAGTATTTGGGTGGACCGGG
CTGTGAGGGTGGGAAGGAAAGAGGGGTAGGCTCTTGTTACTCCTCTTTCT
CCATAATCACTCGTAGGGAGGGAAGGAGGGAAGGAGATAGGGGTGGATGA
GTCAAGTATACGGAACGTTTGGATGGAGCGCGGGATGAGAGTGGATCGGA
AGGCGAGACATGGAGGAAGGAAGCGAAGGTCATAGACACCTTTAAGTCAA
GAAGTCAAACTTCCTGACAGAGAATCAGGATGGACGGATAGAAAGGAGAG
GTAGAATGAACGGATAGAAAGGAGACTCGGGAGAATATAAATTGAAGTCC
GAAAAAAGAGAAAATTATAGTGGTGGGAAAGAAGAGAAAAACAGAGGTTC
AGCAACATATAAATTAAAAATTTTGAGGGGCGAAAAAGAGATTTAGGAGT
GTGTGGATATTGTGTCTTCCATGTAATCAGAAACAACCAATCAAGGCAAT
TCTTGGTGTGTAAATTTCGAGCTACCTCAATAATGAATGTAGAAAGGAAA
GAATGATTTGTCCCCCGCATGACAGATACATACTCTGGTGCTGTGAGAGC
TATATATATTGCTCTTGCAAGCCACTCTTCATTGTCTTCTTCTTTTTCCT
GTCGGGAAAAGGCAGGCACTGTCTACCACCTTAAAACGCAAGGAAAGCAT
AAACAAATCGCGACGACACCAATCAAAACGTGA

Coding sequence (CDS) from alignment at scaffold_7:1093170..1095652+

>mRNA_3278 ID=mRNA_3278|Name=jgi.p|Nanoce1779_2|585185|organism=Nannochloropsis oceanica|type=CDS|length=3816bp|location=Sequence derived from alignment at scaffold_7:1093170..1095652+ (Nannochloropsis oceanica)
ATGGAAGTGGAAGACTGTCCGGGGGCCTTGGCGGAAATGCTGTCCTTCTT
TGCTGCCCATAATGTGAATATCACACGTTTAGAGAGCCGTCCGACAAAGA
AGCAATTGGACGGAAAATTCACCTTTGTCATGTACCTCGATTTTGATGGC
TCTCGAGGCGAAGCGCACGTCGACGCTCTATTGAATGAATTGGGACAACA
CACTCATAGTCTACTGGTGTTGGATAAGACGGACGTGCCTTGGTTTCCCC
GGCAGGCCTCGCAGCTGGACGCCATTGCCAATCGGGTGTTAGACGCAGGG
GTGGACTTGACGAGTGAGCACCCGGGATTCTCTGACCCTGTTTATCGTGC
CCGACGGGGTGAGCTGGCGGAGGTGGCGAGGAAGTATGTGCATGGGGAGA
TTATTCCACGGATTGAATATACGATGGAGGAGGTGGAGACCTGGGGAGCG
GTGTGGAGAAGACAGGAGGAGTTGCTGCAGCGGCATGCCTGTAGAGAATA
CCTGGATATATTGGGGTTGATGAAACAGGAGTGTGGATATGGGCCGCAGA
GCATCCCACAACAGGCGGACATCACCACATTCTTGTCGAGGAGGACGGGG
TTTCGCTTGAGGCCCGTGGCGGGATTGTTGAGCTCGAGGGACTTCTTGAA
TGGACTGGCCTTTCGCGTCTTCTTTTGTACGCAGTATATCAGGCACCATT
CCCGCCCGCTCTACACTCCCGAACCTGATATATGCCACGAGCTCCTGGGT
CATGCCCCGCTATTTGCGGATCCTGATTTCGCGGACTTTTCGAATGAAAT
CGGTCTCGCCTCCCTCGGTGCCTCGGACGAAGAAGTAAAGAAACTTGCCT
CCTGCTATTGGCACTCCGTGGAATTTGGTCTTTGTAAACATCAACGACAG
CAACAGGAAGAGGGAGGGAAGGAGGAAAGCGCAAATAGCGGCAGCAGCAC
CATCAAGGCCTACGGCGCTGGCTTGCTGTCCTCCTTTGGTGAATTGGAGT
ATGCGTGCGGAGGCGGCAAAGGGGGAGAGGGAGGAAGGGAGGGAGGACCG
ATATTCTTGCCATGGGACCCGGAGGTGGCTGCAGTACAGGCATATCCAAT
CACGACTTATCAGCCTGTGTATTTCGTAGCGGAGAGTCTGTTAGACGCGA
AGGAGAAGATGAGGAAATATTGTGAGAGGAAGATGAGTCGCCCCTTCTTT
GCCCGATACATGCCTGTAACGCAGAGTATTTGGGTGGACCGGGCTGTGAG
GGTGGGAAGGAAAGAGGGGTAGATGGAAGTGGAAGACTGTCCGGGGGCCT
TGGCGGAAATGCTGTCCTTCTTTGCTGCCCATAATGTGAATATCACACGT
TTAGAGAGCCGTCCGACAAAGAAGCAATTGGACGGAAAATTCACCTTTGT
CATGTACCTCGATTTTGATGGCTCTCGAGGCGAAGCGCACGTCGACGCTC
TATTGAATGAATTGGGACAACACACTCATAGTCTACTGGTGTTGGATAAG
ACGGACGTGCCTTGGTTTCCCCGGCAGGCCTCGCAGCTGGACGCCATTGC
CAATCGGGTGTTAGACGCAGGGGTGGACTTGACGAGTGAGCACCCGGGAT
TCTCTGACCCTGTTTATCGTGCCCGACGGGGTGAGCTGGCGGAGGTGGCG
AGGAAGTATGTGCATGGGGAGATTATTCCACGGATTGAATATACGATGGA
GGAGGTGGAGACCTGGGGAGCGGTGTGGAGAAGACAGGAGGAGTTGCTGC
AGCGGCATGCCTGTAGAGAATACCTGGATATATTGGGGTTGATGAAACAG
GAGTGTGGATATGGGCCGCAGAGCATCCCACAACAGGCGGACATCACCAC
ATTCTTGTCGAGGAGGACGGGGTTTCGCTTGAGGCCCGTGGCGGGATTGT
TGAGCTCGAGGGACTTCTTGAATGGACTGGCCTTTCGCGTCTTCTTTTGT
ACGCAGTATATCAGGCACCATTCCCGCCCGCTCTACACTCCCGAACCTGA
TATATGCCACGAGCTCCTGGGTCATGCCCCGCTATTTGCGGATCCTGATT
TCGCGGACTTTTCGAATGAAATCGGTCTCGCCTCCCTCGGTGCCTCGGAC
GAAGAAGTAAAGAAACTTGCCTCCTGCTATTGGCACTCCGTGGAATTTGG
TCTTTGTAAACATCAACGACAGCAACAGGAAGAGGGAGGGAAGGAGGAAA
GCGCAAATAGCGGCAGCAGCACCATCAAGGCCTACGGCGCTGGCTTGCTG
TCCTCCTTTGGTGAATTGGAGTATGCGTGCGGAGGCGGCAAAGGGGGAGA
GGGAGGAAGGGAGGGAGGACCGATATTCTTGCCATGGGACCCGGAGGTGG
CTGCAGTACAGGCATATCCAATCACGACTTATCAGCCTGTGTATTTCGTA
GCGGAGAGTCTGTTAGACGCGAAGGAGAAGATGAGGAAATATTGTGAGAG
GAAGATGAGTCGCCCCTTCTTTGCCCGATACATGCCTGTAACGCAGAGTA
TTTGGGTGGACCGGGCTGTGAGGGTGGGAAGGAAAGAGGGGTAGATGGAA
GTGGAAGACTGTCCGGGGGCCTTGGCGGAAATGCTGTCCTTCTTTGCTGC
CCATAATGTGAATATCACACGTTTAGAGAGCCGTCCGACAAAGAAGCAAT
TGGACGGAAAATTCACCTTTGTCATGTACCTCGATTTTGATGGCTCTCGA
GGCGAAGCGCACGTCGACGCTCTATTGAATGAATTGGGACAACACACTCA
TAGTCTACTGGTGTTGGATAAGACGGACGTGCCTTGGTTTCCCCGGCAGG
CCTCGCAGCTGGACGCCATTGCCAATCGGGTGTTAGACGCAGGGGTGGAC
TTGACGAGTGAGCACCCGGGATTCTCTGACCCTGTTTATCGTGCCCGACG
GGGTGAGCTGGCGGAGGTGGCGAGGAAGTATGTGCATGGGGAGATTATTC
CACGGATTGAATATACGATGGAGGAGGTGGAGACCTGGGGAGCGGTGTGG
AGAAGACAGGAGGAGTTGCTGCAGCGGCATGCCTGTAGAGAATACCTGGA
TATATTGGGGTTGATGAAACAGGAGTGTGGATATGGGCCGCAGAGCATCC
CACAACAGGCGGACATCACCACATTCTTGTCGAGGAGGACGGGGTTTCGC
TTGAGGCCCGTGGCGGGATTGTTGAGCTCGAGGGACTTCTTGAATGGACT
GGCCTTTCGCGTCTTCTTTTGTACGCAGTATATCAGGCACCATTCCCGCC
CGCTCTACACTCCCGAACCTGATATATGCCACGAGCTCCTGGGTCATGCC
CCGCTATTTGCGGATCCTGATTTCGCGGACTTTTCGAATGAAATCGGTCT
CGCCTCCCTCGGTGCCTCGGACGAAGAAGTAAAGAAACTTGCCTCCTGCT
ATTGGCACTCCGTGGAATTTGGTCTTTGTAAACATCAACGACAGCAACAG
GAAGAGGGAGGGAAGGAGGAAAGCGCAAATAGCGGCAGCAGCACCATCAA
GGCCTACGGCGCTGGCTTGCTGTCCTCCTTTGGTGAATTGGAGTATGCGT
GCGGAGGCGGCAAAGGGGGAGAGGGAGGAAGGGAGGGAGGACCGATATTC
TTGCCATGGGACCCGGAGGTGGCTGCAGTACAGGCATATCCAATCACGAC
TTATCAGCCTGTGTATTTCGTAGCGGAGAGTCTGTTAGACGCGAAGGAGA
AGATGAGGAAATATTGTGAGAGGAAGATGAGTCGCCCCTTCTTTGCCCGA
TACATGCCTGTAACGCAGAGTATTTGGGTGGACCGGGCTGTGAGGGTGGG
AAGGAAAGAGGGGTAG

Synonyms

Publications